Wall clock time and date at job start Tue Mar 31 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38306 * 119.92816 * 2 1 4 4 C 1.38082 * 120.07273 * 179.97438 * 3 2 1 5 5 C 1.38906 * 119.92952 * 0.02562 * 4 3 2 6 6 N 1.39892 * 120.07380 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00237 * 134.74864 * 6 5 4 8 8 S 1.71201 * 119.99897 * 4.14435 * 7 6 5 9 9 N 1.34769 * 120.00090 * 184.14462 * 7 6 5 10 10 C 1.46498 * 120.00111 * 0.02562 * 9 7 6 11 11 C 1.50698 * 109.47374 * 90.00009 * 10 9 7 12 12 H 1.08002 * 119.99792 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00165 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99812 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00056 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46790 * 89.99655 * 15 13 11 17 17 H 1.48493 * 109.46859 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.46616 * 329.99761 * 15 13 11 19 19 C 1.46506 * 120.00211 * 179.97438 * 9 7 6 20 20 C 1.50701 * 109.46900 * 89.99982 * 19 9 7 21 21 C 1.38241 * 120.00076 * 269.73019 * 20 19 9 22 22 C 1.38232 * 119.99778 * 179.76898 * 21 20 19 23 23 C 1.38232 * 120.00124 * 0.50547 * 22 21 20 24 24 C 1.38232 * 120.00334 * 359.74615 * 23 22 21 25 25 C 1.38232 * 119.99961 * 90.00464 * 20 19 9 26 26 C 1.38870 * 119.85497 * 359.97438 * 5 4 3 27 27 C 1.38129 * 119.92697 * 359.72584 * 26 5 4 28 28 C 1.50697 * 119.96724 * 180.29412 * 27 26 5 29 29 H 1.09004 * 109.47295 * 90.00180 * 1 2 3 30 30 H 1.08994 * 109.47114 * 330.00191 * 1 2 3 31 31 H 1.09001 * 109.47182 * 209.99766 * 1 2 3 32 32 H 1.07998 * 119.96565 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.04154 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99741 * 314.74317 * 6 5 4 35 35 H 1.09009 * 109.47237 * 210.00150 * 10 9 7 36 36 H 1.09003 * 109.47335 * 329.99804 * 10 9 7 37 37 H 0.97003 * 119.99385 * 180.02562 * 14 13 11 38 38 H 1.08994 * 109.47194 * 210.00214 * 19 9 7 39 39 H 1.09005 * 109.46927 * 330.00330 * 19 9 7 40 40 H 1.07999 * 119.99837 * 359.97438 * 21 20 19 41 41 H 1.08006 * 119.99591 * 180.22823 * 22 21 20 42 42 H 1.08001 * 120.00144 * 179.72640 * 23 22 21 43 43 H 1.07999 * 120.00765 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00429 * 359.97438 * 25 20 19 45 45 H 1.07990 * 120.03236 * 180.02562 * 26 5 4 46 46 H 1.08999 * 109.46856 * 270.25520 * 28 27 26 47 47 H 1.09006 * 109.46807 * 30.24908 * 28 27 26 48 48 H 1.08997 * 109.47292 * 150.24965 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6729 0.0001 0.0005 7 6 6.3468 -0.8216 0.8294 8 16 5.4942 -1.9401 1.8056 9 7 7.6918 -0.7627 0.8899 10 6 8.4214 0.1948 0.0550 11 6 8.5826 1.4929 0.8032 12 1 8.1814 1.5947 1.8007 13 6 9.2415 2.5511 0.2139 14 7 9.7296 2.4273 -1.0010 15 14 9.4407 4.1605 1.1411 16 1 10.7047 4.1297 1.9200 17 1 9.4823 5.2868 0.1743 18 1 8.2935 4.3441 2.0660 19 6 8.4244 -1.6555 1.7914 20 6 8.7645 -2.9324 1.0667 21 6 7.8890 -4.0016 1.1023 22 6 8.1988 -5.1711 0.4337 23 6 9.3888 -5.2751 -0.2619 24 6 10.2667 -4.2078 -0.2932 25 6 9.9545 -3.0364 0.3712 26 6 3.5781 -1.2017 0.0005 27 6 2.1968 -1.1983 0.0063 28 6 1.4408 -2.5019 0.0130 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.6553 2.1329 0.0004 33 1 4.1162 2.1384 0.0010 34 1 6.1578 0.5914 -0.5961 35 1 9.4043 -0.2095 -0.1873 36 1 7.8648 0.3725 -0.8652 37 1 10.1935 3.1716 -1.4155 38 1 9.3426 -1.1679 2.1187 39 1 7.8051 -1.8839 2.6588 40 1 6.9614 -3.9220 1.6498 41 1 7.5130 -6.0052 0.4585 42 1 9.6329 -6.1904 -0.7806 43 1 11.1967 -4.2892 -0.8363 44 1 10.6404 -2.2026 0.3466 45 1 4.1164 -2.1379 0.0010 46 1 1.2583 -2.8212 -1.0131 47 1 2.0287 -3.2601 0.5303 48 1 0.4889 -2.3672 0.5265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006488063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:31 Heat of formation + Delta-G solvation = 64.207749 kcal Electronic energy + Delta-G solvation = -28647.197897 eV Core-core repulsion = 24985.710972 eV Total energy + Delta-G solvation = -3661.486925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.99878 -39.20772 -38.06544 -35.61410 -33.20728 -32.49426 -31.73799 -30.78639 -30.58366 -28.30388 -27.23705 -26.63913 -25.13817 -24.16953 -22.34157 -22.11486 -21.40489 -20.57725 -20.34125 -17.71861 -17.36558 -17.00631 -16.36350 -15.52936 -15.44934 -15.14080 -14.96952 -14.86808 -14.66965 -14.18871 -13.98469 -13.64168 -13.44627 -13.11944 -12.86495 -12.80293 -12.63994 -12.56828 -12.34714 -12.26898 -11.92688 -11.80388 -11.72059 -11.41498 -11.21656 -11.05709 -11.01831 -10.92521 -10.81623 -10.68083 -10.61169 -10.25404 -10.04736 -8.94270 -8.86815 -8.60998 -8.58169 -8.45441 -7.78092 -7.15195 -6.55881 -6.46135 -4.59028 1.36862 1.56284 1.72968 1.75102 2.15676 2.52523 3.07239 3.15507 3.18333 3.22267 3.83246 4.03270 4.11031 4.23870 4.86174 5.02022 5.05156 5.09894 5.15021 5.25772 5.26937 5.28712 5.44723 5.53799 5.59242 5.60682 5.65792 5.79668 5.81677 5.92754 5.95518 5.96859 6.02960 6.09541 6.12377 6.27590 6.30706 6.34645 6.42699 6.59437 6.64276 6.68725 6.75299 6.82728 6.85768 6.93615 6.99871 7.12595 7.29986 7.32762 7.44724 7.59466 7.62953 7.86361 8.49197 9.11479 10.58631 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.006654 B = 0.004656 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4206.801181 B = 6012.298934 C = 9555.553703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.126 4.126 5 C 0.136 3.864 6 N -0.632 5.632 7 C 0.575 3.425 8 S -0.691 6.691 9 N -0.530 5.530 10 C 0.224 3.776 11 C -0.550 4.550 12 H 0.066 0.934 13 C 0.071 3.929 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.150 3.850 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.064 4.064 27 C -0.087 4.087 28 C -0.110 4.110 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.417 0.583 35 H 0.054 0.946 36 H 0.034 0.966 37 H 0.270 0.730 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.148 0.852 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -8.043 -1.215 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.042 3.958 6 N -0.260 5.260 7 C 0.214 3.786 8 S -0.558 6.558 9 N -0.231 5.231 10 C 0.102 3.898 11 C -0.589 4.589 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.522 5.522 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.196 1.196 19 C 0.027 3.973 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.151 4.151 25 C -0.120 4.120 26 C -0.087 4.087 27 C -0.089 4.089 28 C -0.167 4.167 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.168 0.832 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.783 -8.612 -0.707 12.321 hybrid contribution 1.232 2.032 -0.489 2.426 sum -7.551 -6.580 -1.197 10.087 Atomic orbital electron populations 1.20805 0.91774 1.02489 1.01844 1.19699 0.95604 0.92748 1.01384 1.20624 0.93066 0.97308 1.02681 1.20944 0.94445 0.96664 1.02627 1.17430 0.80680 0.94228 1.03429 1.42282 1.05210 1.40080 1.38388 1.21990 0.85494 0.86482 0.84683 1.92785 1.68188 1.42124 1.52749 1.47554 1.02379 1.34174 1.39016 1.19800 0.93082 0.87150 0.89720 1.21351 1.38690 0.96260 1.02571 0.91532 1.24944 0.94411 0.99170 0.94875 1.69914 1.36052 1.32816 1.13410 0.86398 0.79022 0.82037 0.79600 1.20152 1.20816 1.19556 1.20748 0.97569 0.86517 0.92422 1.20142 0.94865 0.95666 0.99750 1.21850 0.99644 0.91733 0.97568 1.21172 0.96982 0.98170 0.98830 1.21121 0.94795 0.98440 0.99540 1.21046 0.99737 0.93753 1.00577 1.21190 0.96767 0.97632 0.96411 1.21403 0.93246 0.98484 0.95557 1.19481 0.92999 0.94666 1.01778 1.20773 0.99712 0.94489 1.01705 0.91595 0.92020 0.91355 0.86184 0.85899 0.74121 0.92810 0.94811 0.92047 0.88705 0.86957 0.83196 0.86525 0.86767 0.86520 0.86017 0.83435 0.91754 0.91361 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.61 36.01 0.35 -0.76 16 2 C -0.09 -1.24 5.88 -104.59 -0.62 -1.85 16 3 C -0.12 -1.61 9.69 -39.61 -0.38 -1.99 16 4 C -0.13 -1.98 9.97 -39.39 -0.39 -2.37 16 5 C 0.14 2.36 5.93 -83.70 -0.50 1.87 16 6 N -0.63 -11.74 5.19 -11.40 -0.06 -11.80 16 7 C 0.58 11.37 7.56 -86.93 -0.66 10.71 16 8 S -0.69 -13.98 21.70 -107.50 -2.33 -16.31 16 9 N -0.53 -10.34 2.44 -178.46 -0.44 -10.77 16 10 C 0.22 4.86 4.96 -5.20 -0.03 4.83 16 11 C -0.55 -13.23 9.39 -34.44 -0.32 -13.55 16 12 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -22.67 13.29 55.43 0.74 -21.94 16 15 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.15 2.65 5.36 -5.19 -0.03 2.62 16 20 C -0.10 -1.70 5.46 -104.62 -0.57 -2.27 16 21 C -0.09 -1.43 9.27 -39.58 -0.37 -1.80 16 22 C -0.13 -1.89 10.05 -39.59 -0.40 -2.28 16 23 C -0.12 -1.60 10.05 -39.59 -0.40 -1.99 16 24 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 26 C -0.06 -1.08 7.52 -39.39 -0.30 -1.37 16 27 C -0.09 -1.26 5.88 -104.65 -0.62 -1.87 16 28 C -0.11 -1.27 9.60 36.00 0.35 -0.93 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.07 0.61 5.93 -51.93 -0.31 0.31 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.42 7.77 6.52 -40.82 -0.27 7.50 16 35 H 0.05 1.22 8.07 -51.92 -0.42 0.80 16 36 H 0.03 0.76 6.30 -51.93 -0.33 0.43 16 37 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.09 1.62 8.01 -51.93 -0.42 1.20 16 39 H 0.11 2.04 6.52 -51.93 -0.34 1.70 16 40 H 0.15 2.59 5.84 -52.49 -0.31 2.28 16 41 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 42 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 44 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.15 2.67 6.09 -44.12 -0.27 2.40 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 48 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -27.11 401.01 -13.55 -40.66 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -6.73 Total: 15.19 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -5.76 Total: -15.57 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.24 Total: -44.51 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: -13.98 SS G_CDS: -2.33 Total: -16.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -27.11 -13.55 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006488063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.872 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds