Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00160 * 2 1 4 4 H 1.48503 * 109.47114 * 240.00398 * 3 2 1 5 5 H 1.48497 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47063 * 120.00297 * 3 2 1 7 7 C 1.37881 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99932 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46580 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99692 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99747 * 359.97438 * 11 10 9 13 13 C 1.50692 * 119.99951 * 180.02562 * 11 10 9 14 14 O 1.45194 * 109.47371 * 179.97438 * 13 11 10 15 15 C 1.34751 * 117.00236 * 179.97438 * 14 13 11 16 16 O 1.21511 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.47403 * 119.99801 * 180.02562 * 15 14 13 18 18 C 1.39762 * 120.20063 * 359.97438 * 17 15 14 19 19 C 1.37771 * 119.90295 * 180.02562 * 18 17 15 20 20 C 1.38565 * 120.31377 * 0.02562 * 19 18 17 21 21 C 1.38044 * 120.40945 * 359.97438 * 20 19 18 22 22 C 1.38737 * 120.08358 * 0.02562 * 21 20 19 23 23 O 1.35627 * 120.15445 * 179.97438 * 22 21 20 24 24 C 1.35888 * 118.00021 * 0.58423 * 23 22 21 25 25 C 1.38753 * 120.05801 * 269.72116 * 24 23 22 26 26 C 1.38135 * 119.94131 * 179.72544 * 25 24 23 27 27 C 1.38272 * 120.05821 * 0.52447 * 26 25 24 28 28 C 1.38268 * 120.11293 * 359.77684 * 27 26 25 29 29 C 1.38132 * 120.06106 * 359.94904 * 28 27 26 30 30 H 0.97004 * 119.99639 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47131 * 60.00591 * 9 7 2 32 32 H 1.08997 * 109.46821 * 299.99970 * 9 7 2 33 33 H 0.96994 * 120.00532 * 0.02562 * 10 9 7 34 34 H 1.09002 * 109.47350 * 59.99724 * 13 11 10 35 35 H 1.08999 * 109.47274 * 299.99856 * 13 11 10 36 36 H 1.07996 * 120.04539 * 0.02562 * 18 17 15 37 37 H 1.07999 * 119.83661 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.79615 * 179.72452 * 20 19 18 39 39 H 1.07992 * 119.95995 * 180.02562 * 21 20 19 40 40 H 1.08009 * 120.02878 * 359.97438 * 25 24 23 41 41 H 1.08003 * 119.97023 * 180.28303 * 26 25 24 42 42 H 1.08000 * 119.94105 * 179.74316 * 27 26 25 43 43 H 1.08002 * 119.97201 * 179.97438 * 28 27 26 44 44 H 1.08001 * 120.03117 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5611 -5.1050 -0.0011 13 6 2.7328 -6.0289 -0.0005 14 8 2.0068 -7.2863 -0.0006 15 6 2.7407 -8.4164 -0.0007 16 8 3.9541 -8.3529 -0.0001 17 6 2.0714 -9.7298 -0.0013 18 6 0.6759 -9.8077 -0.0014 19 6 0.0568 -11.0384 -0.0015 20 6 0.8110 -12.2008 -0.0010 21 6 2.1901 -12.1389 -0.0010 22 6 2.8310 -10.9084 -0.0009 23 8 4.1858 -10.8459 -0.0003 24 6 4.8784 -12.0150 -0.0121 25 6 5.2377 -12.6220 1.1828 26 6 5.9367 -13.8133 1.1680 27 6 6.2879 -14.3954 -0.0361 28 6 5.9365 -13.7893 -1.2281 29 6 5.2325 -12.6009 -1.2190 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5570 0.8897 33 1 3.1565 -3.4356 -0.0002 34 1 3.3588 -5.9713 0.8900 35 1 3.3601 -5.9711 -0.8900 36 1 0.0839 -8.9044 -0.0014 37 1 -1.0216 -11.0974 -0.0020 38 1 0.3170 -13.1612 0.0034 39 1 2.7708 -13.0494 -0.0010 40 1 4.9675 -12.1655 2.1236 41 1 6.2126 -14.2886 2.0978 42 1 6.8381 -15.3247 -0.0454 43 1 6.2124 -14.2457 -2.1673 44 1 4.9580 -12.1281 -2.1504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006350868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = -91.801712 kcal Electronic energy + Delta-G solvation = -29295.241760 eV Core-core repulsion = 24950.685130 eV Total energy + Delta-G solvation = -4344.556630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46418 -40.30354 -39.08404 -38.49017 -37.61765 -36.15496 -34.22507 -32.40141 -31.99300 -31.48999 -31.07187 -29.87161 -29.06529 -26.70637 -24.44675 -24.07457 -23.20845 -22.57547 -21.86376 -21.08756 -19.90855 -19.08893 -18.12662 -17.47672 -17.14799 -16.63153 -16.63028 -16.30689 -16.20828 -15.62027 -15.15776 -15.12676 -14.88514 -14.63795 -14.60156 -14.13246 -13.99029 -13.95918 -13.89711 -13.03573 -12.92724 -12.89087 -12.56148 -12.31364 -12.20923 -12.07344 -11.95945 -11.73471 -11.63932 -11.31488 -11.02216 -10.89197 -10.61081 -10.47807 -10.33445 -9.52711 -9.44328 -9.44118 -9.22575 -9.15185 -8.76492 -8.70848 -7.96947 -6.18372 -4.25731 0.43366 0.60093 0.83689 0.99929 2.43638 2.45606 2.67835 3.20560 3.25357 3.30148 3.30962 3.31673 3.45531 3.98608 4.33228 4.40095 4.41866 4.42916 4.47483 4.61060 4.71056 4.78852 4.86790 4.96813 5.01348 5.04536 5.17516 5.17692 5.29765 5.37715 5.37900 5.47671 5.54512 5.73813 5.83318 5.90998 5.91022 5.97169 6.07727 6.22226 6.37628 6.43396 7.18475 7.24183 7.32928 7.47341 7.61328 7.78686 7.93331 8.51971 8.72509 8.98265 9.40524 10.91685 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.001725 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.727536 B =16228.677321 C =17374.547107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.535 6.535 13 C 0.051 3.949 14 O -0.327 6.327 15 C 0.506 3.494 16 O -0.491 6.491 17 C -0.152 4.152 18 C -0.021 4.021 19 C -0.166 4.166 20 C -0.046 4.046 21 C -0.213 4.213 22 C 0.185 3.815 23 O -0.228 6.228 24 C 0.079 3.921 25 C -0.124 4.124 26 C -0.107 4.107 27 C -0.118 4.118 28 C -0.107 4.107 29 C -0.124 4.124 30 H 0.267 0.733 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.393 0.607 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -32.743 -0.046 33.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.284 3.716 12 O -0.413 6.413 13 C -0.027 4.027 14 O -0.243 6.243 15 C 0.350 3.650 16 O -0.380 6.380 17 C -0.154 4.154 18 C -0.039 4.039 19 C -0.185 4.185 20 C -0.064 4.064 21 C -0.232 4.232 22 C 0.140 3.860 23 O -0.139 6.139 24 C 0.037 3.963 25 C -0.142 4.142 26 C -0.125 4.125 27 C -0.136 4.136 28 C -0.125 4.125 29 C -0.142 4.142 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.226 0.774 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.171 0.829 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.284 -32.502 -0.043 33.541 hybrid contribution 1.114 0.999 0.001 1.496 sum 9.398 -31.503 -0.043 32.875 Atomic orbital electron populations 1.69968 1.06106 1.27494 1.48627 1.24950 0.94937 0.99467 0.94609 0.86445 0.79389 0.82183 0.78718 1.20043 1.21048 1.20049 1.21181 0.93316 0.90334 1.53596 0.91808 1.19168 0.88165 0.81516 0.98020 1.46361 1.11521 1.05350 1.72453 1.19884 0.89102 0.83974 0.78675 1.90697 1.16326 1.84586 1.49651 1.22846 0.94368 0.80808 1.04636 1.86581 1.39920 1.13765 1.83996 1.20857 0.85693 0.84699 0.73739 1.90889 1.14325 1.87683 1.45056 1.18445 0.93286 0.88164 1.15528 1.21555 0.91900 0.99616 0.90835 1.21147 1.00858 0.91739 1.04710 1.21225 0.92830 0.99078 0.93254 1.21225 0.96002 0.96059 1.09871 1.19136 0.81736 0.92792 0.92340 1.84631 1.14721 1.27938 1.86564 1.18770 0.97202 0.86882 0.93456 1.21455 0.99603 0.95327 0.97811 1.21091 0.97890 0.94903 0.98612 1.21297 0.99618 1.00305 0.92392 1.21089 0.97841 0.94823 0.98734 1.21456 0.99567 0.95516 0.97650 0.92336 0.95243 0.95253 0.77414 0.88493 0.88490 0.82895 0.84607 0.84965 0.84628 0.84985 0.85125 0.85399 0.85126 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.55 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 10 N -0.71 -14.82 5.55 -61.47 -0.34 -15.16 16 11 C 0.50 10.20 7.91 -10.99 -0.09 10.11 16 12 O -0.54 -13.10 16.50 -14.11 -0.23 -13.33 16 13 C 0.05 0.82 5.95 36.00 0.21 1.03 16 14 O -0.33 -5.48 9.01 -47.31 -0.43 -5.91 16 15 C 0.51 7.97 7.89 34.46 0.27 8.24 16 16 O -0.49 -8.57 14.95 -26.60 -0.40 -8.97 16 17 C -0.15 -2.01 5.89 -104.85 -0.62 -2.63 16 18 C -0.02 -0.23 9.61 -39.18 -0.38 -0.61 16 19 C -0.17 -1.40 10.02 -39.63 -0.40 -1.80 16 20 C -0.05 -0.35 10.03 -39.53 -0.40 -0.74 16 21 C -0.21 -1.94 9.19 -39.47 -0.36 -2.30 16 22 C 0.18 2.22 6.68 -38.65 -0.26 1.96 16 23 O -0.23 -2.99 8.05 -24.61 -0.20 -3.19 16 24 C 0.08 0.81 3.95 -39.20 -0.15 0.65 16 25 C -0.12 -1.05 9.89 -39.43 -0.39 -1.44 16 26 C -0.11 -0.67 10.04 -39.61 -0.40 -1.07 16 27 C -0.12 -0.67 10.04 -39.56 -0.40 -1.06 16 28 C -0.11 -0.67 10.04 -39.61 -0.40 -1.07 16 29 C -0.12 -1.05 9.92 -39.43 -0.39 -1.44 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.14 1.06 6.68 -52.49 -0.35 0.71 16 40 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 43 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -35.16 392.91 -9.82 -44.98 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.27 Total: 4.00 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.58 Total: 1.06 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.40 Total: -40.33 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.25 Total: -31.40 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.16 -9.82 -44.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006350868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.822 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds