Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21299 * 120.00359 * 2 1 4 4 N 1.34781 * 120.00345 * 180.02562 * 2 1 3 5 5 C 1.40112 * 120.00292 * 185.35573 * 4 2 1 6 6 C 1.38729 * 120.09355 * 21.69648 * 5 4 2 7 7 C 1.38187 * 119.98696 * 180.02562 * 6 5 4 8 8 C 1.38276 * 120.16626 * 359.97438 * 7 6 5 9 9 C 1.38244 * 120.17850 * 0.02562 * 8 7 6 10 10 C 1.38545 * 120.01426 * 0.02562 * 9 8 7 11 11 O 1.35976 * 120.08082 * 180.02562 * 10 9 8 12 12 C 1.42901 * 117.00243 * 359.95416 * 11 10 9 13 13 C 1.50694 * 109.47052 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00495 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99834 * 179.97438 * 13 12 11 16 16 C 1.39241 * 120.00126 * 185.18457 * 15 13 12 17 17 C 1.39477 * 119.83328 * 214.56852 * 16 15 13 18 18 C 1.36377 * 120.16710 * 179.75977 * 17 16 15 19 19 C 1.40869 * 119.82850 * 0.51580 * 18 17 16 20 20 C 1.41146 * 120.16443 * 179.72264 * 19 18 17 21 21 H 1.08007 * 119.99954 * 211.21554 * 20 19 18 22 22 C 1.39905 * 120.00233 * 31.20629 * 20 19 18 23 23 N 1.30867 * 120.00078 * 7.97062 * 22 20 19 24 24 Si 1.86803 * 119.99989 * 187.97416 * 22 20 19 25 25 H 1.48497 * 109.47533 * 90.00053 * 24 22 20 26 26 H 1.48504 * 109.47011 * 209.99964 * 24 22 20 27 27 H 1.48502 * 109.47075 * 329.99727 * 24 22 20 28 28 C 1.40873 * 119.67131 * 359.73743 * 19 18 17 29 29 C 1.36373 * 119.82818 * 0.02562 * 28 19 18 30 30 H 1.09007 * 109.46906 * 269.99723 * 1 2 3 31 31 H 1.08995 * 109.47455 * 29.99418 * 1 2 3 32 32 H 1.08994 * 109.47436 * 149.99865 * 1 2 3 33 33 H 0.96999 * 119.99582 * 5.35375 * 4 2 1 34 34 H 1.08001 * 120.00305 * 0.02562 * 6 5 4 35 35 H 1.08007 * 119.91925 * 179.97438 * 7 6 5 36 36 H 1.08000 * 119.90870 * 179.74211 * 8 7 6 37 37 H 1.08006 * 119.98829 * 180.02562 * 9 8 7 38 38 H 1.08990 * 109.46783 * 299.99987 * 12 11 10 39 39 H 1.09007 * 109.46979 * 59.99841 * 12 11 10 40 40 H 0.96998 * 119.99765 * 5.19056 * 15 13 12 41 41 H 1.07999 * 119.91854 * 0.02618 * 17 16 15 42 42 H 1.08001 * 120.08343 * 180.25173 * 18 17 16 43 43 H 0.96999 * 119.99969 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.08211 * 179.97438 * 28 19 18 45 45 H 1.07995 * 119.91517 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5775 -1.1699 0.1127 6 6 4.2328 -0.0781 0.6633 7 6 5.6103 -0.0829 0.7735 8 6 6.3385 -1.1741 0.3365 9 6 5.6925 -2.2657 -0.2132 10 6 4.3118 -2.2684 -0.3282 11 8 3.6750 -3.3416 -0.8682 12 6 4.4921 -4.4325 -1.2976 13 6 3.6185 -5.5221 -1.8637 14 8 2.4145 -5.3789 -1.8958 15 7 4.1750 -6.6558 -2.3342 16 6 3.3803 -7.6159 -2.9551 17 6 3.6812 -8.9693 -2.8034 18 6 2.9045 -9.9156 -3.4044 19 6 1.8025 -9.5226 -4.1890 20 6 0.9974 -10.4958 -4.8190 21 1 0.5158 -10.2718 -5.7595 22 6 0.8232 -11.7507 -4.2254 23 7 1.2747 -11.9713 -3.0171 24 14 -0.0535 -13.1114 -5.1578 25 1 0.9374 -13.8944 -5.9389 26 1 -0.7432 -14.0067 -4.1944 27 1 -1.0519 -12.5149 -6.0812 28 6 1.5081 -8.1535 -4.3418 29 6 2.2910 -7.2190 -3.7307 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6991 -2.0054 -0.0793 34 1 3.6665 0.7754 1.0057 35 1 6.1194 0.7679 1.2019 36 1 7.4152 -1.1717 0.4208 37 1 6.2643 -3.1166 -0.5531 38 1 5.1855 -4.0872 -2.0642 39 1 5.0538 -4.8220 -0.4484 40 1 5.1291 -6.8029 -2.2403 41 1 4.5288 -9.2690 -2.2049 42 1 3.1363 -10.9634 -3.2827 43 1 1.1536 -12.8412 -2.6054 44 1 0.6650 -7.8448 -4.9421 45 1 2.0669 -6.1690 -3.8473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005280977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = -50.576947 kcal Electronic energy + Delta-G solvation = -29358.762701 eV Core-core repulsion = 25113.712373 eV Total energy + Delta-G solvation = -4245.050328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07914 -40.02118 -39.22063 -37.63040 -36.97397 -34.99898 -34.53965 -33.05383 -31.24942 -30.50390 -29.77916 -29.50525 -28.72815 -27.79880 -24.91360 -23.41245 -22.49532 -21.74188 -20.95536 -20.61158 -19.77680 -18.78513 -17.69059 -17.40820 -17.21087 -16.98484 -16.49650 -16.19200 -15.78605 -15.25765 -15.20008 -15.08552 -14.50669 -14.43890 -13.97646 -13.88502 -13.83186 -13.29072 -12.95161 -12.91902 -12.84349 -12.66718 -12.40229 -12.18721 -11.91524 -11.84004 -11.70738 -11.46837 -11.30718 -11.19229 -11.04146 -10.81134 -10.79654 -10.04390 -9.95457 -9.60374 -9.52024 -9.27151 -9.00663 -8.82491 -8.00104 -7.63554 -7.00423 -6.74331 -4.39137 1.01062 1.17608 2.33478 2.37857 2.53803 2.86365 2.91610 3.01104 3.05498 3.08912 3.25944 3.58860 3.79193 3.91312 4.42085 4.57169 4.60488 4.62906 4.80407 4.89237 4.90463 4.90860 5.02427 5.07457 5.19394 5.30593 5.49818 5.59515 5.60493 5.85239 6.01765 6.10548 6.21118 6.31592 6.32974 6.55827 6.64434 6.81304 6.97911 7.07558 7.10415 7.17956 7.20907 7.52099 7.61478 7.77190 7.83489 7.96911 8.13580 8.21166 8.51279 8.60636 8.83565 8.90820 10.19086 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.001846 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.282724 B =15164.957009 C =16386.765417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.534 6.534 4 N -0.660 5.660 5 C 0.123 3.877 6 C -0.102 4.102 7 C -0.137 4.137 8 C -0.100 4.100 9 C -0.191 4.191 10 C 0.100 3.900 11 O -0.291 6.291 12 C 0.046 3.954 13 C 0.499 3.501 14 O -0.509 6.509 15 N -0.645 5.645 16 C -0.003 4.003 17 C -0.114 4.114 18 C -0.144 4.144 19 C 0.106 3.894 20 C -0.458 4.458 21 H 0.078 0.922 22 C 0.071 3.929 23 N -0.803 5.803 24 Si 0.914 3.086 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.209 4.209 29 C -0.078 4.078 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.421 0.579 34 H 0.157 0.843 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.396 0.604 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.280 0.720 44 H 0.097 0.903 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.868 16.691 7.869 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.301 3.699 3 O -0.411 6.411 4 N -0.305 5.305 5 C 0.027 3.973 6 C -0.122 4.122 7 C -0.156 4.156 8 C -0.119 4.119 9 C -0.210 4.210 10 C 0.053 3.947 11 O -0.204 6.204 12 C -0.033 4.033 13 C 0.284 3.716 14 O -0.384 6.384 15 N -0.290 5.290 16 C -0.095 4.095 17 C -0.134 4.134 18 C -0.164 4.164 19 C 0.103 3.897 20 C -0.488 4.488 21 H 0.096 0.904 22 C -0.146 4.146 23 N -0.429 5.429 24 Si 0.738 3.262 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.229 4.229 29 C -0.098 4.098 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.258 0.742 34 H 0.174 0.826 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.230 0.770 41 H 0.110 0.890 42 H 0.142 0.858 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.113 17.356 7.996 20.391 hybrid contribution 0.163 -1.367 -0.255 1.400 sum 7.276 15.989 7.742 19.197 Atomic orbital electron populations 1.21898 0.90507 1.05591 1.05201 1.21023 0.91036 0.82872 0.74996 1.90643 1.70269 1.31527 1.48645 1.43570 1.05054 1.10583 1.71279 1.17165 0.82905 0.94488 1.02695 1.21444 0.94827 0.98036 0.97924 1.20998 0.93511 0.98864 1.02252 1.20937 0.99926 0.92947 0.98057 1.21081 0.92256 1.01250 1.06411 1.18734 0.91097 0.87895 0.96986 1.86071 1.34664 1.24417 1.75230 1.22494 0.93516 0.86681 1.00570 1.19905 0.88862 0.83314 0.79553 1.90742 1.14354 1.78941 1.54331 1.42793 1.10771 1.17919 1.57517 1.17127 0.99890 0.86998 1.05469 1.20243 1.00465 0.91115 1.01609 1.20964 0.95010 0.98575 1.01860 1.17703 0.90299 0.91403 0.90280 1.19552 1.26028 0.96444 1.06815 0.90403 1.25909 0.94748 0.99426 0.94469 1.69790 1.37151 1.23782 1.12191 0.86223 0.79884 0.80120 0.79944 1.19372 1.20299 1.18658 1.20733 1.01656 0.93283 1.07233 1.20232 0.95165 0.98285 0.96139 0.88368 0.88434 0.89518 0.74200 0.82621 0.85580 0.85661 0.84964 0.89102 0.89178 0.76995 0.89002 0.85821 0.90925 0.88518 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.31 36.00 0.37 -0.78 16 2 C 0.51 5.50 7.77 -10.99 -0.09 5.42 16 3 O -0.53 -7.34 14.10 5.54 0.08 -7.26 16 4 N -0.66 -7.35 5.31 -9.75 -0.05 -7.40 16 5 C 0.12 1.51 6.49 -83.50 -0.54 0.97 16 6 C -0.10 -1.19 8.76 -39.42 -0.35 -1.53 16 7 C -0.14 -1.32 10.04 -39.59 -0.40 -1.71 16 8 C -0.10 -0.88 10.04 -39.57 -0.40 -1.28 16 9 C -0.19 -1.85 9.04 -39.47 -0.36 -2.21 16 10 C 0.10 1.20 6.70 -39.07 -0.26 0.94 16 11 O -0.29 -3.89 9.05 -39.58 -0.36 -4.24 16 12 C 0.05 0.52 5.22 36.00 0.19 0.71 16 13 C 0.50 8.14 7.62 -10.99 -0.08 8.05 16 14 O -0.51 -10.70 14.25 -14.35 -0.20 -10.91 16 15 N -0.65 -10.40 5.30 -9.74 -0.05 -10.45 16 16 C 0.00 -0.06 6.26 -83.57 -0.52 -0.59 16 17 C -0.11 -2.49 9.90 -39.79 -0.39 -2.89 16 18 C -0.14 -3.59 8.59 -39.26 -0.34 -3.92 16 19 C 0.11 2.77 5.53 -106.80 -0.59 2.17 16 20 C -0.46 -11.92 9.04 -37.86 -0.34 -12.27 16 21 H 0.08 1.95 7.86 -52.48 -0.41 1.53 16 22 C 0.07 1.75 5.28 -17.34 -0.09 1.66 16 23 N -0.80 -20.42 10.85 55.55 0.60 -19.82 16 24 Si 0.91 18.44 29.57 -169.99 -5.03 13.41 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 28 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 29 C -0.08 -1.82 8.57 -39.79 -0.34 -2.16 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.42 4.32 8.28 -40.82 -0.34 3.98 16 34 H 0.16 1.90 5.56 -52.49 -0.29 1.61 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 38 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 39 H 0.09 0.77 7.66 -51.93 -0.40 0.37 16 40 H 0.40 4.66 8.82 -40.82 -0.36 4.30 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 3.16 6.30 -52.49 -0.33 2.83 16 43 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 44 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.10 2.29 6.50 -52.49 -0.34 1.95 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -33.20 384.55 -9.42 -42.63 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -5.29 Total: 13.21 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -4.91 Total: -14.97 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.50 Total: -37.66 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.48 Total: -22.41 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.20 -9.42 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005280977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.951 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds