Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30956 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48500 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47460 * 300.00540 * 3 2 1 6 6 H 1.48504 * 109.46700 * 60.00503 * 3 2 1 7 7 C 1.39698 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00013 * 186.32090 * 7 2 1 9 9 N 1.36010 * 119.99662 * 6.31780 * 7 2 1 10 10 C 1.34508 * 126.01864 * 203.44772 * 9 7 2 11 11 O 1.21646 * 124.94869 * 0.06369 * 10 9 7 12 12 C 1.47188 * 110.10439 * 180.02562 * 10 9 7 13 13 O 1.35351 * 125.41234 * 179.73643 * 12 10 9 14 14 C 1.35903 * 109.18059 * 0.02562 * 12 10 9 15 15 C 1.46157 * 126.67731 * 179.97438 * 14 12 10 16 16 O 1.21751 * 120.00004 * 292.73040 * 15 14 12 17 17 C 1.47881 * 120.00327 * 112.73057 * 15 14 12 18 18 C 1.39646 * 120.14276 * 3.44589 * 17 15 14 19 19 C 1.37927 * 119.84331 * 179.72199 * 18 17 15 20 20 C 1.38399 * 120.15092 * 0.55404 * 19 18 17 21 21 C 1.38390 * 120.29927 * 359.71986 * 20 19 18 22 22 C 1.37935 * 120.14842 * 0.02562 * 21 20 19 23 23 C 1.46771 * 126.01511 * 23.49696 * 9 7 2 24 24 H 1.08998 * 110.12833 * 299.11762 * 23 9 7 25 25 C 1.50698 * 110.12886 * 60.73771 * 23 9 7 26 26 C 1.33393 * 125.20201 * 223.29737 * 25 23 9 27 27 C 1.38419 * 114.91950 * 179.85709 * 26 25 23 28 28 C 1.33383 * 114.92203 * 0.43172 * 27 26 25 29 29 S 1.75880 * 125.20578 * 43.60231 * 25 23 9 30 30 H 0.96996 * 120.00239 * 359.97438 * 1 2 3 31 31 H 0.96697 * 113.99661 * 0.03114 * 13 12 10 32 32 H 1.07998 * 120.07889 * 359.97438 * 18 17 15 33 33 H 1.07995 * 119.92921 * 180.27894 * 19 18 17 34 34 H 1.07998 * 119.84640 * 179.69908 * 20 19 18 35 35 H 1.07999 * 119.92267 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.07204 * 179.97438 * 22 21 20 37 37 H 1.08001 * 122.53705 * 0.02562 * 26 25 23 38 38 H 1.08005 * 122.54168 * 180.19960 * 27 26 25 39 39 H 1.08007 * 125.20505 * 179.74730 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 3.7035 1.3464 0.0006 5 1 1.8847 2.3966 -1.2124 6 1 1.8848 2.3963 1.2126 7 6 2.0081 -1.2098 -0.0005 8 1 3.0832 -1.2126 0.1024 9 7 1.3343 -2.3840 -0.1307 10 6 1.7629 -3.5915 0.2786 11 8 2.8262 -3.8034 0.8301 12 6 0.7575 -4.6190 -0.0373 13 8 0.8741 -5.9400 0.2339 14 6 -0.3038 -4.0318 -0.6504 15 6 -1.5146 -4.6972 -1.1271 16 8 -1.4536 -5.4764 -2.0607 17 6 -2.8138 -4.4242 -0.4756 18 6 -2.8999 -3.4779 0.5477 19 6 -4.1159 -3.2239 1.1472 20 6 -5.2467 -3.9128 0.7446 21 6 -5.1672 -4.8560 -0.2650 22 6 -3.9585 -5.1160 -0.8766 23 6 0.0118 -2.5568 -0.7434 24 1 -0.7333 -1.9787 -0.1967 25 6 0.0479 -2.1229 -2.1861 26 6 -0.8873 -1.3899 -2.7922 27 6 -0.6370 -1.1111 -4.1247 28 6 0.4970 -1.6251 -4.6031 29 16 1.3259 -2.5117 -3.3302 30 1 -0.4850 0.8400 0.0004 31 1 1.7022 -6.1800 0.6716 32 1 -2.0173 -2.9431 0.8662 33 1 -4.1849 -2.4891 1.9356 34 1 -6.1954 -3.7136 1.2207 35 1 -6.0536 -5.3897 -0.5746 36 1 -3.8978 -5.8526 -1.6640 37 1 -1.7715 -1.0383 -2.2812 38 1 -1.3108 -0.5249 -4.7322 39 1 0.8519 -1.5142 -5.6172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005483311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -7.371935 kcal Electronic energy + Delta-G solvation = -29379.359382 eV Core-core repulsion = 25345.383678 eV Total energy + Delta-G solvation = -4033.975704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.071 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56065 -39.29011 -37.74044 -37.40610 -36.74975 -35.40183 -33.32392 -31.50219 -30.84605 -30.34293 -29.46107 -26.15420 -25.40865 -24.18314 -22.81283 -22.26050 -21.60262 -20.37916 -18.97882 -18.72097 -17.90317 -17.30597 -17.01881 -16.12332 -15.79408 -15.44150 -15.25218 -14.93364 -14.49188 -14.31631 -14.28501 -13.99840 -13.80355 -13.59684 -13.36253 -12.99856 -12.75969 -12.56594 -12.30425 -12.23348 -12.02846 -11.87107 -11.64668 -11.57854 -11.31652 -11.12410 -10.92830 -10.81269 -10.54584 -10.10156 -9.70328 -9.66198 -8.88526 -8.85753 -8.76083 -8.30061 -8.09248 -7.96868 -7.75744 -6.73174 -4.24741 0.82595 1.48220 1.61927 1.68406 2.30320 2.69437 2.72051 2.99924 3.07868 3.12663 3.36678 3.78054 3.91071 3.98666 4.11531 4.26907 4.58503 4.84107 4.91886 5.02929 5.10172 5.18488 5.47717 5.50647 5.55675 5.57952 5.65232 5.82710 5.99474 6.05647 6.14573 6.18144 6.41583 6.46512 6.52451 6.58591 6.66529 6.75457 6.95871 6.99150 7.10718 7.15149 7.43654 7.74675 7.85392 8.09698 8.70713 8.82460 9.57655 10.28029 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.004863 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.318103 B = 5756.693620 C = 5796.993187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.048 3.952 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.294 4.294 8 H 0.111 0.889 9 N -0.387 5.387 10 C 0.424 3.576 11 O -0.582 6.582 12 C 0.112 3.888 13 O -0.449 6.449 14 C -0.282 4.282 15 C 0.482 3.518 16 O -0.447 6.447 17 C -0.153 4.153 18 C -0.061 4.061 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.139 4.139 22 C -0.066 4.066 23 C 0.249 3.751 24 H 0.154 0.846 25 C -0.116 4.116 26 C -0.134 4.134 27 C -0.131 4.131 28 C -0.238 4.238 29 S 0.110 5.890 30 H 0.280 0.720 31 H 0.405 0.595 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -2.170 -2.107 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.161 4.161 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.422 4.422 8 H 0.129 0.871 9 N -0.102 5.102 10 C 0.214 3.786 11 O -0.470 6.470 12 C 0.060 3.940 13 O -0.251 6.251 14 C -0.289 4.289 15 C 0.360 3.640 16 O -0.322 6.322 17 C -0.154 4.154 18 C -0.079 4.079 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.157 4.157 22 C -0.084 4.084 23 C 0.143 3.857 24 H 0.170 0.830 25 C -0.235 4.235 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.374 4.374 29 S 0.374 5.626 30 H 0.091 0.909 31 H 0.258 0.742 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.110 -3.285 -2.519 9.105 hybrid contribution -0.559 1.700 0.174 1.798 sum -8.669 -1.585 -2.345 9.119 Atomic orbital electron populations 1.69406 1.06412 1.28922 1.43861 1.25494 0.95586 1.00090 0.94912 0.85737 0.80077 0.80157 0.78271 1.18717 1.20029 1.20120 1.19609 0.92803 0.80625 1.49115 0.87149 1.43377 1.15324 1.06278 1.45194 1.18455 0.88547 0.84216 0.87395 1.90677 1.24487 1.82615 1.49237 1.21213 0.94328 0.83820 0.94672 1.84720 1.44689 1.19363 1.76320 1.21842 0.97404 0.96388 1.13294 1.19351 0.86347 0.77778 0.80528 1.90613 1.88056 1.29644 1.23841 1.20512 0.94772 1.00316 0.99765 1.21654 0.98659 0.94585 0.92983 1.21173 0.92501 1.00494 1.00811 1.21366 0.98474 0.95260 0.96237 1.21078 0.97536 0.99398 0.97663 1.21342 0.91533 0.97506 0.98016 1.18840 0.89790 0.88486 0.88585 0.82965 1.24180 0.97901 1.03816 0.97584 1.19885 1.01298 1.01011 0.94176 1.20012 0.97820 1.02840 0.95626 1.25477 1.00936 1.08081 1.02891 1.84265 1.25374 1.52149 1.00829 0.90918 0.74169 0.84396 0.85413 0.85928 0.85753 0.85144 0.84650 0.85254 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.14 10.40 55.53 0.58 -18.56 16 2 C 0.05 1.10 5.26 -17.38 -0.09 1.01 16 3 Si 0.93 18.65 29.56 -169.99 -5.03 13.62 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.29 -7.35 9.57 -15.15 -0.15 -7.49 16 8 H 0.11 2.87 7.85 -52.49 -0.41 2.46 16 9 N -0.39 -9.33 2.64 -111.20 -0.29 -9.63 16 10 C 0.42 10.29 7.89 -12.75 -0.10 10.19 16 11 O -0.58 -15.46 17.60 5.23 0.09 -15.37 16 12 C 0.11 2.40 7.41 -36.79 -0.27 2.13 16 13 O -0.45 -8.36 13.55 -17.75 -0.24 -8.60 16 14 C -0.28 -5.84 4.27 -102.08 -0.44 -6.27 16 15 C 0.48 9.41 6.87 -32.46 -0.22 9.19 16 16 O -0.45 -9.51 17.13 5.14 0.09 -9.42 16 17 C -0.15 -2.53 5.88 -104.90 -0.62 -3.14 16 18 C -0.06 -0.93 9.36 -39.17 -0.37 -1.30 16 19 C -0.13 -1.66 10.03 -39.64 -0.40 -2.06 16 20 C -0.10 -1.05 10.04 -39.47 -0.40 -1.45 16 21 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 22 C -0.07 -0.94 9.60 -39.17 -0.38 -1.31 16 23 C 0.25 5.37 2.42 -69.88 -0.17 5.20 16 24 H 0.15 3.32 4.77 -51.93 -0.25 3.08 16 25 C -0.12 -2.42 4.53 -36.00 -0.16 -2.59 16 26 C -0.13 -2.54 10.00 -41.21 -0.41 -2.95 16 27 C -0.13 -2.23 10.18 -41.21 -0.42 -2.65 16 28 C -0.24 -4.04 11.23 29.04 0.33 -3.72 16 29 S 0.11 2.19 23.17 -107.50 -2.49 -0.30 16 30 H 0.28 5.92 8.30 -40.82 -0.34 5.58 16 31 H 0.40 5.95 8.85 45.56 0.40 6.36 16 32 H 0.14 2.28 5.61 -52.49 -0.29 1.99 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.79 7.66 -52.49 -0.40 1.39 16 37 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 39 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -29.81 361.34 -9.13 -38.94 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -2.62 Total: 13.07 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -4.66 Total: -9.21 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.28 Total: -28.19 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.06 Total: -33.39 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.49 Total: -0.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.81 -9.13 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005483311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.571 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds