Wall clock time and date at job start Tue Mar 31 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35902 * 116.99931 * 2 1 4 4 C 1.38749 * 120.05443 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.94277 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05312 * 359.74380 * 5 4 3 7 7 C 1.38242 * 120.11304 * 0.51242 * 6 5 4 8 8 C 1.50705 * 119.97151 * 179.76339 * 7 6 5 9 9 S 1.81000 * 109.47269 * 269.72324 * 8 7 6 10 10 C 1.76196 * 100.00200 * 179.97438 * 9 8 7 11 11 N 1.31062 * 125.07582 * 0.14804 * 10 9 8 12 12 C 1.35870 * 109.61806 * 180.26667 * 11 10 9 13 13 C 1.39728 * 133.37478 * 179.78535 * 12 11 10 14 14 C 1.37696 * 119.77747 * 180.02562 * 13 12 11 15 15 C 1.38701 * 120.49548 * 359.95962 * 14 13 12 16 16 C 1.37982 * 120.43219 * 359.97438 * 15 14 13 17 17 C 1.38650 * 119.85467 * 0.02694 * 16 15 14 18 18 N 1.36639 * 125.08229 * 180.02562 * 10 9 8 19 19 C 1.46491 * 126.37958 * 0.02562 * 18 10 9 20 20 C 1.50702 * 109.46957 * 269.68436 * 19 18 10 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 C 1.38158 * 120.05796 * 359.49072 * 7 6 5 29 29 H 1.08996 * 109.47273 * 300.00074 * 1 2 3 30 30 H 1.08995 * 109.47565 * 60.00462 * 1 2 3 31 31 H 1.09008 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.03008 * 359.95830 * 4 3 2 33 33 H 1.08001 * 119.97031 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.94393 * 180.27899 * 6 5 4 35 35 H 1.09002 * 109.46889 * 149.72205 * 8 7 6 36 36 H 1.09001 * 109.46931 * 29.72808 * 8 7 6 37 37 H 1.07998 * 120.11020 * 359.97438 * 13 12 11 38 38 H 1.07994 * 119.75048 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.78254 * 180.02562 * 15 14 13 40 40 H 1.08003 * 120.07125 * 180.02562 * 16 15 14 41 41 H 1.09004 * 109.47166 * 149.68702 * 19 18 10 42 42 H 1.08994 * 109.47507 * 29.68409 * 19 18 10 43 43 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.03647 * 180.23431 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0064 7 6 4.0558 2.5171 0.0006 8 6 5.5607 2.5983 0.0010 9 16 6.1637 2.6312 -1.7053 10 6 7.8990 2.7254 -1.4148 11 7 8.4644 2.7532 -0.2327 12 6 9.8133 2.8334 -0.3740 13 6 10.8715 2.8954 0.5364 14 6 12.1666 2.9732 0.0752 15 6 12.4291 2.9897 -1.2866 16 6 11.3953 2.9279 -2.1984 17 6 10.0850 2.8492 -1.7520 18 7 8.8565 2.7780 -2.3882 19 6 8.6263 2.7668 -3.8349 20 6 8.6319 1.3446 -4.3334 21 1 8.7905 0.5305 -3.6416 22 6 8.4282 1.0824 -5.6716 23 7 8.4276 -0.1590 -6.1058 24 14 8.1532 2.4904 -6.8680 25 1 9.4599 2.9416 -7.4102 26 1 7.2867 2.0305 -7.9829 27 1 7.4942 3.6184 -6.1619 28 6 3.4311 1.2849 0.0000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2127 2.3203 0.0003 33 1 1.3339 4.5114 0.0019 34 1 3.7921 4.6381 0.0114 35 1 5.9712 1.7290 0.5148 36 1 5.8754 3.5063 0.5153 37 1 10.6742 2.8831 1.5981 38 1 12.9842 3.0215 0.7792 39 1 13.4494 3.0506 -1.6356 40 1 11.6064 2.9407 -3.2575 41 1 9.4161 3.3294 -4.3328 42 1 7.6615 3.2244 -4.0529 43 1 8.2846 -0.3435 -7.0472 44 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006648181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:03 Heat of formation + Delta-G solvation = 41.827054 kcal Electronic energy + Delta-G solvation = -27200.144177 eV Core-core repulsion = 23401.853658 eV Total energy + Delta-G solvation = -3798.290519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.86645 -41.11289 -38.63977 -38.14833 -36.01768 -34.35302 -33.62978 -31.53651 -31.49348 -30.39040 -29.58076 -28.48231 -27.68237 -24.98154 -24.54203 -23.56423 -22.99662 -22.20207 -21.52403 -19.33136 -19.06124 -18.23620 -18.13649 -17.45164 -17.28630 -16.98119 -16.68694 -16.64312 -16.18259 -16.02867 -15.38858 -15.13153 -15.05156 -14.97109 -14.71561 -14.54404 -14.24786 -14.05624 -13.78818 -13.50257 -13.44631 -12.92609 -12.85944 -12.78306 -12.63696 -12.55877 -12.39902 -12.24607 -12.10988 -11.89379 -11.80841 -11.65285 -11.16310 -11.08500 -10.93577 -10.02031 -9.86416 -9.20434 -9.02659 -8.48009 -8.45611 -6.57569 -0.27326 -0.04578 0.43183 0.49433 0.64258 1.15967 1.28605 1.30758 1.40473 1.63863 1.96745 2.20603 2.34088 2.79669 2.85798 2.94475 3.40082 3.54472 3.79724 3.95737 4.01747 4.11271 4.14711 4.18562 4.27862 4.34797 4.36445 4.40867 4.48286 4.48754 4.53257 4.59814 4.68557 4.73882 4.75373 4.87435 4.98918 5.13153 5.26935 5.27379 5.41871 5.53237 5.54259 5.59184 5.65943 5.74518 5.82591 5.97920 6.18574 6.43952 6.44837 6.69120 7.06475 8.70927 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.003228 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.322802 B = 8671.520870 C =10962.235516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.114 3.886 4 C -0.198 4.198 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.047 4.047 8 C -0.049 4.049 9 S -0.004 6.004 10 C 0.243 3.757 11 N -0.518 5.518 12 C 0.022 3.978 13 C -0.082 4.082 14 C -0.117 4.117 15 C -0.100 4.100 16 C -0.123 4.123 17 C 0.027 3.973 18 N -0.459 5.459 19 C 0.223 3.777 20 C -0.549 4.549 21 H 0.024 0.976 22 C 0.029 3.971 23 N -0.931 5.931 24 Si 0.941 3.059 25 H -0.255 1.255 26 H -0.272 1.272 27 H -0.243 1.243 28 C -0.155 4.155 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.118 0.882 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.275 0.725 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 9.991 13.479 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.217 4.217 5 C -0.094 4.094 6 C -0.162 4.162 7 C -0.050 4.050 8 C -0.197 4.197 9 S 0.231 5.769 10 C -0.130 4.130 11 N -0.245 5.245 12 C -0.100 4.100 13 C -0.103 4.103 14 C -0.138 4.138 15 C -0.120 4.120 16 C -0.145 4.145 17 C -0.084 4.084 18 N -0.147 5.147 19 C 0.102 3.898 20 C -0.587 4.587 21 H 0.042 0.958 22 C -0.171 4.171 23 N -0.569 5.569 24 Si 0.762 3.238 25 H -0.180 1.180 26 H -0.197 1.197 27 H -0.167 1.167 28 C -0.176 4.176 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.162 0.838 38 H 0.188 0.812 39 H 0.181 0.819 40 H 0.136 0.864 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.470 9.605 12.867 19.732 hybrid contribution 0.878 -0.300 -0.665 1.142 sum -10.592 9.305 12.201 18.645 Atomic orbital electron populations 1.23363 0.76206 1.05548 1.02510 1.86067 1.23744 1.26988 1.88718 1.19089 0.91900 0.85308 0.96860 1.21620 1.01428 0.91673 1.07018 1.21305 0.93913 0.98246 0.95903 1.21256 0.94641 0.97860 1.02394 1.18966 0.92002 0.93591 1.00396 1.22384 0.94632 1.08006 0.94715 1.86072 0.86851 1.92230 1.11753 1.25630 0.98030 1.03153 0.86174 1.70834 1.06373 1.26406 1.20844 1.19602 0.91496 1.06805 0.92063 1.20539 0.90148 1.00824 0.98742 1.21298 0.96002 1.00507 0.95947 1.21286 0.98839 0.99108 0.92736 1.20315 0.88883 1.04368 1.00892 1.19503 0.88208 1.07224 0.93463 1.45518 1.04182 1.57229 1.07810 1.19845 0.98645 0.97552 0.73740 1.21084 1.52507 0.90749 0.94355 0.95792 1.25739 0.93088 0.98733 0.99576 1.70018 1.49038 1.21171 1.16634 0.85816 0.79939 0.79317 0.78734 1.17955 1.19666 1.16684 1.20395 0.92559 0.98090 1.06525 0.91041 0.91614 0.86723 0.82523 0.82090 0.83909 0.88638 0.86709 0.83809 0.81227 0.81904 0.86377 0.92782 0.92716 0.91612 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.05 10.50 -92.45 -0.97 -9.02 16 3 C 0.11 2.78 6.69 22.51 0.15 2.93 16 4 C -0.20 -3.63 9.04 22.37 0.20 -3.43 16 5 C -0.08 -1.31 10.04 22.25 0.22 -1.08 16 6 C -0.14 -3.01 9.70 22.28 0.22 -2.80 16 7 C -0.05 -1.25 5.13 -19.88 -0.10 -1.36 16 8 C -0.05 -1.48 5.28 71.24 0.38 -1.11 16 9 S 0.00 -0.14 21.52 -56.49 -1.22 -1.35 16 10 C 0.24 10.85 7.93 179.58 1.42 12.28 16 11 N -0.52 -22.29 10.57 -188.40 -1.99 -24.28 16 12 C 0.02 0.89 7.22 39.42 0.28 1.18 16 13 C -0.08 -2.60 10.10 22.50 0.23 -2.37 16 14 C -0.12 -2.99 10.01 22.25 0.22 -2.77 16 15 C -0.10 -2.78 10.03 22.32 0.22 -2.56 16 16 C -0.12 -4.62 10.04 22.31 0.22 -4.39 16 17 C 0.03 1.21 6.87 38.72 0.27 1.48 16 18 N -0.46 -21.87 2.82 -519.70 -1.46 -23.33 16 19 C 0.22 10.93 4.76 85.64 0.41 11.34 16 20 C -0.55 -32.01 9.94 25.60 0.25 -31.75 16 21 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 22 C 0.03 1.67 5.47 84.66 0.46 2.13 16 23 N -0.93 -57.08 13.96 21.45 0.30 -56.78 16 24 Si 0.94 41.52 27.47 68.60 1.88 43.40 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 28 C -0.15 -4.35 9.64 22.37 0.22 -4.13 16 29 H 0.07 0.67 7.66 -2.39 -0.02 0.66 16 30 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 31 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 33 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.10 3.02 8.08 -2.39 -0.02 3.01 16 36 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 37 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.05 2.49 7.58 -2.38 -0.02 2.47 16 42 H 0.06 2.60 6.72 -2.39 -0.02 2.59 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -76.89 388.29 3.89 -73.00 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.96 Total: 23.44 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 6.39 Total: -25.07 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.16 Total: -104.40 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.97 Total: -9.02 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.22 Total: -1.35 kcal Total: -76.89 3.89 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006648181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.825 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds