Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35798 * 117.00526 * 2 1 4 4 C 1.38864 * 119.92632 * 0.25725 * 3 2 1 5 5 C 1.37781 * 120.14747 * 180.30021 * 4 3 2 6 6 C 1.39747 * 120.00109 * 359.71964 * 5 4 3 7 7 C 1.47693 * 120.06803 * 179.97438 * 6 5 4 8 8 O 1.21799 * 119.99881 * 180.02562 * 7 6 5 9 9 C 1.41808 * 120.00502 * 0.02562 * 7 6 5 10 10 C 1.35261 * 120.00602 * 180.02562 * 9 7 6 11 11 C 1.46853 * 120.00422 * 179.97438 * 10 9 7 12 12 C 1.40088 * 120.10064 * 359.72252 * 11 10 9 13 13 C 1.37091 * 119.88868 * 179.78962 * 12 11 10 14 14 C 1.39211 * 120.10791 * 0.48477 * 13 12 11 15 15 O 1.35552 * 119.89555 * 179.76738 * 14 13 12 16 16 C 1.34762 * 116.99661 * 174.42481 * 15 14 13 17 17 H 1.07993 * 120.00334 * 5.05495 * 16 15 14 18 18 C 1.38750 * 119.99542 * 185.05221 * 16 15 14 19 19 N 1.31486 * 120.00004 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99899 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46879 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46772 * 120.00294 * 20 18 16 23 23 H 1.48491 * 109.47136 * 240.00270 * 20 18 16 24 24 C 1.39209 * 120.21037 * 359.74518 * 14 13 12 25 25 C 1.37094 * 120.10755 * 0.02562 * 24 14 13 26 26 C 1.39751 * 119.85620 * 0.02562 * 6 5 4 27 27 C 1.38124 * 119.85533 * 359.97438 * 26 6 5 28 28 O 1.35991 * 120.00156 * 180.02562 * 27 26 6 29 29 C 1.42899 * 117.00256 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46765 * 300.00377 * 1 2 3 32 32 H 1.09001 * 109.47238 * 59.99815 * 1 2 3 33 33 H 1.07996 * 119.92679 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.99626 * 179.70322 * 5 4 3 35 35 H 1.08007 * 120.00037 * 0.02562 * 9 7 6 36 36 H 1.08003 * 119.99854 * 359.97438 * 10 9 7 37 37 H 1.07998 * 120.05886 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.94752 * 180.23081 * 13 12 11 39 39 H 0.97000 * 119.99972 * 180.02562 * 19 18 16 40 40 H 1.07997 * 119.94505 * 179.97438 * 24 14 13 41 41 H 1.07996 * 120.05477 * 180.02562 * 25 24 14 42 42 H 1.07999 * 120.06878 * 180.02562 * 26 6 5 43 43 H 1.09004 * 109.47160 * 180.02562 * 29 28 27 44 44 H 1.08994 * 109.46859 * 59.99483 * 29 28 27 45 45 H 1.08999 * 109.46950 * 299.99764 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2879 2.3736 0.0054 5 6 1.9088 3.6036 -0.0008 6 6 3.3040 3.6820 -0.0067 7 6 3.9711 4.9997 -0.0139 8 8 5.1872 5.0666 -0.0195 9 6 3.1957 6.1871 -0.0144 10 6 3.8066 7.3939 -0.0215 11 6 3.0036 8.6234 -0.0226 12 6 1.6047 8.5490 -0.0221 13 6 0.8594 9.6995 -0.0187 14 6 1.4904 10.9404 -0.0260 15 8 0.7492 12.0753 -0.0274 16 6 1.4157 13.2414 0.0821 17 1 2.4956 13.2481 0.0836 18 6 0.7144 14.4335 0.1929 19 7 -0.6004 14.4253 0.1916 20 14 1.6383 16.0499 0.3455 21 1 3.0999 15.7887 0.3222 22 1 1.2760 16.9361 -0.7898 23 1 1.2733 16.7099 1.6246 24 6 2.8802 11.0194 -0.0314 25 6 3.6342 9.8744 -0.0301 26 6 4.0667 2.5110 -0.0067 27 6 3.4381 1.2811 -0.0005 28 8 4.1773 0.1396 0.0000 29 6 5.5987 0.2871 -0.0056 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.2096 2.3144 0.0100 34 1 1.3171 4.5070 -0.0014 35 1 2.1173 6.1278 -0.0090 36 1 4.8850 7.4532 -0.0265 37 1 1.1142 7.5868 -0.0213 38 1 -0.2191 9.6433 -0.0145 39 1 -1.0907 15.2587 0.2687 40 1 3.3653 11.9843 -0.0374 41 1 4.7123 9.9367 -0.0338 42 1 5.1452 2.5676 -0.0108 43 1 6.0662 -0.6975 -0.0050 44 1 5.9102 0.8383 0.8816 45 1 5.9038 0.8332 -0.8982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005852371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -63.376119 kcal Electronic energy + Delta-G solvation = -28638.802520 eV Core-core repulsion = 24360.904427 eV Total energy + Delta-G solvation = -4277.898093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.93855 -39.50889 -39.12778 -38.74553 -37.01321 -36.67974 -33.36284 -32.43045 -30.95243 -30.66337 -30.54806 -28.75464 -27.58772 -27.45360 -25.79193 -24.37572 -22.87345 -22.25874 -22.01859 -20.60114 -19.14556 -18.80083 -18.12445 -17.33530 -17.24387 -16.85655 -16.39909 -16.24167 -15.55413 -15.21781 -15.08245 -14.80118 -14.78615 -14.49813 -14.35926 -14.33345 -13.91375 -13.60141 -13.26855 -13.10819 -13.02546 -12.84869 -12.65118 -12.44029 -12.00948 -11.84356 -11.81387 -11.69482 -11.50715 -11.31468 -11.23104 -11.18644 -11.15633 -10.69253 -10.57984 -9.66729 -9.64830 -9.56050 -9.06093 -8.93682 -8.48058 -8.13170 -7.17440 -6.73495 -4.26780 0.36015 1.05345 1.15438 2.10365 2.39763 2.88992 2.97190 2.97718 3.00088 3.06198 3.17206 3.75827 3.79793 4.19263 4.44844 4.45195 4.61375 4.78698 4.81611 4.81944 4.85694 4.92559 4.97364 5.01267 5.03668 5.15208 5.18797 5.25060 5.27484 5.34982 5.47325 5.59613 5.62239 5.82198 5.95036 5.96943 6.07171 6.11276 6.28759 6.39031 6.51828 6.58557 6.70589 6.73306 6.86781 7.07512 7.16783 7.22228 7.23148 7.57231 7.72162 7.80371 8.71111 9.37392 10.42754 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.001602 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.010173 B =17473.276583 C =18713.314198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.123 3.877 4 C -0.187 4.187 5 C -0.066 4.066 6 C -0.151 4.151 7 C 0.432 3.568 8 O -0.489 6.489 9 C -0.313 4.313 10 C 0.058 3.942 11 C -0.210 4.210 12 C -0.036 4.036 13 C -0.201 4.201 14 C 0.169 3.831 15 O -0.158 6.158 16 C -0.392 4.392 17 H 0.099 0.901 18 C 0.042 3.958 19 N -0.848 5.848 20 Si 0.946 3.054 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.244 4.244 25 C -0.029 4.029 26 C -0.121 4.121 27 C 0.084 3.916 28 O -0.308 6.308 29 C 0.025 3.975 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.275 0.725 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 -23.272 -0.220 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.077 3.923 4 C -0.206 4.206 5 C -0.084 4.084 6 C -0.152 4.152 7 C 0.318 3.682 8 O -0.372 6.372 9 C -0.332 4.332 10 C 0.039 3.961 11 C -0.211 4.211 12 C -0.055 4.055 13 C -0.220 4.220 14 C 0.112 3.888 15 O -0.058 6.058 16 C -0.468 4.468 17 H 0.117 0.883 18 C -0.165 4.165 19 N -0.480 5.480 20 Si 0.770 3.230 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.263 4.263 25 C -0.048 4.048 26 C -0.140 4.140 27 C 0.039 3.961 28 O -0.222 6.222 29 C -0.071 4.071 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.634 -23.381 -0.224 23.837 hybrid contribution 0.226 1.105 0.064 1.130 sum 4.860 -22.276 -0.159 22.800 Atomic orbital electron populations 1.23130 0.78225 1.04171 1.01577 1.86133 1.21327 1.25985 1.88340 1.18518 0.89130 0.85302 0.99395 1.21073 1.00251 0.91248 1.08024 1.21222 0.93481 0.97621 0.96115 1.20347 0.93945 0.94835 1.06088 1.18994 0.88262 0.88386 0.72524 1.90613 1.16138 1.89899 1.40580 1.22042 1.01067 0.92959 1.17121 1.22567 0.99198 0.91472 0.82879 1.18500 0.93077 0.92135 1.17359 1.20792 0.92604 0.97059 0.95009 1.20051 0.99891 0.89867 1.12182 1.19658 0.90289 0.87721 0.91144 1.83888 1.35096 1.11911 1.74908 1.21576 0.92303 0.81035 1.51853 0.88329 1.25435 0.95885 0.99305 0.95869 1.70009 1.06001 1.28684 1.43291 0.85561 0.79255 0.79635 0.78558 1.18791 1.19839 1.19824 1.20990 0.93595 0.99181 1.12539 1.20904 0.98651 0.91407 0.93825 1.21258 1.01090 0.90055 1.01574 1.18099 0.88260 0.86087 1.03693 1.86152 1.18861 1.27869 1.89304 1.23099 0.78437 1.03887 1.01630 0.88082 0.92405 0.92397 0.84132 0.84222 0.85535 0.85901 0.86306 0.86042 0.91496 0.85063 0.86765 0.83700 0.88111 0.92508 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.21 10.27 -33.75 -0.35 -3.55 16 3 C 0.12 1.37 6.71 -38.91 -0.26 1.11 16 4 C -0.19 -1.77 9.01 -39.52 -0.36 -2.13 16 5 C -0.07 -0.69 9.43 -39.19 -0.37 -1.06 16 6 C -0.15 -1.89 5.88 -104.91 -0.62 -2.50 16 7 C 0.43 6.16 6.90 -34.36 -0.24 5.92 16 8 O -0.49 -8.13 16.11 5.10 0.08 -8.05 16 9 C -0.31 -4.26 8.73 -39.28 -0.34 -4.60 16 10 C 0.06 0.85 9.42 -37.16 -0.35 0.50 16 11 C -0.21 -3.46 5.87 -105.02 -0.62 -4.08 16 12 C -0.04 -0.60 9.38 -39.30 -0.37 -0.97 16 13 C -0.20 -3.88 9.95 -39.64 -0.39 -4.28 16 14 C 0.17 3.78 6.66 -38.86 -0.26 3.52 16 15 O -0.16 -4.18 9.74 0.85 0.01 -4.17 16 16 C -0.39 -10.17 9.48 30.92 0.29 -9.88 16 17 H 0.10 2.35 5.18 -52.49 -0.27 2.07 16 18 C 0.04 1.07 5.50 -17.51 -0.10 0.98 16 19 N -0.85 -23.20 13.67 55.48 0.76 -22.44 16 20 Si 0.95 19.06 29.55 -169.99 -5.02 14.03 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 24 C -0.24 -4.89 9.12 -39.64 -0.36 -5.26 16 25 C -0.03 -0.51 9.77 -39.30 -0.38 -0.89 16 26 C -0.12 -1.46 8.58 -39.06 -0.33 -1.80 16 27 C 0.08 1.01 6.69 -39.18 -0.26 0.74 16 28 O -0.31 -3.54 10.28 -34.36 -0.35 -3.90 16 29 C 0.02 0.19 9.81 101.05 0.99 1.18 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.28 7.64 -51.93 -0.40 -0.11 16 32 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 33 H 0.14 0.93 6.27 -52.49 -0.33 0.61 16 34 H 0.14 1.19 6.19 -52.49 -0.32 0.87 16 35 H 0.13 1.47 4.23 -52.48 -0.22 1.25 16 36 H 0.12 1.76 7.45 -52.48 -0.39 1.37 16 37 H 0.12 1.58 6.16 -52.49 -0.32 1.25 16 38 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.13 2.61 5.62 -52.49 -0.29 2.31 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.15 1.66 5.87 -52.49 -0.31 1.35 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 45 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -31.51 385.93 -7.27 -38.79 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.88 Total: 5.82 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -3.34 Total: -22.35 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.76 Total: -22.44 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.61 Total: -19.67 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.51 -7.27 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005852371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.588 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds