Wall clock time and date at job start Tue Mar 31 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86800 * 119.99831 * 2 1 4 4 H 1.48496 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47126 * 299.99997 * 3 2 1 6 6 H 1.48501 * 109.47227 * 59.99820 * 3 2 1 7 7 C 1.38891 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00032 * 163.61898 * 7 2 1 9 9 N 1.37140 * 119.99574 * 343.62610 * 7 2 1 10 10 C 1.34777 * 119.99799 * 164.74090 * 9 7 2 11 11 O 1.21283 * 120.00377 * 174.95018 * 10 9 7 12 12 C 1.50702 * 120.00136 * 354.94986 * 10 9 7 13 13 S 1.80995 * 109.47285 * 179.97438 * 12 10 9 14 14 C 1.76203 * 100.00004 * 180.02562 * 13 12 10 15 15 N 1.30939 * 124.97630 * 180.02562 * 14 13 12 16 16 C 1.36101 * 108.69986 * 179.97438 * 15 14 13 17 17 C 1.39569 * 133.65779 * 180.02562 * 16 15 14 18 18 C 1.37768 * 119.73393 * 179.97438 * 17 16 15 19 19 C 1.38638 * 120.39032 * 0.02562 * 18 17 16 20 20 C 1.38040 * 120.46036 * 359.97438 * 19 18 17 21 21 C 1.38526 * 119.90464 * 0.02562 * 20 19 18 22 22 O 1.34508 * 124.97111 * 359.69577 * 14 13 12 23 23 C 1.39784 * 120.00536 * 344.73812 * 9 7 2 24 24 C 1.38968 * 120.07711 * 281.21173 * 23 9 7 25 25 C 1.38083 * 119.92154 * 179.78740 * 24 23 9 26 26 C 1.38305 * 120.07586 * 0.46326 * 25 24 23 27 27 C 1.38309 * 120.15753 * 359.79230 * 26 25 24 28 28 C 1.38076 * 120.08016 * 359.97417 * 27 26 25 29 29 H 0.97000 * 120.00599 * 5.02282 * 1 2 3 30 30 H 1.09000 * 109.47246 * 300.00366 * 12 10 9 31 31 H 1.09002 * 109.47131 * 59.99810 * 12 10 9 32 32 H 1.08003 * 120.13210 * 359.97285 * 17 16 15 33 33 H 1.07996 * 119.80521 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.76990 * 180.02562 * 19 18 17 35 35 H 1.08007 * 120.04938 * 180.02562 * 20 19 18 36 36 H 1.08006 * 120.03569 * 359.97438 * 24 23 9 37 37 H 1.08001 * 119.95835 * 180.25329 * 25 24 23 38 38 H 1.07997 * 119.91999 * 179.76046 * 26 25 24 39 39 H 1.08001 * 119.96052 * 179.97438 * 27 26 25 40 40 H 1.07998 * 120.04322 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2028 0.0005 8 1 3.0559 -1.2219 -0.2632 9 7 1.3647 -2.3662 0.3359 10 6 1.9287 -3.5559 0.0475 11 8 1.4049 -4.5827 0.4245 12 6 3.2103 -3.6102 -0.7435 13 16 3.7105 -5.3357 -0.9640 14 6 5.1912 -5.1088 -1.8919 15 7 5.9637 -6.0751 -2.3207 16 6 7.0108 -5.5290 -2.9973 17 6 8.1179 -6.0663 -3.6558 18 6 9.0263 -5.2265 -4.2620 19 6 8.8470 -3.8523 -4.2209 20 6 7.7564 -3.3080 -3.5729 21 6 6.8333 -4.1379 -2.9581 22 8 5.6899 -3.9178 -2.2688 23 6 0.1234 -2.3183 0.9768 24 6 0.0531 -2.0583 2.3402 25 6 -1.1750 -2.0074 2.9692 26 6 -2.3338 -2.2243 2.2459 27 6 -2.2672 -2.4886 0.8899 28 6 -1.0429 -2.5362 0.2534 29 1 -0.4851 0.8368 -0.0735 30 1 3.0552 -3.1490 -1.7188 31 1 3.9915 -3.0716 -0.2070 32 1 8.2619 -7.1361 -3.6900 33 1 9.8836 -5.6409 -4.7715 34 1 9.5651 -3.2033 -4.6999 35 1 7.6230 -2.2365 -3.5454 36 1 0.9579 -1.8933 2.9064 37 1 -1.2306 -1.8013 4.0279 38 1 -3.2928 -2.1877 2.7412 39 1 -3.1740 -2.6579 0.3283 40 1 -0.9916 -2.7431 -0.8053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005628577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:35 Heat of formation + Delta-G solvation = 54.980286 kcal Electronic energy + Delta-G solvation = -27249.207126 eV Core-core repulsion = 23315.653879 eV Total energy + Delta-G solvation = -3933.553246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.09493 -39.55733 -38.06748 -37.41741 -34.98582 -34.65003 -31.90447 -30.84841 -30.35726 -29.98569 -29.79541 -28.12734 -25.16196 -24.31183 -23.04283 -22.07172 -21.76896 -21.61917 -19.55608 -18.51577 -18.13054 -17.63195 -16.84052 -16.81178 -16.42486 -15.67272 -15.20543 -15.03271 -14.78284 -14.50680 -14.29854 -13.98969 -13.90060 -13.55087 -13.28985 -12.77739 -12.63725 -12.53807 -12.41415 -12.12637 -11.80711 -11.65858 -11.65000 -11.63128 -11.30259 -11.14935 -10.67092 -10.60884 -10.48960 -10.41118 -10.40057 -9.61987 -9.27400 -9.01381 -8.86446 -8.34079 -7.96757 -7.71565 -7.50522 -6.44355 -4.24287 0.52864 0.92368 1.09773 1.81671 2.27342 2.35330 2.41423 2.93156 3.06027 3.07740 3.10207 3.41194 3.52866 3.84716 4.30064 4.34153 4.53372 4.71922 4.82180 4.89058 4.98661 5.07012 5.23296 5.42039 5.52324 5.61007 5.71926 5.79168 5.81547 5.88627 5.93032 6.03693 6.14327 6.16305 6.31208 6.46762 6.46905 6.67628 6.94145 7.11705 7.22200 7.36085 7.43837 7.44645 7.61948 7.83183 8.18541 8.74226 9.06002 9.47960 10.39556 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.002828 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.506276 B = 9899.802539 C =11509.607013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.050 3.950 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.395 5.395 10 C 0.474 3.526 11 O -0.583 6.583 12 C -0.141 4.141 13 S 0.144 5.856 14 C 0.215 3.785 15 N -0.472 5.472 16 C 0.037 3.963 17 C -0.068 4.068 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.088 4.088 21 C 0.004 3.996 22 O -0.209 6.209 23 C 0.233 3.767 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.142 4.142 27 C -0.121 4.121 28 C -0.065 4.065 29 H 0.275 0.725 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.142 -2.907 -4.962 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.159 4.159 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.488 4.488 8 H 0.123 0.877 9 N -0.111 5.111 10 C 0.262 3.738 11 O -0.469 6.469 12 C -0.292 4.292 13 S 0.375 5.625 14 C -0.103 4.103 15 N -0.206 5.206 16 C -0.077 4.077 17 C -0.088 4.088 18 C -0.138 4.138 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.050 4.050 22 O -0.102 6.102 23 C 0.142 3.858 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.160 4.160 27 C -0.140 4.140 28 C -0.084 4.084 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.007 -4.842 -4.204 11.057 hybrid contribution 1.094 3.201 -0.662 3.446 sum 10.100 -1.642 -4.866 11.331 Atomic orbital electron populations 1.69945 1.05840 1.28267 1.43188 1.25296 0.95476 0.99880 0.95292 0.85950 0.79764 0.81293 0.78266 1.19108 1.20417 1.20203 1.19683 0.95455 0.83163 1.50521 0.87726 1.41162 1.16098 1.05045 1.48760 1.18929 0.86363 0.83835 0.84710 1.90643 1.65515 1.32924 1.57800 1.23846 1.02281 0.96403 1.06713 1.86962 1.09198 1.07701 1.58644 1.29382 1.01832 0.79667 0.99379 1.71076 1.04089 1.29581 1.15901 1.19999 0.96367 0.90340 1.01014 1.20301 0.91386 1.00599 0.96546 1.21013 0.99382 0.93243 1.00191 1.20973 0.96798 0.95384 0.99094 1.19919 0.92643 0.99447 0.98661 1.20395 0.88787 0.96108 0.99663 1.84787 1.33334 1.33227 1.58897 1.17062 0.84748 0.93945 0.90018 1.20966 0.97237 1.01706 0.94024 1.20673 0.92479 1.02285 0.98681 1.20772 0.97246 1.03491 0.94519 1.20695 0.96652 1.02043 0.94568 1.20790 0.91572 0.97583 0.98480 0.91391 0.86140 0.86569 0.84724 0.84695 0.84397 0.84712 0.87383 0.87459 0.87623 0.87417 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.42 10.34 55.49 0.57 -19.84 16 2 C 0.05 1.17 5.24 -17.48 -0.09 1.07 16 3 Si 0.92 18.32 29.59 -169.99 -5.03 13.29 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.36 -8.44 9.19 -14.94 -0.14 -8.58 16 8 H 0.11 2.27 6.46 -52.49 -0.34 1.93 16 9 N -0.40 -9.34 2.66 -58.97 -0.16 -9.49 16 10 C 0.47 10.63 7.60 -10.98 -0.08 10.55 16 11 O -0.58 -14.34 15.84 5.55 0.09 -14.25 16 12 C -0.14 -2.59 4.26 36.01 0.15 -2.44 16 13 S 0.14 2.50 21.45 -107.50 -2.31 0.19 16 14 C 0.21 3.70 8.28 52.38 0.43 4.13 16 15 N -0.47 -8.24 11.39 -11.45 -0.13 -8.37 16 16 C 0.04 0.56 7.23 -84.70 -0.61 -0.05 16 17 C -0.07 -0.79 10.10 -39.26 -0.40 -1.19 16 18 C -0.12 -1.06 10.02 -39.61 -0.40 -1.45 16 19 C -0.10 -0.92 10.03 -39.51 -0.40 -1.32 16 20 C -0.09 -1.01 10.06 -39.55 -0.40 -1.40 16 21 C 0.00 0.06 7.42 -38.70 -0.29 -0.23 16 22 O -0.21 -3.51 10.17 2.30 0.02 -3.48 16 23 C 0.23 5.50 2.29 -83.69 -0.19 5.31 16 24 C -0.12 -2.65 9.95 -39.37 -0.39 -3.04 16 25 C -0.12 -2.37 10.04 -39.61 -0.40 -2.77 16 26 C -0.14 -2.63 10.04 -39.53 -0.40 -3.03 16 27 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 28 C -0.06 -1.47 8.66 -39.37 -0.34 -1.81 16 29 H 0.27 6.44 8.32 -40.82 -0.34 6.10 16 30 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 31 H 0.12 1.99 7.53 -51.91 -0.39 1.60 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.11 2.33 8.06 -52.48 -0.42 1.91 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -29.15 366.14 -9.84 -38.99 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.09 Total: 6.48 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -4.33 Total: -9.03 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.29 Total: -37.70 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.11 Total: -17.74 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.31 Total: 0.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.15 -9.84 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005628577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.967 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds