Wall clock time and date at job start Tue Mar 31 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 117.00224 * 2 1 4 4 C 1.38807 * 120.02180 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.07884 * 180.02562 * 4 3 2 6 6 C 1.38164 * 120.12491 * 359.97438 * 5 4 3 7 7 C 1.38863 * 120.04325 * 0.02562 * 6 5 4 8 8 N 1.40122 * 120.04098 * 179.97438 * 7 6 5 9 9 C 1.36867 * 127.17861 * 114.97761 * 8 7 6 10 10 S 1.76201 * 126.40404 * 0.02562 * 9 8 7 11 11 C 1.76199 * 99.99986 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38687 * 119.99871 * 179.72328 * 11 10 9 14 14 N 1.31617 * 120.00032 * 180.27703 * 13 11 10 15 15 Si 1.86800 * 120.00050 * 0.28054 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99526 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00046 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99668 * 15 13 11 19 19 N 1.31671 * 107.19657 * 180.27625 * 9 8 7 20 20 N 1.28504 * 110.07361 * 359.58841 * 19 9 8 21 21 C 1.31520 * 109.99462 * 0.42047 * 20 19 9 22 22 C 1.47712 * 126.45809 * 179.74829 * 21 20 19 23 23 C 1.40073 * 120.93561 * 164.72302 * 22 21 20 24 24 C 1.37900 * 118.98286 * 179.70711 * 23 22 21 25 25 N 1.31966 * 120.91009 * 0.58270 * 24 23 22 26 26 C 1.31967 * 122.07439 * 359.70842 * 25 24 23 27 27 C 1.37887 * 120.91014 * 359.97438 * 26 25 24 28 28 C 1.38590 * 120.02458 * 180.28136 * 3 2 1 29 29 H 1.09002 * 109.47031 * 59.99764 * 1 2 3 30 30 H 1.09000 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46855 * 300.00472 * 1 2 3 32 32 H 1.08000 * 119.96231 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.93847 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.97847 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00046 * 180.02562 * 14 13 11 36 36 H 1.07998 * 120.50458 * 359.97438 * 23 22 21 37 37 H 1.07998 * 119.53967 * 180.31132 * 24 23 22 38 38 H 1.08001 * 119.54236 * 180.02562 * 26 25 24 39 39 H 1.08004 * 120.50880 * 180.02562 * 27 26 25 40 40 H 1.08001 * 120.05892 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9166 3.6069 -0.0011 6 6 3.2961 3.6836 -0.0005 7 6 4.0569 2.5219 0.0000 8 7 5.4560 2.5997 0.0000 9 6 6.3073 2.1863 0.9887 10 16 5.8497 1.4462 2.5209 11 6 7.4436 1.2046 3.2321 12 1 8.3279 1.5072 2.6910 13 6 7.5622 0.6315 4.4894 14 7 8.7525 0.4560 5.0230 15 14 6.0327 0.1086 5.4256 16 1 5.7028 -1.2994 5.0879 17 1 6.2826 0.2222 6.8850 18 1 4.8967 0.9873 5.0481 19 7 7.5320 2.4500 0.5833 20 7 7.5042 2.9869 -0.5838 21 6 6.2604 3.1082 -0.9936 22 6 5.8115 3.6823 -2.2784 23 6 4.5062 3.4757 -2.7425 24 6 4.1280 4.0354 -3.9447 25 7 4.9797 4.7465 -4.6592 26 6 6.2199 4.9606 -4.2621 27 6 6.6810 4.4439 -3.0697 28 6 3.4299 1.2839 -0.0059 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2120 2.3185 -0.0014 33 1 1.3265 4.5115 -0.0019 34 1 3.7830 4.6476 -0.0014 35 1 8.8355 0.0549 5.9023 36 1 3.8053 2.8907 -2.1655 37 1 3.1222 3.8861 -4.3086 38 1 6.8825 5.5493 -4.8791 39 1 7.6971 4.6234 -2.7508 40 1 4.0194 0.3789 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004921913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:16 Heat of formation + Delta-G solvation = 114.829793 kcal Electronic energy + Delta-G solvation = -27954.054010 eV Core-core repulsion = 24055.388785 eV Total energy + Delta-G solvation = -3898.665226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.089 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54664 -40.37308 -39.94425 -37.97182 -34.50435 -33.35314 -32.70916 -31.36493 -31.00483 -29.61778 -29.44160 -27.57738 -25.95409 -24.54398 -23.88902 -23.21314 -22.76639 -21.66610 -20.79265 -19.18285 -17.83390 -17.24458 -16.76669 -16.39807 -16.28412 -16.11233 -16.07627 -15.76601 -15.37879 -15.33563 -15.05379 -14.13063 -13.98019 -13.88392 -13.78152 -13.70824 -13.09486 -12.94720 -12.68094 -12.22423 -11.98603 -11.82900 -11.47706 -11.39731 -11.33228 -11.25790 -11.07574 -10.69621 -10.44961 -10.23170 -10.13699 -9.64927 -9.45996 -9.29284 -9.13220 -9.08359 -8.83764 -8.49584 -7.19347 -6.50087 -4.31106 0.59477 0.84828 1.01838 1.12262 1.93902 2.22388 2.65712 3.06146 3.09235 3.13837 3.23770 3.26268 3.33286 3.82108 4.00493 4.14080 4.30869 4.33706 4.45323 4.63006 4.67417 4.77244 4.84410 4.87504 4.88340 4.91951 5.01934 5.05001 5.15793 5.17847 5.43101 5.49772 5.55330 5.70896 5.74687 5.83439 5.89465 6.04067 6.12559 6.20039 6.30271 6.35477 6.53802 7.03944 7.16993 7.75132 7.83958 8.54393 8.87573 9.07452 10.58637 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.008899 B = 0.004405 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.782745 B = 6354.259200 C = 9022.771327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.143 3.857 4 C -0.199 4.199 5 C -0.066 4.066 6 C -0.140 4.140 7 C 0.165 3.835 8 N -0.434 5.434 9 C 0.204 3.796 10 S 0.083 5.917 11 C -0.533 4.533 12 H 0.123 0.877 13 C 0.104 3.896 14 N -0.856 5.856 15 Si 0.840 3.160 16 H -0.260 1.260 17 H -0.262 1.262 18 H -0.239 1.239 19 N -0.283 5.283 20 N -0.248 5.248 21 C 0.172 3.828 22 C 0.053 3.947 23 C -0.168 4.168 24 C 0.103 3.897 25 N -0.488 5.488 26 C 0.101 3.899 27 C -0.138 4.138 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.276 0.724 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.271 4.874 -12.979 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.097 3.903 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.160 4.160 7 C 0.073 3.927 8 N -0.128 5.128 9 C -0.164 4.164 10 S 0.316 5.684 11 C -0.681 4.681 12 H 0.141 0.859 13 C -0.107 4.107 14 N -0.490 5.490 15 Si 0.664 3.336 16 H -0.185 1.185 17 H -0.187 1.187 18 H -0.164 1.164 19 N -0.129 5.129 20 N -0.090 5.090 21 C -0.092 4.092 22 C 0.043 3.957 23 C -0.190 4.190 24 C -0.053 4.053 25 N -0.197 5.197 26 C -0.055 4.055 27 C -0.160 4.160 28 C -0.155 4.155 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.800 4.718 -13.017 23.348 hybrid contribution -0.535 -0.429 1.119 1.312 sum -19.335 4.288 -11.898 23.104 Atomic orbital electron populations 1.23115 0.78028 1.04273 1.01448 1.86123 1.21582 1.26289 1.88377 1.18618 0.91257 0.84632 0.95789 1.21361 1.00445 0.92059 1.07928 1.20779 0.93281 0.97520 0.96937 1.21101 0.94055 0.97426 1.03388 1.17115 0.80103 0.93523 1.01931 1.43628 1.04639 1.49500 1.15062 1.27883 0.88134 1.02438 0.97919 1.83043 1.15159 1.67997 1.02174 1.22598 0.90886 1.48228 1.06364 0.85895 1.24645 0.96300 0.93898 0.95868 1.69899 1.22009 1.40152 1.16924 0.87044 0.83796 0.81285 0.81500 1.18483 1.18682 1.16351 1.74974 1.15897 1.17491 1.04493 1.74327 1.15056 1.13455 1.06119 1.22511 0.87408 1.07037 0.92276 1.17784 0.93615 0.94975 0.89376 1.22442 0.96012 1.02042 0.98468 1.22555 0.99100 0.93080 0.90602 1.67642 1.03742 1.14472 1.33892 1.22686 0.92269 0.96841 0.93725 1.22239 1.01320 0.97247 0.95222 1.20388 0.92251 0.97836 1.05043 0.92480 0.88006 0.92372 0.84668 0.84537 0.85101 0.91326 0.84545 0.82609 0.82204 0.83469 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.48 10.49 -19.41 -0.20 -3.69 16 3 C 0.14 1.70 6.68 -39.24 -0.26 1.44 16 4 C -0.20 -1.83 9.04 -39.40 -0.36 -2.19 16 5 C -0.07 -0.62 10.03 -39.63 -0.40 -1.02 16 6 C -0.14 -1.74 8.05 -39.38 -0.32 -2.05 16 7 C 0.17 2.53 3.48 -83.64 -0.29 2.24 16 8 N -0.43 -8.20 2.86 -58.13 -0.17 -8.36 16 9 C 0.20 4.67 8.00 -87.70 -0.70 3.96 16 10 S 0.08 1.94 19.54 -107.50 -2.10 -0.16 16 11 C -0.53 -14.98 9.91 30.90 0.31 -14.67 16 12 H 0.12 3.86 7.15 -52.49 -0.38 3.48 16 13 C 0.10 2.88 5.50 -17.48 -0.10 2.78 16 14 N -0.86 -24.77 13.97 55.48 0.77 -24.00 16 15 Si 0.84 19.24 27.74 -169.99 -4.71 14.53 16 16 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.24 -5.21 6.73 56.52 0.38 -4.83 16 19 N -0.28 -7.05 11.03 30.81 0.34 -6.71 16 20 N -0.25 -5.47 12.06 32.60 0.39 -5.08 16 21 C 0.17 3.22 7.70 -153.60 -1.18 2.04 16 22 C 0.05 0.80 5.91 -104.65 -0.62 0.18 16 23 C -0.17 -2.11 8.59 -39.02 -0.34 -2.44 16 24 C 0.10 1.14 11.17 -17.62 -0.20 0.94 16 25 N -0.49 -5.90 10.35 -13.37 -0.14 -6.03 16 26 C 0.10 1.13 11.17 -17.62 -0.20 0.94 16 27 C -0.14 -1.80 9.80 -39.02 -0.38 -2.18 16 28 C -0.13 -1.96 9.79 -39.25 -0.38 -2.34 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.14 0.84 6.29 -52.49 -0.33 0.51 16 33 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.14 1.67 4.87 -52.49 -0.26 1.42 16 37 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.15 1.86 8.02 -52.48 -0.42 1.44 16 40 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -33.45 362.00 -8.65 -42.10 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.87 Total: 3.16 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -4.42 Total: -11.22 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 1.20 Total: -50.18 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.20 Total: -3.69 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.10 Total: -0.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.45 -8.65 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004921913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.930 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds