Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99989 * 2 1 4 4 H 1.08997 * 109.47022 * 30.00304 * 3 2 1 5 5 C 1.50704 * 109.46896 * 150.00346 * 3 2 1 6 6 O 1.21312 * 119.99863 * 5.00257 * 5 3 2 7 7 N 1.34776 * 119.99875 * 185.00279 * 5 3 2 8 8 N 1.40101 * 119.99498 * 180.27611 * 7 5 3 9 9 C 1.29831 * 119.99588 * 179.72410 * 8 7 5 10 10 C 1.47363 * 119.99799 * 179.97438 * 9 8 7 11 11 C 1.39806 * 120.08665 * 359.72403 * 10 9 8 12 12 C 1.37715 * 119.90955 * 179.79032 * 11 10 9 13 13 C 1.39080 * 120.08933 * 0.48201 * 12 11 10 14 14 O 1.35651 * 119.91508 * 179.76471 * 13 12 11 15 15 C 1.34810 * 116.99992 * 174.43010 * 14 13 12 16 16 H 1.08001 * 120.00010 * 5.05726 * 15 14 13 17 17 C 1.38643 * 119.99718 * 185.05850 * 15 14 13 18 18 N 1.31558 * 120.00263 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99706 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47052 * 89.99789 * 19 17 15 21 21 H 1.48500 * 109.47049 * 210.00026 * 19 17 15 22 22 H 1.48500 * 109.46920 * 329.99646 * 19 17 15 23 23 C 1.39081 * 120.17014 * 359.74788 * 13 12 11 24 24 C 1.37713 * 120.09301 * 0.02562 * 23 13 12 25 25 C 1.50700 * 109.47225 * 270.00133 * 3 2 1 26 26 C 1.38233 * 120.00115 * 324.73185 * 25 3 2 27 27 C 1.38238 * 119.99996 * 179.81244 * 26 25 3 28 28 C 1.38242 * 119.99850 * 0.39375 * 27 26 25 29 29 C 1.38230 * 119.99961 * 359.85350 * 28 27 26 30 30 C 1.38236 * 119.99714 * 145.00020 * 25 3 2 31 31 H 1.09001 * 109.47087 * 299.99863 * 1 2 3 32 32 H 1.08999 * 109.47502 * 59.99458 * 1 2 3 33 33 H 1.09003 * 109.47437 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00095 * 359.97438 * 7 5 3 35 35 H 1.08000 * 120.00114 * 359.97438 * 9 8 7 36 36 H 1.08006 * 120.04530 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.95738 * 180.25234 * 12 11 10 38 38 H 0.96996 * 119.99951 * 179.97438 * 18 17 15 39 39 H 1.08004 * 119.95062 * 179.97438 * 23 13 12 40 40 H 1.07997 * 120.04521 * 179.97438 * 24 23 13 41 41 H 1.08005 * 120.00093 * 359.97438 * 26 25 3 42 42 H 1.08001 * 120.00117 * 180.22388 * 27 26 25 43 43 H 1.07994 * 119.99759 * 179.83796 * 28 27 26 44 44 H 1.07997 * 120.00335 * 179.97438 * 29 28 27 45 45 H 1.07994 * 120.00428 * 359.97438 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7898 0.2041 1.0913 7 7 4.0255 2.4039 0.9224 8 7 5.2632 2.3644 1.5776 9 6 5.9273 3.4620 1.7771 10 6 7.2289 3.4206 2.4669 11 6 7.7476 2.2011 2.9122 12 6 8.9663 2.1661 3.5525 13 6 9.6763 3.3430 3.7652 14 8 10.8742 3.3050 4.4006 15 6 11.5652 4.4602 4.4736 16 1 11.1247 5.3768 4.1101 17 6 12.8414 4.4715 5.0152 18 7 13.3779 3.3550 5.4583 19 14 13.7992 6.0722 5.1156 20 1 13.5126 6.7401 6.4106 21 1 15.2531 5.7861 5.0174 22 1 13.3934 6.9627 3.9988 23 6 9.1614 4.5587 3.3279 24 6 7.9455 4.6016 2.6827 25 6 2.2145 1.7644 -1.4208 26 6 2.5649 0.8519 -2.3983 27 6 2.7485 1.2723 -3.7023 28 6 2.5897 2.6066 -4.0273 29 6 2.2443 3.5198 -3.0488 30 6 2.0570 3.0988 -1.7455 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.6649 3.2512 0.6175 35 1 5.5258 4.4054 1.4376 36 1 7.1950 1.2872 2.7510 37 1 9.3697 1.2239 3.8933 38 1 14.2709 3.3629 5.8369 39 1 9.7155 5.4705 3.4953 40 1 7.5462 5.5460 2.3438 41 1 2.6926 -0.1899 -2.1437 42 1 3.0187 0.5588 -4.4668 43 1 2.7357 2.9354 -5.0455 44 1 2.1206 4.5623 -3.3025 45 1 1.7871 3.8124 -0.9811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005511871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -4.612578 kcal Electronic energy + Delta-G solvation = -28866.516916 eV Core-core repulsion = 24623.459753 eV Total energy + Delta-G solvation = -4243.057163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60377 -39.16078 -38.94395 -37.80339 -36.99967 -35.75265 -33.07283 -32.45702 -31.66433 -31.29195 -30.32462 -28.86344 -27.93444 -26.15087 -25.56199 -23.15589 -22.97391 -22.25931 -21.90144 -20.64346 -20.23371 -18.23338 -17.91279 -17.62452 -17.28346 -16.85662 -16.43030 -16.17125 -15.21209 -14.97462 -14.92200 -14.86319 -14.75690 -14.60009 -14.27949 -13.79431 -13.76507 -13.61529 -13.51822 -13.22013 -12.85145 -12.82321 -12.48255 -12.42247 -11.94037 -11.79136 -11.68679 -11.39867 -11.32788 -11.21389 -10.94101 -10.78986 -10.52278 -10.49063 -10.10820 -9.87836 -9.43936 -9.32776 -9.23551 -9.12831 -8.75193 -8.28781 -7.12038 -6.58262 -4.14718 0.81800 1.00226 1.35840 2.20675 2.21257 2.43684 2.99718 3.06933 3.12041 3.15024 3.29515 3.56155 3.86715 4.11373 4.36031 4.41820 4.56156 4.59221 4.62635 4.75706 4.87145 4.95643 4.97343 4.99468 5.07280 5.11732 5.18876 5.19390 5.29581 5.48988 5.56493 5.63489 5.75520 5.93321 6.00145 6.07091 6.12933 6.14605 6.34143 6.55360 6.56984 6.62489 6.80579 6.96151 7.02550 7.18850 7.20758 7.32449 7.63019 7.70693 7.86704 8.43907 8.86361 9.54347 10.58601 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.001673 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.297949 B =16733.563281 C =17512.831758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.123 3.877 4 H 0.096 0.904 5 C 0.534 3.466 6 O -0.482 6.482 7 N -0.582 5.582 8 N -0.263 5.263 9 C 0.151 3.849 10 C -0.174 4.174 11 C -0.025 4.025 12 C -0.201 4.201 13 C 0.170 3.830 14 O -0.165 6.165 15 C -0.393 4.393 16 H 0.096 0.904 17 C 0.040 3.960 18 N -0.854 5.854 19 Si 0.944 3.056 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.242 4.242 24 C -0.034 4.034 25 C -0.120 4.120 26 C -0.084 4.084 27 C -0.120 4.120 28 C -0.112 4.112 29 C -0.120 4.120 30 C -0.112 4.112 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.376 0.624 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.273 0.727 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.282 2.869 -15.781 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.060 3.940 4 H 0.114 0.886 5 C 0.318 3.682 6 O -0.352 6.352 7 N -0.325 5.325 8 N -0.069 5.069 9 C -0.056 4.056 10 C -0.178 4.178 11 C -0.045 4.045 12 C -0.220 4.220 13 C 0.113 3.887 14 O -0.066 6.066 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.165 4.165 18 N -0.487 5.487 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.261 4.261 24 C -0.054 4.054 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.138 4.138 28 C -0.130 4.130 29 C -0.138 4.138 30 C -0.130 4.130 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.214 0.786 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.664 0.617 -15.218 28.987 hybrid contribution -0.100 2.495 -0.381 2.525 sum -24.764 3.111 -15.598 29.432 Atomic orbital electron populations 1.22935 0.80106 1.03568 1.00263 1.88056 1.20064 1.23905 1.94626 1.20605 0.93503 0.87498 0.92421 0.88623 1.19837 0.85227 0.83425 0.79686 1.90754 1.67845 1.28997 1.47573 1.46739 1.18316 1.09250 1.58156 1.75167 0.93888 1.25736 1.12117 1.24452 0.93929 0.93309 0.93956 1.17772 0.94475 0.94432 1.11091 1.20917 0.93417 0.96939 0.93203 1.20207 0.96837 0.96727 1.08259 1.19595 0.86750 0.93294 0.89063 1.83947 1.25058 1.35596 1.62002 1.21426 0.97476 0.85475 1.42491 0.88620 1.25373 0.95929 0.99252 0.95989 1.70039 1.16026 1.26402 1.36216 0.85660 0.78671 0.79679 0.79150 1.19731 1.20131 1.19028 1.21037 0.98422 0.98443 1.08235 1.20770 0.93436 0.95961 0.95279 1.20049 1.03029 0.94330 0.94702 1.21083 0.96419 1.00297 0.92383 1.21238 0.99927 0.96159 0.96451 1.21263 0.98705 0.93450 0.99587 1.21113 1.00016 0.99806 0.92862 1.20983 1.00432 0.94542 0.97067 0.93571 0.93620 0.88761 0.78642 0.87611 0.85641 0.86071 0.91701 0.85061 0.86908 0.85053 0.85652 0.85829 0.85652 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.28 16 2 O -0.35 -3.87 9.04 -55.09 -0.50 -4.37 16 3 C 0.12 1.22 2.73 -29.03 -0.08 1.14 16 4 H 0.10 0.65 7.70 -51.93 -0.40 0.25 16 5 C 0.53 7.59 7.28 -10.98 -0.08 7.51 16 6 O -0.48 -9.26 16.84 -14.33 -0.24 -9.50 16 7 N -0.58 -7.51 6.22 31.22 0.19 -7.32 16 8 N -0.26 -4.24 10.15 32.14 0.33 -3.91 16 9 C 0.15 2.16 10.74 -14.69 -0.16 2.01 16 10 C -0.17 -2.97 5.87 -105.01 -0.62 -3.59 16 11 C -0.02 -0.47 9.57 -39.19 -0.37 -0.84 16 12 C -0.20 -4.26 9.97 -39.46 -0.39 -4.65 16 13 C 0.17 3.96 6.65 -38.96 -0.26 3.70 16 14 O -0.17 -4.55 9.75 0.41 0.00 -4.55 16 15 C -0.39 -10.49 9.48 30.88 0.29 -10.20 16 16 H 0.10 2.32 5.19 -52.49 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.85 -24.25 13.67 55.48 0.76 -23.49 16 19 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.24 -4.90 9.15 -39.46 -0.36 -5.26 16 24 C -0.03 -0.57 9.78 -39.19 -0.38 -0.95 16 25 C -0.12 -1.08 4.91 -104.62 -0.51 -1.60 16 26 C -0.08 -0.81 9.35 -39.58 -0.37 -1.18 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 29 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 30 C -0.11 -0.78 9.52 -39.58 -0.38 -1.16 16 31 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.38 3.37 8.49 -182.60 -1.55 1.82 16 35 H 0.11 1.10 8.02 -52.49 -0.42 0.68 16 36 H 0.13 2.34 7.55 -52.48 -0.40 1.94 16 37 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 2.61 5.62 -52.48 -0.29 2.32 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.13 1.38 7.64 -52.48 -0.40 0.98 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -34.81 399.21 -9.00 -43.82 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.67 Total: 5.28 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -3.87 Total: -16.59 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 1.28 Total: -34.71 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.74 Total: -18.42 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.81 -9.00 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005511871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.207 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds