Wall clock time and date at job start Tue Mar 31 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99802 * 2 1 4 4 C 1.50693 * 109.47044 * 269.99525 * 3 2 1 5 5 H 1.08001 * 120.00099 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99791 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00413 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00159 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46846 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47473 * 119.99690 * 8 6 4 11 11 H 1.48504 * 109.47202 * 239.99950 * 8 6 4 12 12 C 1.39555 * 119.99827 * 179.97438 * 2 1 3 13 13 C 1.39073 * 119.91693 * 0.02562 * 12 2 1 14 14 C 1.37760 * 120.08151 * 179.97438 * 13 12 2 15 15 C 1.39770 * 119.91781 * 359.97314 * 14 13 12 16 16 C 1.47406 * 120.08373 * 179.97438 * 15 14 13 17 17 N 1.29848 * 120.00086 * 179.97438 * 16 15 14 18 18 N 1.40095 * 120.00053 * 180.02562 * 17 16 15 19 19 C 1.39505 * 119.99850 * 180.02562 * 18 17 16 20 20 C 1.39008 * 120.07879 * 180.02562 * 19 18 17 21 21 C 1.38076 * 119.91117 * 180.02562 * 20 19 18 22 22 C 1.38300 * 120.08719 * 359.97438 * 21 20 19 23 23 N 1.48486 * 119.92138 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99579 * 0.02562 * 23 22 21 25 25 O 1.21799 * 120.00218 * 179.72825 * 23 22 21 26 26 C 1.38316 * 120.16580 * 0.27779 * 22 21 20 27 27 C 1.38075 * 120.07698 * 359.45186 * 26 22 21 28 28 C 1.39767 * 119.83378 * 0.25723 * 15 14 13 29 29 C 1.37769 * 119.91510 * 359.51143 * 28 15 14 30 30 H 1.08999 * 109.47188 * 269.99980 * 1 2 3 31 31 H 1.08999 * 109.46693 * 30.00508 * 1 2 3 32 32 H 1.09002 * 109.46864 * 149.99880 * 1 2 3 33 33 H 1.08996 * 109.47218 * 30.00194 * 3 2 1 34 34 H 1.09003 * 109.46738 * 149.99829 * 3 2 1 35 35 H 0.97002 * 120.00638 * 179.97438 * 7 6 4 36 36 H 1.08002 * 119.95896 * 359.97388 * 13 12 2 37 37 H 1.08005 * 120.04391 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.99688 * 0.02562 * 16 15 14 39 39 H 0.96995 * 120.00418 * 0.02562 * 18 17 16 40 40 H 1.07989 * 120.04334 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.95559 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.95541 * 179.72733 * 26 22 21 43 43 H 1.08009 * 120.03797 * 180.27499 * 27 26 22 44 44 H 1.08001 * 120.04286 * 179.72426 * 28 15 14 45 45 H 1.07989 * 119.95754 * 180.23163 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4378 3.4170 -3.4338 9 1 2.8600 2.4169 -4.3673 10 1 2.8008 4.7380 -3.6666 11 1 4.9004 3.5246 -3.6678 12 6 2.1628 -1.2086 0.0005 13 6 1.4657 -2.4120 0.0005 14 6 2.1510 -3.6070 0.0005 15 6 3.5487 -3.6091 0.0000 16 6 4.2857 -4.8856 0.0005 17 7 5.5842 -4.8857 -0.0005 18 7 6.2847 -6.0989 -0.0005 19 6 7.6797 -6.0989 -0.0011 20 6 8.3764 -7.3018 -0.0016 21 6 9.7572 -7.2977 -0.0016 22 6 10.4470 -6.0990 -0.0017 23 7 11.9318 -6.0990 -0.0023 24 8 12.5408 -7.1538 -0.0032 25 8 12.5408 -5.0442 -0.0073 26 6 9.7572 -4.9002 0.0041 27 6 8.3764 -4.8962 -0.0014 28 6 4.2458 -2.3977 0.0048 29 6 3.5535 -1.2065 0.0000 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1384 0.5139 35 1 4.0317 4.4431 -0.8503 36 1 0.3856 -2.4096 0.0005 37 1 1.6090 -4.5412 0.0001 38 1 3.7457 -5.8209 0.0010 39 1 5.7997 -6.9390 -0.0001 40 1 7.8385 -8.2382 -0.0012 41 1 10.2992 -8.2319 -0.0016 42 1 10.2993 -3.9662 0.0086 43 1 7.8384 -3.9597 -0.0014 44 1 5.3258 -2.3953 0.0089 45 1 4.0914 -0.2702 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005586517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:50 Heat of formation + Delta-G solvation = 101.250484 kcal Electronic energy + Delta-G solvation = -28533.341760 eV Core-core repulsion = 24327.167915 eV Total energy + Delta-G solvation = -4206.173845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14619 -39.95343 -39.21666 -37.36216 -36.57010 -35.85802 -33.57066 -32.75287 -31.66650 -30.77750 -30.49887 -28.76968 -27.95395 -26.02774 -25.27118 -23.91206 -23.25440 -22.22478 -22.09764 -21.13541 -19.78981 -19.42592 -18.69012 -18.10000 -17.52328 -17.34547 -16.81035 -16.59993 -15.37741 -15.17528 -14.97133 -14.86270 -14.50898 -14.34407 -14.16846 -13.96255 -13.92458 -13.52857 -13.18370 -13.05931 -12.93705 -12.29905 -12.17474 -11.85313 -11.68681 -11.58925 -11.48539 -11.40029 -11.23382 -11.18649 -11.08066 -10.84619 -10.75375 -10.55116 -10.32595 -10.02556 -9.88420 -9.71649 -9.12460 -8.63136 -8.57985 -8.11447 -6.63661 -6.16086 -4.30147 -0.20774 0.72712 1.01537 1.39306 1.44394 1.88472 2.17665 2.64104 3.15027 3.18564 3.27595 3.30984 3.89180 4.10205 4.26586 4.29361 4.35214 4.43079 4.52696 4.60636 4.81129 5.03800 5.10442 5.21267 5.27812 5.36480 5.42449 5.50931 5.58185 5.61131 5.78666 5.84991 5.86955 5.98718 6.03295 6.15390 6.19380 6.32331 6.36200 6.62129 6.71827 6.75512 6.87920 7.01019 7.16718 7.28582 7.62406 7.67913 7.85995 7.97204 8.03201 8.20228 8.77952 9.37534 10.83971 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.001938 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.801387 B =14446.298369 C =16716.110663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.263 3.737 13 C -0.228 4.228 14 C -0.034 4.034 15 C -0.163 4.163 16 C 0.156 3.844 17 N -0.280 5.280 18 N -0.576 5.576 19 C 0.283 3.717 20 C -0.196 4.196 21 C -0.008 4.008 22 C -0.105 4.105 23 N 0.040 4.960 24 O -0.181 6.181 25 O -0.174 6.174 26 C -0.013 4.013 27 C -0.164 4.164 28 C -0.024 4.024 29 C -0.196 4.196 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.388 0.612 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.123 0.877 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -21.058 3.117 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.305 5.305 3 C 0.124 3.876 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.152 3.848 13 C -0.251 4.251 14 C -0.055 4.055 15 C -0.169 4.169 16 C -0.051 4.051 17 N -0.086 5.086 18 N -0.291 5.291 19 C 0.176 3.824 20 C -0.220 4.220 21 C -0.028 4.028 22 C -0.191 4.191 23 N 0.554 4.446 24 O -0.393 6.393 25 O -0.388 6.388 26 C -0.033 4.033 27 C -0.186 4.186 28 C -0.045 4.045 29 C -0.219 4.219 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.227 0.773 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.141 0.859 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.942 -20.060 3.169 20.331 hybrid contribution -0.360 -0.594 -1.024 1.237 sum 0.582 -20.655 2.145 20.774 Atomic orbital electron populations 1.21584 0.81043 1.02372 1.00154 1.47319 1.04861 1.04909 1.73392 1.19414 0.92250 0.78498 0.97395 1.21545 1.36849 1.06664 0.92365 0.92103 1.24960 0.95253 0.96216 0.97541 1.69924 1.37990 1.14362 1.30801 0.86456 0.78193 0.78510 0.84413 1.19720 1.20873 1.20707 1.18198 0.91649 0.86115 0.88844 1.20496 0.99391 0.91047 1.14176 1.20719 0.92226 0.97133 0.95456 1.17806 0.92248 0.89967 1.16843 1.24373 0.89991 0.97796 0.92935 1.74787 1.09815 1.05438 1.18526 1.45628 1.02996 1.04805 1.75683 1.17856 0.81660 0.94159 0.88728 1.20506 0.92915 0.96959 1.11651 1.20624 0.93461 0.97029 0.91714 1.20943 0.78689 0.96950 1.22483 1.43698 1.03790 1.00194 0.96888 1.94499 1.69382 1.20851 1.54525 1.94531 1.69292 1.20749 1.54184 1.20875 0.93963 0.97119 0.91327 1.20832 0.92177 0.98650 1.06962 1.21011 0.99413 0.90773 0.93309 1.20908 0.92524 0.99136 1.09308 0.94065 0.91035 0.92335 0.94836 0.94292 0.92518 0.86151 0.86599 0.87288 0.77252 0.83914 0.83074 0.82909 0.82485 0.85891 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.18 59.85 0.61 2.01 16 2 N -0.60 -11.48 2.99 -180.94 -0.54 -12.02 16 3 C 0.24 5.64 4.90 -5.20 -0.03 5.61 16 4 C -0.54 -13.72 9.39 -34.44 -0.32 -14.05 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 7 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.26 4.63 6.56 -83.72 -0.55 4.08 16 13 C -0.23 -3.25 9.19 -39.45 -0.36 -3.61 16 14 C -0.03 -0.41 9.78 -39.18 -0.38 -0.79 16 15 C -0.16 -2.09 5.87 -105.02 -0.62 -2.71 16 16 C 0.16 1.59 10.75 -14.66 -0.16 1.44 16 17 N -0.28 -3.09 9.44 32.16 0.30 -2.78 16 18 N -0.58 -4.95 6.45 32.41 0.21 -4.74 16 19 C 0.28 2.54 6.72 -83.80 -0.56 1.97 16 20 C -0.20 -1.40 9.90 -39.36 -0.39 -1.78 16 21 C -0.01 -0.07 9.55 -39.62 -0.38 -0.45 16 22 C -0.10 -1.13 6.87 -79.63 -0.55 -1.68 16 23 N 0.04 0.52 4.47 34.10 0.15 0.67 16 24 O -0.18 -2.45 18.46 -29.46 -0.54 -2.99 16 25 O -0.17 -2.48 18.46 -29.46 -0.54 -3.02 16 26 C -0.01 -0.13 9.55 -39.61 -0.38 -0.51 16 27 C -0.16 -1.64 9.51 -39.36 -0.37 -2.02 16 28 C -0.02 -0.36 9.57 -39.18 -0.37 -0.74 16 29 C -0.20 -3.51 9.19 -39.44 -0.36 -3.87 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 32 H 0.06 0.76 6.18 -51.93 -0.32 0.44 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.12 1.49 6.12 -52.49 -0.32 1.17 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.11 0.75 8.02 -52.49 -0.42 0.33 16 39 H 0.39 2.22 8.66 -182.61 -1.58 0.64 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.15 1.02 7.61 -52.48 -0.40 0.62 16 42 H 0.15 1.42 7.61 -52.49 -0.40 1.02 16 43 H 0.16 1.66 7.36 -52.48 -0.39 1.28 16 44 H 0.12 1.77 7.55 -52.49 -0.40 1.37 16 45 H 0.14 2.77 6.12 -52.49 -0.32 2.45 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -29.78 395.27 -11.08 -40.86 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.52 Total: 1.88 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -5.27 Total: -15.52 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.86 Total: -42.64 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -1.09 Total: -6.01 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.78 -11.08 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005586517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.114 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds