Wall clock time and date at job start Tue Mar 31 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30960 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48500 * 109.47116 * 270.00229 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00090 * 3 2 1 6 6 H 1.48500 * 109.47067 * 150.00533 * 3 2 1 7 7 C 1.39694 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99961 * 172.91186 * 7 2 1 9 9 N 1.36005 * 120.00342 * 352.91346 * 7 2 1 10 10 C 1.34507 * 126.02074 * 157.50236 * 9 7 2 11 11 O 1.21650 * 124.95176 * 0.02724 * 10 9 7 12 12 C 1.47195 * 110.09833 * 180.02562 * 10 9 7 13 13 O 1.35350 * 125.40799 * 180.02562 * 12 10 9 14 14 C 1.35893 * 109.18639 * 359.97438 * 12 10 9 15 15 C 1.46165 * 126.67991 * 180.02562 * 14 12 10 16 16 O 1.21747 * 119.99773 * 66.54147 * 15 14 12 17 17 C 1.47876 * 119.99749 * 246.54314 * 15 14 12 18 18 C 1.39637 * 120.14989 * 5.97353 * 17 15 14 19 19 C 1.37930 * 119.84952 * 179.71745 * 18 17 15 20 20 C 1.38392 * 120.14638 * 0.55252 * 19 18 17 21 21 C 1.38390 * 120.30009 * 359.72029 * 20 19 18 22 22 C 1.37930 * 120.15100 * 359.97438 * 21 20 19 23 23 C 1.46778 * 126.01344 * 337.53554 * 9 7 2 24 24 H 1.09004 * 110.17836 * 60.77946 * 23 9 7 25 25 C 1.50693 * 110.12885 * 299.12887 * 23 9 7 26 26 C 1.33391 * 125.20309 * 138.19717 * 25 23 9 27 27 C 1.38424 * 114.92084 * 179.97438 * 26 25 23 28 28 C 1.33394 * 114.92170 * 0.02562 * 27 26 25 29 29 S 1.75879 * 109.59135 * 0.02562 * 28 27 26 30 30 H 0.96993 * 120.00033 * 359.97438 * 1 2 3 31 31 H 0.96706 * 114.00189 * 359.95764 * 13 12 10 32 32 H 1.08000 * 120.07828 * 359.97438 * 18 17 15 33 33 H 1.08001 * 119.92885 * 180.27032 * 19 18 17 34 34 H 1.07999 * 119.84991 * 179.69927 * 20 19 18 35 35 H 1.08006 * 119.92118 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.07414 * 179.97438 * 22 21 20 37 37 H 1.08000 * 122.54047 * 0.25395 * 26 25 23 38 38 H 1.08000 * 122.54266 * 180.02562 * 27 26 25 39 39 H 1.07999 * 125.20316 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.4910 2.0464 -1.4001 5 1 1.4411 2.6527 0.7000 6 1 3.5412 1.4401 0.6999 7 6 2.0080 -1.2098 -0.0005 8 1 3.0819 -1.2133 -0.1160 9 7 1.3358 -2.3832 0.1442 10 6 1.7676 -3.5956 -0.2469 11 8 2.8334 -3.8136 -0.7912 12 6 0.7624 -4.6201 0.0797 13 8 0.8797 -5.9438 -0.1771 14 6 -0.3018 -4.0260 0.6809 15 6 -1.5134 -4.6866 1.1625 16 8 -1.4525 -5.4628 2.0984 17 6 -2.8132 -4.4119 0.5130 18 6 -2.8696 -3.6212 -0.6365 19 6 -4.0846 -3.3738 -1.2407 20 6 -5.2474 -3.8979 -0.7036 21 6 -5.1993 -4.6778 0.4387 22 6 -3.9902 -4.9382 1.0493 23 6 0.0112 -2.5494 0.7542 24 1 -0.7331 -1.9797 0.1979 25 6 0.0417 -2.0973 2.1914 26 6 -0.9098 -1.3814 2.7927 27 6 -0.6633 -1.0832 4.1217 28 6 0.4887 -1.5564 4.5997 29 16 1.3378 -2.4318 3.3324 30 1 -0.4850 0.8400 0.0004 31 1 1.7082 -6.1882 -0.6119 32 1 -1.9635 -3.2076 -1.0540 33 1 -4.1292 -2.7659 -2.1323 34 1 -6.1967 -3.6972 -1.1778 35 1 -6.1105 -5.0834 0.8529 36 1 -3.9541 -5.5466 1.9409 37 1 -1.8067 -1.0626 2.2825 38 1 -1.3514 -0.5107 4.7260 39 1 0.8453 -1.4225 5.6103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005483637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:58 Heat of formation + Delta-G solvation = -7.633954 kcal Electronic energy + Delta-G solvation = -29379.682735 eV Core-core repulsion = 25345.695669 eV Total energy + Delta-G solvation = -4033.987066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55114 -39.29177 -37.73814 -37.40136 -36.74626 -35.39180 -33.32296 -31.49484 -30.84604 -30.35386 -29.45067 -26.15203 -25.39851 -24.18127 -22.78786 -22.28225 -21.59846 -20.37690 -18.96956 -18.70563 -17.90631 -17.30478 -17.00560 -16.11042 -15.80703 -15.43651 -15.23348 -14.92948 -14.53793 -14.32493 -14.26159 -14.00127 -13.72966 -13.62906 -13.35136 -13.00651 -12.76841 -12.55285 -12.30542 -12.23185 -12.02145 -11.87302 -11.65204 -11.56016 -11.29483 -11.12237 -10.96236 -10.79901 -10.58673 -10.09594 -9.69763 -9.66912 -8.88538 -8.85444 -8.75316 -8.30139 -8.08887 -7.96375 -7.75329 -6.73049 -4.23777 0.83149 1.48240 1.61814 1.68342 2.30887 2.70303 2.72833 3.00979 3.07427 3.11401 3.37172 3.78116 3.90654 3.99033 4.11847 4.27692 4.58473 4.84802 4.92195 5.02453 5.09715 5.18840 5.48393 5.50538 5.55641 5.58112 5.66258 5.82971 5.99294 6.05683 6.14643 6.18378 6.43680 6.46499 6.52354 6.58596 6.65918 6.75513 6.96279 6.98780 7.11040 7.14806 7.42912 7.74992 7.85856 8.09647 8.70957 8.82480 9.57909 10.27865 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.004885 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.537676 B = 5729.876972 C = 5793.366678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.048 3.952 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.295 4.295 8 H 0.111 0.889 9 N -0.386 5.386 10 C 0.422 3.578 11 O -0.583 6.583 12 C 0.113 3.887 13 O -0.449 6.449 14 C -0.282 4.282 15 C 0.482 3.518 16 O -0.447 6.447 17 C -0.152 4.152 18 C -0.059 4.059 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.139 4.139 22 C -0.065 4.065 23 C 0.251 3.749 24 H 0.154 0.846 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.131 4.131 28 C -0.239 4.239 29 S 0.111 5.889 30 H 0.280 0.720 31 H 0.405 0.595 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -2.084 2.111 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.161 4.161 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.422 4.422 8 H 0.128 0.872 9 N -0.101 5.101 10 C 0.212 3.788 11 O -0.471 6.471 12 C 0.060 3.940 13 O -0.251 6.251 14 C -0.290 4.290 15 C 0.360 3.640 16 O -0.322 6.322 17 C -0.153 4.153 18 C -0.077 4.077 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.157 4.157 22 C -0.084 4.084 23 C 0.144 3.856 24 H 0.170 0.830 25 C -0.234 4.234 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.375 4.375 29 S 0.375 5.625 30 H 0.091 0.909 31 H 0.258 0.742 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.130 -3.151 2.534 9.080 hybrid contribution -0.575 1.667 -0.185 1.773 sum -8.705 -1.485 2.349 9.138 Atomic orbital electron populations 1.69413 1.06397 1.29045 1.43557 1.25487 0.95578 1.00087 0.94951 0.85803 0.79689 0.79855 0.78924 1.19745 1.20236 1.18833 1.19559 0.92924 0.80700 1.49013 0.87167 1.43380 1.15163 1.06070 1.45457 1.18443 0.88591 0.84146 0.87609 1.90677 1.24309 1.82547 1.49604 1.21221 0.94288 0.83754 0.94751 1.84722 1.44656 1.19108 1.76605 1.21830 0.97292 0.96273 1.13567 1.19348 0.86383 0.77738 0.80535 1.90612 1.88112 1.29650 1.23819 1.20505 0.94534 1.01982 0.98299 1.21582 0.98828 0.93886 0.93428 1.21163 0.92291 1.00847 1.00692 1.21359 0.98342 0.96106 0.95517 1.21078 0.97593 1.00238 0.96742 1.21341 0.91415 0.96690 0.98915 1.18793 0.89652 0.88395 0.88725 0.82980 1.24184 0.97641 1.03898 0.97652 1.19872 1.01160 1.01172 0.94278 1.20010 0.97643 1.03000 0.95640 1.25481 1.00499 1.08538 1.02968 1.84278 1.23626 1.53286 1.01282 0.90853 0.74174 0.84616 0.85449 0.85932 0.85753 0.85150 0.84709 0.85276 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.18 10.38 55.53 0.58 -18.61 16 2 C 0.05 1.11 5.24 -17.38 -0.09 1.02 16 3 Si 0.93 18.68 29.56 -169.99 -5.03 13.65 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.29 -7.36 9.59 -15.16 -0.15 -7.50 16 8 H 0.11 2.86 7.85 -52.48 -0.41 2.44 16 9 N -0.39 -9.31 2.61 -111.20 -0.29 -9.60 16 10 C 0.42 10.23 7.89 -12.74 -0.10 10.13 16 11 O -0.58 -15.48 17.60 5.23 0.09 -15.39 16 12 C 0.11 2.40 7.41 -36.79 -0.27 2.13 16 13 O -0.45 -8.35 13.55 -17.75 -0.24 -8.59 16 14 C -0.28 -5.83 4.10 -102.08 -0.42 -6.25 16 15 C 0.48 9.39 6.86 -32.46 -0.22 9.17 16 16 O -0.45 -9.52 17.14 5.15 0.09 -9.43 16 17 C -0.15 -2.51 5.88 -104.91 -0.62 -3.13 16 18 C -0.06 -0.90 9.31 -39.17 -0.36 -1.26 16 19 C -0.13 -1.65 10.03 -39.64 -0.40 -2.05 16 20 C -0.10 -1.05 10.04 -39.47 -0.40 -1.44 16 21 C -0.14 -1.60 10.03 -39.64 -0.40 -1.99 16 22 C -0.07 -0.93 9.60 -39.17 -0.38 -1.31 16 23 C 0.25 5.41 2.48 -69.88 -0.17 5.23 16 24 H 0.15 3.35 5.40 -51.93 -0.28 3.07 16 25 C -0.12 -2.40 4.49 -36.01 -0.16 -2.56 16 26 C -0.13 -2.56 10.02 -41.21 -0.41 -2.98 16 27 C -0.13 -2.23 10.18 -41.21 -0.42 -2.65 16 28 C -0.24 -4.06 11.23 29.04 0.33 -3.73 16 29 S 0.11 2.22 23.14 -107.50 -2.49 -0.27 16 30 H 0.28 5.99 8.30 -40.82 -0.34 5.65 16 31 H 0.40 5.95 8.85 45.56 0.40 6.35 16 32 H 0.14 2.21 6.29 -52.49 -0.33 1.88 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.13 1.79 7.67 -52.49 -0.40 1.39 16 37 H 0.14 2.44 8.06 -52.49 -0.42 2.01 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -29.81 362.37 -9.16 -38.97 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -2.69 Total: 12.98 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -4.64 Total: -9.18 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.29 Total: -28.20 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.06 Total: -33.41 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.49 Total: -0.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.81 -9.16 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005483637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.332 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds