Wall clock time and date at job start Tue Mar 31 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35836 * 116.99972 * 2 1 4 4 C 1.38946 * 119.91422 * 270.02097 * 3 2 1 5 5 Cl 1.73602 * 119.91238 * 359.97438 * 4 3 2 6 6 C 1.37849 * 120.17815 * 179.69698 * 4 3 2 7 7 C 1.40073 * 119.98637 * 0.53456 * 6 4 3 8 8 C 1.46867 * 120.08765 * 179.73983 * 7 6 4 9 9 C 1.35701 * 119.99829 * 41.26686 * 8 7 6 10 10 N 1.40056 * 127.39720 * 188.16499 * 9 8 7 11 11 C 1.34465 * 107.77135 * 179.97438 * 10 9 8 12 12 S 1.71204 * 124.47539 * 180.02562 * 11 10 9 13 13 N 1.34178 * 111.04463 * 359.97438 * 11 10 9 14 14 C 1.34837 * 109.82161 * 0.23123 * 13 11 10 15 15 O 1.21709 * 126.92582 * 179.74701 * 14 13 11 16 16 C 1.39929 * 119.82493 * 359.47125 * 7 6 4 17 17 C 1.38317 * 119.82707 * 0.26635 * 16 7 6 18 18 O 1.35807 * 119.99736 * 180.02562 * 17 16 7 19 19 C 1.34812 * 117.00177 * 5.62254 * 18 17 16 20 20 H 1.08003 * 119.99835 * 354.91942 * 19 18 17 21 21 C 1.38633 * 120.00170 * 174.92414 * 19 18 17 22 22 N 1.31575 * 120.00097 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47370 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47344 * 120.00157 * 23 21 19 26 26 H 1.48502 * 109.47208 * 240.00147 * 23 21 19 27 27 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47392 * 300.00338 * 1 2 3 29 29 H 1.09008 * 109.47141 * 60.00023 * 1 2 3 30 30 H 1.07996 * 120.00314 * 180.30063 * 6 4 3 31 31 H 1.07996 * 119.99882 * 221.27364 * 8 7 6 32 32 H 0.97002 * 126.11309 * 359.97438 * 10 9 8 33 33 H 0.97000 * 125.09070 * 179.97438 * 13 11 10 34 34 H 1.07997 * 120.08851 * 180.25492 * 16 7 6 35 35 H 0.96998 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 2.3598 1.8279 -1.2043 5 17 1.9638 1.0504 -2.7051 6 6 2.9800 3.0590 -1.2107 7 6 3.3051 3.6854 -0.0007 8 6 3.9710 4.9944 -0.0049 9 6 3.5829 5.9502 -0.8865 10 7 4.2034 7.1811 -1.1345 11 6 3.4909 7.8165 -2.0814 12 16 3.8740 9.3630 -2.7081 13 7 2.4405 7.0780 -2.4709 14 6 2.4179 5.9175 -1.7846 15 8 1.5996 5.0226 -1.8881 16 6 2.9887 3.0632 1.2120 17 6 2.3615 1.8304 1.2097 18 8 2.0524 1.2237 2.3847 19 6 2.2769 1.9255 3.5136 20 1 2.7607 2.8898 3.4627 21 6 1.8871 1.4094 4.7398 22 7 1.2983 0.2344 4.8019 23 14 2.1989 2.3816 6.3041 24 1 2.8717 3.6615 5.9657 25 1 0.9059 2.6644 6.9773 26 1 3.0678 1.5916 7.2130 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 3.2185 3.5387 -2.1484 31 1 4.7697 5.1962 0.6935 32 1 5.0040 7.5154 -0.7007 33 1 1.7922 7.3411 -3.1427 34 1 3.2337 3.5442 2.1474 35 1 1.0259 -0.1268 5.6599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005720085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:15 Heat of formation + Delta-G solvation = -7.578807 kcal Electronic energy + Delta-G solvation = -26077.757060 eV Core-core repulsion = 22003.225103 eV Total energy + Delta-G solvation = -4074.531956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 354.027 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.95634 -39.86072 -38.32114 -37.51776 -37.00725 -36.09422 -34.82743 -32.71700 -32.21863 -29.64348 -28.91142 -26.78582 -25.95421 -25.19799 -24.14487 -22.33186 -22.15153 -20.60078 -19.47289 -18.22937 -17.91043 -17.05561 -16.98566 -16.80893 -16.39235 -16.12658 -15.73549 -15.15975 -15.08393 -14.66378 -14.36262 -13.97648 -13.72094 -13.65009 -13.49504 -13.09565 -12.49112 -12.27787 -12.01288 -11.96038 -11.84159 -11.50678 -11.31205 -11.22129 -11.02714 -10.75645 -10.64547 -10.56093 -9.90542 -9.59665 -9.37811 -9.07408 -8.49868 -8.19843 -7.97029 -7.52211 -6.70959 -4.30757 -0.44893 1.02651 1.19818 1.60034 1.88517 2.30230 2.35218 2.39171 2.45693 2.95914 2.97094 3.03217 3.45471 3.72932 3.79166 4.37817 4.52939 4.58178 4.76493 4.85350 5.13690 5.16151 5.45255 5.53612 5.68026 5.78812 5.84264 5.94577 5.97978 6.03060 6.18016 6.34865 6.47071 6.54241 6.66091 6.91336 7.03807 7.12089 7.67513 7.98950 8.71972 9.35197 10.44895 Molecular weight = 354.03amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.003582 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.934162 B = 7814.556678 C =10289.824662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.314 6.314 3 C 0.053 3.947 4 C -0.009 4.009 5 Cl -0.070 7.070 6 C -0.128 4.128 7 C -0.053 4.053 8 C 0.056 3.944 9 C -0.048 4.048 10 N -0.591 5.591 11 C 0.543 3.457 12 S -0.558 6.558 13 N -0.633 5.633 14 C 0.541 3.459 15 O -0.423 6.423 16 C -0.182 4.182 17 C 0.135 3.865 18 O -0.149 6.149 19 C -0.400 4.400 20 H 0.095 0.905 21 C 0.045 3.955 22 N -0.846 5.846 23 Si 0.943 3.057 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.451 0.549 33 H 0.447 0.553 34 H 0.144 0.856 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 7.828 -8.480 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.006 3.994 4 C -0.037 4.037 5 Cl -0.041 7.041 6 C -0.148 4.148 7 C -0.055 4.055 8 C 0.030 3.970 9 C -0.149 4.149 10 N -0.218 5.218 11 C 0.189 3.811 12 S -0.424 6.424 13 N -0.283 5.283 14 C 0.326 3.674 15 O -0.291 6.291 16 C -0.202 4.202 17 C 0.078 3.922 18 O -0.051 6.051 19 C -0.475 4.475 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.479 5.479 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.297 0.703 33 H 0.293 0.707 34 H 0.162 0.838 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.044 7.532 -8.743 11.935 hybrid contribution -0.146 0.236 0.908 0.949 sum 2.899 7.769 -7.836 11.408 Atomic orbital electron populations 1.22917 0.79794 1.02586 1.00276 1.86052 1.19422 1.23592 1.93945 1.17652 1.03732 0.89368 0.88610 1.20552 1.03340 0.94146 0.85615 1.98322 1.92908 1.81122 1.31796 1.20394 1.03605 0.94041 0.96802 1.18085 1.01570 0.92539 0.93274 1.21947 0.94730 0.89410 0.90910 1.20392 0.98562 0.89881 1.06039 1.43090 1.27404 1.15726 1.35578 1.22704 0.82177 0.92785 0.83421 1.93714 1.80781 1.00820 1.67097 1.44208 1.26544 1.18263 1.39320 1.18656 0.86145 0.81849 0.80707 1.91108 1.39871 1.35267 1.62823 1.21206 1.04931 0.96635 0.97440 1.19237 0.94909 0.90591 0.87413 1.84087 1.71602 1.39128 1.10245 1.21423 1.40936 1.03270 0.81905 0.88778 1.25347 0.95691 0.96446 0.98713 1.70058 1.35152 1.15917 1.26742 0.85619 0.78660 0.79041 0.79957 1.18959 1.19909 1.19852 0.89438 0.93117 0.94383 0.86099 0.82663 0.70335 0.70746 0.83834 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.13 101.05 1.12 1.81 16 2 O -0.31 -6.54 9.63 -33.87 -0.33 -6.86 16 3 C 0.05 1.08 5.74 -38.83 -0.22 0.85 16 4 C -0.01 -0.16 6.32 -39.46 -0.25 -0.41 16 5 Cl -0.07 -1.12 28.48 -51.86 -1.48 -2.60 16 6 C -0.13 -2.00 6.82 -39.04 -0.27 -2.26 16 7 C -0.05 -0.77 5.33 -105.09 -0.56 -1.33 16 8 C 0.06 0.55 9.86 -37.00 -0.36 0.18 16 9 C -0.05 -0.46 6.85 -81.40 -0.56 -1.02 16 10 N -0.59 -4.60 6.21 -10.15 -0.06 -4.66 16 11 C 0.54 5.37 8.09 -87.73 -0.71 4.66 16 12 S -0.56 -7.34 31.19 -107.50 -3.35 -10.69 16 13 N -0.63 -5.83 5.85 -14.16 -0.08 -5.92 16 14 C 0.54 6.10 7.74 -12.63 -0.10 6.00 16 15 O -0.42 -6.07 14.37 5.18 0.07 -6.00 16 16 C -0.18 -3.22 8.91 -38.92 -0.35 -3.57 16 17 C 0.13 2.90 6.65 -39.06 -0.26 2.64 16 18 O -0.15 -3.83 9.53 -14.72 -0.14 -3.97 16 19 C -0.40 -9.89 9.48 30.88 0.29 -9.60 16 20 H 0.09 2.07 5.20 -52.48 -0.27 1.79 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.85 -22.81 13.67 55.48 0.76 -22.05 16 23 Si 0.94 18.42 29.55 -169.99 -5.02 13.40 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.12 1.71 6.60 -52.49 -0.35 1.37 16 31 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.45 2.30 8.96 -40.82 -0.37 1.93 16 33 H 0.45 3.26 8.96 -40.82 -0.37 2.90 16 34 H 0.14 2.40 5.63 -52.49 -0.30 2.10 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -31.53 344.39 -9.23 -40.76 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -2.47 Total: 4.42 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.31 Total: -1.04 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.61 Total: -32.63 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.39 Total: -16.83 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -3.35 Total: -10.69 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.48 Total: -2.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.53 -9.23 -40.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005720085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.183 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds