Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27677 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27819 * 3 2 1 6 6 H 1.48499 * 109.47459 * 60.27380 * 3 2 1 7 7 C 1.38815 * 119.99699 * 180.28020 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72520 * 7 2 1 9 9 O 1.34852 * 119.99673 * 359.71806 * 7 2 1 10 10 C 1.34735 * 116.99367 * 180.02562 * 9 7 2 11 11 O 1.21504 * 120.00627 * 0.02562 * 10 9 7 12 12 C 1.47669 * 119.99634 * 180.02562 * 10 9 7 13 13 C 1.39682 * 120.15641 * 359.72479 * 12 10 9 14 14 C 1.37913 * 119.84627 * 179.76965 * 13 12 10 15 15 C 1.38398 * 120.15217 * 0.50936 * 14 13 12 16 16 C 1.38360 * 120.30799 * 359.74346 * 15 14 13 17 17 S 1.76200 * 119.91971 * 180.02562 * 16 15 14 18 18 O 1.42103 * 106.40588 * 23.51703 * 17 16 15 19 19 O 1.42107 * 106.40247 * 156.43617 * 17 16 15 20 20 N 1.65600 * 107.21697 * 269.97548 * 17 16 15 21 21 C 1.46502 * 119.99745 * 65.00490 * 20 17 16 22 22 C 1.53010 * 109.46834 * 165.00137 * 21 20 17 23 23 H 1.08992 * 109.81708 * 305.69114 * 22 21 20 24 24 C 1.54383 * 109.82550 * 184.81099 * 22 21 20 25 25 C 1.55452 * 102.18248 * 219.17873 * 24 22 21 26 26 C 1.54943 * 100.98926 * 34.04416 * 25 24 22 27 27 O 1.43233 * 109.83208 * 66.58359 * 22 21 20 28 28 C 1.37949 * 120.15593 * 359.97438 * 16 15 14 29 29 H 0.97000 * 120.00069 * 359.72531 * 1 2 3 30 30 H 1.07999 * 120.07411 * 0.02562 * 13 12 10 31 31 H 1.08001 * 119.92037 * 180.25126 * 14 13 12 32 32 H 1.07996 * 119.84790 * 179.76952 * 15 14 13 33 33 H 0.97001 * 120.00334 * 244.99843 * 20 17 16 34 34 H 1.09001 * 109.46919 * 284.99575 * 21 20 17 35 35 H 1.08993 * 109.47600 * 44.99758 * 21 20 17 36 36 H 1.08996 * 110.85220 * 337.31651 * 24 22 21 37 37 H 1.09001 * 110.84395 * 100.93859 * 24 22 21 38 38 H 1.09002 * 111.05853 * 276.12473 * 25 24 22 39 39 H 1.08997 * 111.18178 * 152.01034 * 25 24 22 40 40 H 1.09005 * 110.30908 * 204.69245 * 26 25 24 41 41 H 1.08992 * 110.39635 * 82.56372 * 26 25 24 42 42 H 1.08005 * 120.07667 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0068 5 1 1.8843 2.3994 -1.2091 6 1 1.8945 2.3935 1.2158 7 6 2.0082 -1.2022 -0.0059 8 1 3.0881 -1.2022 -0.0104 9 8 1.3338 -2.3700 -0.0058 10 6 2.0676 -3.5000 -0.0112 11 8 3.2810 -3.4365 -0.0153 12 6 1.3971 -4.8157 -0.0121 13 6 0.0025 -4.8925 -0.0016 14 6 -0.6171 -6.1246 -0.0073 15 6 0.1398 -7.2833 -0.0127 16 6 1.5217 -7.2146 -0.0178 17 16 2.4752 -8.6963 -0.0254 18 8 1.6393 -9.7088 -0.5688 19 8 3.7411 -8.3560 -0.5743 20 7 2.7471 -9.1123 1.5543 21 6 1.6239 -9.4884 2.4164 22 6 2.1557 -10.1739 3.6768 23 1 2.7980 -11.0097 3.3997 24 6 0.9764 -10.6814 4.5340 25 6 1.4629 -10.3715 5.9776 26 6 2.2632 -9.0652 5.7455 27 8 2.8943 -9.2342 4.4662 28 6 2.1546 -5.9889 -0.0180 29 1 -0.4850 0.8400 0.0040 30 1 -0.5893 -3.9891 0.0068 31 1 -1.6954 -6.1854 -0.0033 32 1 -0.3505 -8.2456 -0.0134 33 1 3.6500 -9.1070 1.9088 34 1 1.0660 -8.5949 2.6967 35 1 0.9674 -10.1732 1.8798 36 1 0.0647 -10.1294 4.3054 37 1 0.8281 -11.7522 4.3946 38 1 2.1080 -11.1662 6.3525 39 1 0.6212 -10.2025 6.6491 40 1 3.0152 -8.9388 6.5245 41 1 1.5918 -8.2069 5.7258 42 1 3.2334 -5.9368 -0.0225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006443046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = -172.844912 kcal Electronic energy + Delta-G solvation = -28956.005923 eV Core-core repulsion = 24607.545853 eV Total energy + Delta-G solvation = -4348.460070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92160 -39.61911 -38.23749 -37.27108 -35.88992 -35.37534 -35.24969 -32.55768 -32.34422 -31.33849 -30.99262 -30.10366 -25.82545 -25.54412 -23.70053 -23.05266 -22.18475 -21.61855 -20.64127 -19.45251 -18.16629 -17.82713 -17.60845 -17.39632 -16.48266 -16.25881 -16.17152 -15.88370 -15.20322 -14.93150 -14.71604 -14.65150 -14.50921 -14.18289 -14.11083 -13.82854 -13.37188 -13.10226 -12.82356 -12.72224 -12.62163 -12.18715 -12.16383 -12.13748 -12.06279 -11.78708 -11.62996 -11.41724 -11.38622 -11.32431 -11.26638 -10.79220 -10.58685 -10.47063 -9.95366 -9.94119 -9.72958 -9.30799 -9.20600 -8.90342 -8.70156 -6.56724 -4.18636 0.33517 0.81404 1.17435 2.82050 3.03187 3.13032 3.20805 3.23418 3.45128 3.67777 3.80716 4.02040 4.11532 4.14995 4.29736 4.43061 4.51881 4.68126 4.75208 4.83608 4.92305 4.96422 5.04462 5.11096 5.18332 5.26379 5.34709 5.35242 5.40408 5.44511 5.51630 5.55148 5.63757 5.74244 5.89836 5.97406 6.29676 6.46263 6.62752 6.71006 6.81337 6.91388 7.27993 7.81175 8.58128 8.92301 9.69415 10.60788 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.002612 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.554035 B =10717.931051 C =11670.237007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.373 4.373 8 H 0.100 0.900 9 O -0.204 6.204 10 C 0.428 3.572 11 O -0.548 6.548 12 C -0.103 4.103 13 C -0.019 4.019 14 C -0.149 4.149 15 C -0.017 4.017 16 C -0.690 4.690 17 S 2.700 3.300 18 O -0.961 6.961 19 O -0.954 6.954 20 N -1.112 6.112 21 C 0.105 3.895 22 C 0.074 3.926 23 H 0.091 0.909 24 C -0.151 4.151 25 C -0.156 4.156 26 C 0.048 3.952 27 O -0.373 6.373 28 C 0.029 3.971 29 H 0.272 0.728 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.423 0.577 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 -21.753 10.196 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.449 4.449 8 H 0.118 0.882 9 O -0.111 6.111 10 C 0.276 3.724 11 O -0.446 6.446 12 C -0.105 4.105 13 C -0.037 4.037 14 C -0.168 4.168 15 C -0.037 4.037 16 C -0.777 4.777 17 S 2.790 3.210 18 O -0.950 6.950 19 O -0.944 6.944 20 N -0.872 5.872 21 C -0.021 4.021 22 C 0.015 3.985 23 H 0.109 0.891 24 C -0.189 4.189 25 C -0.194 4.194 26 C -0.029 4.029 27 O -0.292 6.292 28 C 0.010 3.990 29 H 0.082 0.918 30 H 0.168 0.832 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.259 0.741 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.626 -21.893 9.311 23.936 hybrid contribution 0.051 1.464 0.558 1.568 sum -2.575 -20.429 9.869 22.834 Atomic orbital electron populations 1.69973 1.06118 1.28011 1.45267 1.25413 0.95897 0.99047 0.96007 0.85554 0.79587 0.79581 0.78239 1.18734 1.20004 1.20020 1.21415 0.92710 0.79562 1.51185 0.88214 1.83868 1.39244 1.13285 1.74655 1.20602 0.85943 0.85285 0.80577 1.90655 1.14886 1.87693 1.51387 1.19549 0.93811 0.92037 1.05138 1.22000 0.93993 0.99069 0.88673 1.21253 1.00475 0.92020 1.03077 1.20984 0.91516 0.99524 0.91632 1.30704 1.07552 1.18251 1.21188 1.01673 0.73474 0.73650 0.72181 1.93566 1.69697 1.55648 1.76140 1.93620 1.40539 1.84578 1.75683 1.55424 1.16231 1.84662 1.30933 1.21774 0.88499 1.00393 0.91458 1.22952 0.93371 0.91584 0.90639 0.89108 1.23180 0.98487 1.02839 0.94407 1.23295 1.00746 0.98302 0.97042 1.23428 0.96740 0.96980 0.85713 1.88484 1.50602 1.63356 1.26787 1.20959 1.00959 0.89417 0.87695 0.91832 0.83216 0.84600 0.84362 0.74134 0.90972 0.89132 0.89794 0.89427 0.90283 0.89692 0.89571 0.91861 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.21 13.67 55.49 0.76 -23.45 16 2 C 0.04 1.13 5.50 -17.52 -0.10 1.04 16 3 Si 0.95 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.37 -10.87 9.65 30.95 0.30 -10.57 16 8 H 0.10 2.94 6.86 -52.49 -0.36 2.58 16 9 O -0.20 -5.75 8.99 -21.64 -0.19 -5.95 16 10 C 0.43 10.95 7.84 34.58 0.27 11.22 16 11 O -0.55 -15.21 15.59 -19.27 -0.30 -15.51 16 12 C -0.10 -2.10 5.87 -104.98 -0.62 -2.71 16 13 C -0.02 -0.32 9.62 -39.16 -0.38 -0.70 16 14 C -0.15 -1.99 10.03 -39.64 -0.40 -2.39 16 15 C -0.02 -0.22 9.52 -39.48 -0.38 -0.59 16 16 C -0.69 -10.08 5.94 -39.64 -0.24 -10.31 16 17 S 2.70 35.30 5.74 -107.50 -0.62 34.69 16 18 O -0.96 -13.57 16.74 -57.17 -0.96 -14.52 16 19 O -0.95 -15.68 17.27 -57.17 -0.99 -16.67 16 20 N -1.11 -11.17 5.98 -10.61 -0.06 -11.24 16 21 C 0.11 0.86 5.76 -4.04 -0.02 0.84 16 22 C 0.07 0.54 3.60 -26.00 -0.09 0.44 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 C -0.15 -0.76 6.56 -24.70 -0.16 -0.92 16 25 C -0.16 -0.77 7.16 -24.40 -0.17 -0.95 16 26 C 0.05 0.34 7.78 38.18 0.30 0.64 16 27 O -0.37 -3.56 10.90 -35.23 -0.38 -3.94 16 28 C 0.03 0.53 9.07 -39.16 -0.36 0.17 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.15 2.67 7.61 -52.49 -0.40 2.27 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.14 1.34 7.60 -52.49 -0.40 0.94 16 33 H 0.42 3.92 8.57 -34.47 -0.30 3.63 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.61 7.75 -51.93 -0.40 0.21 16 36 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.15 2.79 7.20 -52.48 -0.38 2.41 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -37.04 376.45 -9.30 -46.34 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.16 Total: 3.57 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.04 Total: -14.79 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.69 Total: -34.69 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -2.82 Total: -56.59 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 35.30 SS G_CDS: -0.62 Total: 34.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.04 -9.30 -46.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006443046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.507 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds