Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 117.00224 * 2 1 4 4 C 1.38807 * 120.02180 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.07884 * 180.02562 * 4 3 2 6 6 C 1.38164 * 120.12491 * 359.97438 * 5 4 3 7 7 C 1.38863 * 120.04325 * 0.02562 * 6 5 4 8 8 N 1.40122 * 120.04098 * 179.97438 * 7 6 5 9 9 C 1.36867 * 127.17861 * 114.97761 * 8 7 6 10 10 S 1.76201 * 126.40404 * 0.02562 * 9 8 7 11 11 C 1.76199 * 99.99986 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38687 * 119.99871 * 179.72328 * 11 10 9 14 14 N 1.31617 * 120.00032 * 180.27703 * 13 11 10 15 15 Si 1.86800 * 120.00050 * 0.28054 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99526 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00046 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99668 * 15 13 11 19 19 N 1.31671 * 107.19657 * 180.27625 * 9 8 7 20 20 N 1.28504 * 110.07361 * 359.58841 * 19 9 8 21 21 C 1.31520 * 109.99462 * 0.42047 * 20 19 9 22 22 C 1.47712 * 126.45809 * 179.74829 * 21 20 19 23 23 C 1.40073 * 120.93561 * 164.72302 * 22 21 20 24 24 C 1.37900 * 118.98286 * 179.70711 * 23 22 21 25 25 N 1.31966 * 120.91009 * 0.58270 * 24 23 22 26 26 C 1.31967 * 122.07439 * 359.70842 * 25 24 23 27 27 C 1.37887 * 120.91014 * 359.97438 * 26 25 24 28 28 C 1.38590 * 120.02458 * 180.28136 * 3 2 1 29 29 H 1.09002 * 109.47031 * 59.99764 * 1 2 3 30 30 H 1.09000 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46855 * 300.00472 * 1 2 3 32 32 H 1.08000 * 119.96231 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.93847 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.97847 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00046 * 180.02562 * 14 13 11 36 36 H 1.07998 * 120.50458 * 359.97438 * 23 22 21 37 37 H 1.07998 * 119.53967 * 180.31132 * 24 23 22 38 38 H 1.08001 * 119.54236 * 180.02562 * 26 25 24 39 39 H 1.08004 * 120.50880 * 180.02562 * 27 26 25 40 40 H 1.08001 * 120.05892 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3752 -0.0005 5 6 1.9166 3.6069 -0.0011 6 6 3.2961 3.6836 -0.0005 7 6 4.0569 2.5219 0.0000 8 7 5.4560 2.5997 0.0000 9 6 6.3073 2.1863 0.9887 10 16 5.8497 1.4462 2.5209 11 6 7.4436 1.2046 3.2321 12 1 8.3279 1.5072 2.6910 13 6 7.5622 0.6315 4.4894 14 7 8.7525 0.4560 5.0230 15 14 6.0327 0.1086 5.4256 16 1 5.7028 -1.2994 5.0879 17 1 6.2826 0.2222 6.8850 18 1 4.8967 0.9873 5.0481 19 7 7.5320 2.4500 0.5833 20 7 7.5042 2.9869 -0.5838 21 6 6.2604 3.1082 -0.9936 22 6 5.8115 3.6823 -2.2784 23 6 4.5062 3.4757 -2.7425 24 6 4.1280 4.0354 -3.9447 25 7 4.9797 4.7465 -4.6592 26 6 6.2199 4.9606 -4.2621 27 6 6.6810 4.4439 -3.0697 28 6 3.4299 1.2839 -0.0059 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2120 2.3185 -0.0014 33 1 1.3265 4.5115 -0.0019 34 1 3.7830 4.6476 -0.0014 35 1 8.8355 0.0549 5.9023 36 1 3.8053 2.8907 -2.1655 37 1 3.1222 3.8861 -4.3086 38 1 6.8825 5.5493 -4.8791 39 1 7.6971 4.6234 -2.7508 40 1 4.0194 0.3789 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004921913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = 93.933722 kcal Electronic energy + Delta-G solvation = -27954.960132 eV Core-core repulsion = 24055.388785 eV Total energy + Delta-G solvation = -3899.571348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.089 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.10722 -41.27224 -40.93608 -38.90361 -35.78067 -34.82028 -34.53527 -32.32514 -31.91151 -31.00832 -30.60741 -28.17455 -28.05321 -25.81892 -25.06109 -24.25013 -23.69013 -23.10617 -22.01896 -20.45570 -19.50837 -18.34204 -17.86331 -17.56047 -17.37947 -17.25307 -17.17182 -16.91649 -16.62449 -16.59174 -16.55620 -15.09630 -14.99598 -14.95161 -14.86806 -14.73050 -14.68004 -13.92884 -13.72374 -13.44775 -13.24325 -13.17144 -13.04353 -12.81217 -12.72074 -12.30168 -12.16003 -12.05904 -11.94911 -11.84887 -11.69844 -11.26517 -11.12709 -10.63683 -10.47389 -10.22710 -10.06997 -9.37563 -9.04450 -8.59774 -6.43789 -0.58132 -0.14793 0.08563 0.22396 0.24552 0.77190 1.19968 1.26862 1.33995 1.47266 1.65424 2.09176 2.23546 2.34249 2.43778 2.77461 2.79205 2.91206 3.50575 3.57853 3.66203 3.88096 3.89643 3.93440 4.01411 4.08504 4.09091 4.23171 4.40353 4.41689 4.47386 4.50593 4.55566 4.61548 4.81069 4.81757 4.87508 5.03674 5.17621 5.19638 5.21699 5.36779 5.59678 5.66404 5.83617 6.24956 6.32879 6.75304 6.89126 7.40747 8.54223 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.008899 B = 0.004405 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.782745 B = 6354.259200 C = 9022.771327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.144 3.856 4 C -0.176 4.176 5 C -0.047 4.047 6 C -0.143 4.143 7 C 0.127 3.873 8 N -0.421 5.421 9 C 0.181 3.819 10 S 0.109 5.891 11 C -0.561 4.561 12 H 0.070 0.930 13 C 0.052 3.948 14 N -0.905 5.905 15 Si 0.908 3.092 16 H -0.250 1.250 17 H -0.246 1.246 18 H -0.220 1.220 19 N -0.331 5.331 20 N -0.294 5.294 21 C 0.202 3.798 22 C 0.020 3.980 23 C -0.157 4.157 24 C 0.113 3.887 25 N -0.490 5.490 26 C 0.111 3.889 27 C -0.141 4.141 28 C -0.158 4.158 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.128 0.872 35 H 0.283 0.717 36 H 0.142 0.858 37 H 0.195 0.805 38 H 0.194 0.806 39 H 0.143 0.857 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.168 6.183 -14.788 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.098 3.902 4 C -0.194 4.194 5 C -0.065 4.065 6 C -0.163 4.163 7 C 0.038 3.962 8 N -0.113 5.113 9 C -0.190 4.190 10 S 0.341 5.659 11 C -0.709 4.709 12 H 0.088 0.912 13 C -0.155 4.155 14 N -0.541 5.541 15 Si 0.726 3.274 16 H -0.174 1.174 17 H -0.170 1.170 18 H -0.144 1.144 19 N -0.175 5.175 20 N -0.134 5.134 21 C -0.064 4.064 22 C 0.009 3.991 23 C -0.179 4.179 24 C -0.043 4.043 25 N -0.200 5.200 26 C -0.045 4.045 27 C -0.164 4.164 28 C -0.179 4.179 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.196 0.804 33 H 0.198 0.802 34 H 0.146 0.854 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.212 0.788 38 H 0.211 0.789 39 H 0.161 0.839 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.715 6.048 -14.879 29.476 hybrid contribution 1.149 -0.734 1.314 1.894 sum -23.566 5.314 -13.565 27.706 Atomic orbital electron populations 1.23497 0.75365 1.05950 1.03192 1.86109 1.24348 1.26252 1.88140 1.18660 0.90287 0.86051 0.95227 1.21819 1.02303 0.90601 1.04724 1.21242 0.91775 0.99310 0.94190 1.21211 0.95445 0.96002 1.03664 1.17460 0.78081 0.95151 1.05557 1.43767 1.06252 1.47735 1.13560 1.27724 0.88725 1.03799 0.98742 1.82288 1.11334 1.69796 1.02464 1.22597 0.92227 1.49030 1.07060 0.91158 1.25668 1.00114 0.93274 0.96476 1.70020 1.24881 1.41367 1.17824 0.86030 0.79506 0.81464 0.80351 1.17363 1.16982 1.14357 1.74849 1.17885 1.18675 1.06107 1.74228 1.17201 1.16053 1.05887 1.23305 0.86651 1.03620 0.92849 1.17964 0.95548 0.97190 0.88389 1.22537 0.94720 1.01648 0.99012 1.23123 1.00405 0.91445 0.89345 1.67776 1.03989 1.14334 1.33905 1.23151 0.92498 0.96007 0.92871 1.22353 1.01029 0.97177 0.95798 1.20251 0.93804 0.96461 1.07347 0.90196 0.86716 0.90924 0.80437 0.80231 0.85399 0.90680 0.84052 0.78812 0.78910 0.83944 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.68 10.49 -92.35 -0.97 -7.65 16 3 C 0.14 3.05 6.68 22.49 0.15 3.20 16 4 C -0.18 -2.32 9.04 22.39 0.20 -2.12 16 5 C -0.05 -0.64 10.03 22.24 0.22 -0.42 16 6 C -0.14 -3.24 8.05 22.40 0.18 -3.06 16 7 C 0.13 3.89 3.48 38.09 0.13 4.02 16 8 N -0.42 -16.69 2.86 -337.84 -0.96 -17.66 16 9 C 0.18 8.90 8.00 179.33 1.43 10.34 16 10 S 0.11 5.41 19.54 -56.49 -1.10 4.30 16 11 C -0.56 -33.96 9.91 67.93 0.67 -33.28 16 12 H 0.07 4.88 7.15 -2.91 -0.02 4.86 16 13 C 0.05 3.01 5.50 84.83 0.47 3.48 16 14 N -0.91 -55.38 13.97 21.63 0.30 -55.08 16 15 Si 0.91 40.38 27.74 68.60 1.90 42.29 16 16 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.22 -9.03 6.73 99.48 0.67 -8.37 16 19 N -0.33 -18.02 11.03 -56.44 -0.62 -18.64 16 20 N -0.29 -14.01 12.06 -50.76 -0.61 -14.63 16 21 C 0.20 7.97 7.70 136.09 1.05 9.02 16 22 C 0.02 0.59 5.91 -19.88 -0.12 0.47 16 23 C -0.16 -3.63 8.59 22.64 0.19 -3.43 16 24 C 0.11 2.06 11.17 84.59 0.94 3.01 16 25 N -0.49 -10.08 10.35 -196.20 -2.03 -12.11 16 26 C 0.11 2.20 11.17 84.59 0.94 3.14 16 27 C -0.14 -3.61 9.80 22.63 0.22 -3.38 16 28 C -0.16 -4.60 9.79 22.48 0.22 -4.38 16 29 H 0.08 0.33 7.66 -2.39 -0.02 0.31 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.43 7.66 -2.38 -0.02 0.41 16 32 H 0.18 0.89 6.29 -2.91 -0.02 0.87 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.28 15.68 8.31 -92.70 -0.77 14.91 16 36 H 0.14 3.16 4.87 -2.91 -0.01 3.15 16 37 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.14 3.72 8.02 -2.91 -0.02 3.70 16 40 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -83.08 362.00 5.00 -78.08 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.06 Total: 13.26 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 8.03 Total: -12.17 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -3.93 Total: -118.12 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.97 Total: -7.65 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.90 Total: 42.29 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.10 Total: 4.30 kcal Total: -83.08 5.00 -78.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004921913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.017 kcal (2) G-P(sol) polarization free energy of solvation -83.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds