Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31500 * 1 3 3 Si 1.86800 * 120.00678 * 2 1 4 4 H 1.48500 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46850 * 300.00065 * 3 2 1 6 6 H 1.48499 * 109.47081 * 59.99797 * 3 2 1 7 7 C 1.38840 * 119.99462 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99859 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.76207 * 99.99653 * 180.02562 * 9 7 2 11 11 N 1.31050 * 118.46063 * 0.25413 * 10 9 7 12 12 C 1.34521 * 121.76730 * 180.28265 * 11 10 9 13 13 N 1.33411 * 121.46042 * 179.71687 * 12 11 10 14 14 C 1.31806 * 119.63537 * 180.02562 * 13 12 11 15 15 C 1.39162 * 120.71374 * 359.97438 * 14 13 12 16 16 N 1.31813 * 120.52669 * 359.97438 * 15 14 13 17 17 C 1.32600 * 119.60733 * 0.02562 * 16 15 14 18 18 C 1.47344 * 121.75675 * 179.97438 * 17 16 15 19 19 O 1.21681 * 121.26116 * 0.02562 * 18 17 16 20 20 N 1.35336 * 117.48770 * 180.02562 * 18 17 16 21 21 C 1.46499 * 119.80526 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.46840 * 89.99990 * 21 20 18 23 23 C 1.50703 * 109.46912 * 180.02562 * 22 21 20 24 24 C 1.38234 * 119.99770 * 269.72838 * 23 22 21 25 25 C 1.38239 * 119.99901 * 179.76875 * 24 23 22 26 26 C 1.38240 * 119.99645 * 0.50240 * 25 24 23 27 27 C 1.38227 * 120.00205 * 359.74956 * 26 25 24 28 28 C 1.38232 * 119.99860 * 90.00280 * 23 22 21 29 29 H 0.97001 * 119.99761 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.64001 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.73763 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.46813 * 330.00264 * 21 20 18 33 33 H 1.08992 * 109.47397 * 210.00325 * 21 20 18 34 34 H 1.09002 * 109.47398 * 300.00326 * 22 21 20 35 35 H 1.09001 * 109.47194 * 60.00507 * 22 21 20 36 36 H 1.08001 * 120.00330 * 359.97438 * 24 23 22 37 37 H 1.08001 * 119.99843 * 180.23314 * 25 24 23 38 38 H 1.08002 * 119.99612 * 179.72381 * 26 25 24 39 39 H 1.07996 * 120.00251 * 179.97438 * 27 26 25 40 40 H 1.07998 * 120.00407 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0091 -1.2025 -0.0005 8 1 3.0890 -1.2025 -0.0010 9 16 1.1279 -2.7283 -0.0005 10 6 2.4776 -3.8610 -0.0005 11 7 3.6966 -3.3799 0.0046 12 6 4.7753 -4.1838 -0.0007 13 7 6.0136 -3.6874 -0.0011 14 6 7.0448 -4.5083 -0.0069 15 6 6.8558 -5.8870 -0.0121 16 7 5.6399 -6.3961 -0.0108 17 6 4.5904 -5.5857 -0.0050 18 6 3.2109 -6.1034 -0.0039 19 8 2.9851 -7.2991 -0.0078 20 7 2.2042 -5.1988 0.0017 21 6 0.8130 -5.6577 0.0025 22 6 0.3314 -5.8232 1.4453 23 6 -1.0996 -6.2958 1.4461 24 6 -2.1313 -5.3758 1.4573 25 6 -3.4439 -5.8093 1.4532 26 6 -3.7248 -7.1628 1.4485 27 6 -2.6931 -8.0828 1.4426 28 6 -1.3804 -7.6493 1.4415 29 1 -0.4850 0.8401 0.0004 30 1 8.0473 -4.1065 -0.0076 31 1 7.7121 -6.5451 -0.0172 32 1 0.7457 -6.6147 -0.5150 33 1 0.1882 -4.9243 -0.5072 34 1 0.9562 -6.5566 1.9550 35 1 0.3986 -4.8662 1.9628 36 1 -1.9118 -4.3184 1.4658 37 1 -4.2500 -5.0904 1.4581 38 1 -4.7504 -7.5015 1.4498 39 1 -2.9126 -9.1402 1.4393 40 1 -0.5744 -8.3681 1.4376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006818559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = 63.307439 kcal Electronic energy + Delta-G solvation = -27677.493464 eV Core-core repulsion = 23776.594061 eV Total energy + Delta-G solvation = -3900.899403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.089 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46818 -39.72186 -39.07070 -37.18379 -35.08996 -33.91602 -33.06180 -32.55944 -30.84794 -30.22226 -28.70093 -26.11122 -25.77971 -25.21018 -23.44442 -22.58378 -22.40696 -20.97949 -19.96589 -18.81056 -18.15763 -17.29588 -16.86257 -16.21093 -15.95512 -15.51641 -15.45693 -15.23807 -15.18288 -14.93968 -14.41354 -14.18612 -13.59439 -13.35485 -13.25914 -13.20667 -13.13579 -12.92488 -12.74876 -12.03804 -11.71648 -11.40035 -11.36072 -11.31244 -11.28962 -11.09832 -10.93231 -10.79523 -10.53876 -10.33828 -9.84649 -9.80958 -9.63669 -9.29696 -8.88616 -8.73992 -8.38988 -8.32526 -7.30640 -6.83985 -4.57926 0.50979 0.91834 1.34302 1.43617 2.01434 2.52778 2.75720 2.88655 3.03574 3.07791 3.18049 3.68748 3.80192 4.03647 4.16296 4.33344 4.55527 4.66520 4.67516 4.80934 4.84532 4.95808 5.01797 5.10661 5.17881 5.18443 5.30523 5.35465 5.51640 5.53951 5.54681 5.63156 5.79819 5.94548 6.11276 6.13505 6.21878 6.48641 6.54357 6.55346 6.66493 6.72863 7.03362 7.26628 7.47553 7.77670 8.02421 8.17491 8.47667 8.71539 10.22198 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.006855 B = 0.004760 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4083.395987 B = 5881.510458 C = 9820.008667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.080 3.920 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.125 0.875 9 S 0.222 5.778 10 C 0.332 3.668 11 N -0.528 5.528 12 C 0.352 3.648 13 N -0.452 5.452 14 C 0.124 3.876 15 C -0.017 4.017 16 N -0.362 5.362 17 C -0.080 4.080 18 C 0.573 3.427 19 O -0.501 6.501 20 N -0.533 5.533 21 C 0.101 3.899 22 C -0.098 4.098 23 C -0.076 4.076 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.114 4.114 29 H 0.281 0.719 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 -9.040 1.794 9.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.132 4.132 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.690 4.690 8 H 0.143 0.857 9 S 0.468 5.532 10 C -0.032 4.032 11 N -0.259 5.259 12 C 0.104 3.896 13 N -0.171 5.171 14 C -0.048 4.048 15 C -0.186 4.186 16 N -0.077 5.077 17 C -0.227 4.227 18 C 0.362 3.638 19 O -0.373 6.373 20 N -0.259 5.259 21 C -0.022 4.022 22 C -0.136 4.136 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.132 4.132 29 H 0.091 0.909 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.328 -8.923 1.791 9.691 hybrid contribution 1.876 0.326 -0.024 1.904 sum -1.452 -8.597 1.767 8.896 Atomic orbital electron populations 1.69872 1.06368 1.29421 1.43932 1.25253 0.95210 1.00290 0.92419 0.85800 0.80544 0.79475 0.78215 1.18274 1.20062 1.20048 1.23938 0.98719 0.88920 1.57460 0.85698 1.83556 0.98377 0.96428 1.74832 1.26424 0.99579 0.85446 0.91753 1.68599 0.94324 1.32243 1.30761 1.20235 0.92402 0.87198 0.89771 1.68423 0.97314 1.37704 1.13615 1.24032 0.98708 0.91330 0.90714 1.23555 0.94826 0.94833 1.05416 1.67797 0.98406 1.38555 1.02962 1.22126 0.94134 0.92234 1.14244 1.17909 0.83737 0.85631 0.76529 1.90794 1.84346 1.14002 1.48120 1.46536 1.08771 1.05673 1.64947 1.21952 0.79107 1.02852 0.98270 1.20934 0.92794 1.03335 0.96524 1.19666 0.94488 0.93448 1.00105 1.21262 0.92278 1.00156 0.98903 1.21175 0.96677 0.95744 1.00106 1.21140 0.98959 0.93444 1.00823 1.21102 0.92790 0.99435 1.00785 1.21121 0.96786 0.95224 1.00045 0.90932 0.81058 0.81369 0.88151 0.87847 0.90315 0.89352 0.85088 0.85983 0.86403 0.86311 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.10 13.22 55.49 0.73 -20.37 16 2 C 0.08 1.92 5.49 -17.47 -0.10 1.83 16 3 Si 0.94 19.22 29.55 -169.99 -5.02 14.19 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.54 -13.30 9.23 30.96 0.29 -13.02 16 8 H 0.13 3.24 6.48 -52.49 -0.34 2.90 16 9 S 0.22 4.67 19.44 -107.50 -2.09 2.58 16 10 C 0.33 6.87 7.77 -88.52 -0.69 6.18 16 11 N -0.53 -11.93 8.34 -12.46 -0.10 -12.04 16 12 C 0.35 7.49 7.65 -157.47 -1.20 6.28 16 13 N -0.45 -8.73 10.56 -12.46 -0.13 -8.86 16 14 C 0.12 1.76 11.20 -17.22 -0.19 1.57 16 15 C -0.02 -0.24 11.21 -17.22 -0.19 -0.43 16 16 N -0.36 -6.75 10.37 -9.33 -0.10 -6.85 16 17 C -0.08 -1.63 6.80 -82.63 -0.56 -2.19 16 18 C 0.57 11.59 7.69 -12.30 -0.09 11.49 16 19 O -0.50 -10.56 16.73 5.21 0.09 -10.48 16 20 N -0.53 -9.92 2.62 -117.26 -0.31 -10.23 16 21 C 0.10 1.54 4.87 -4.04 -0.02 1.52 16 22 C -0.10 -1.37 5.67 -27.88 -0.16 -1.53 16 23 C -0.08 -0.99 5.13 -104.62 -0.54 -1.52 16 24 C -0.11 -1.36 9.70 -39.58 -0.38 -1.74 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.13 -1.31 10.05 -39.58 -0.40 -1.70 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 28 C -0.11 -1.36 9.70 -39.58 -0.38 -1.75 16 29 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.10 1.48 7.47 -51.93 -0.39 1.09 16 33 H 0.10 1.52 6.47 -51.93 -0.34 1.18 16 34 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -30.25 365.68 -10.84 -41.09 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.00 Total: 3.90 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -5.42 Total: 1.54 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.09 Total: -58.34 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -2.09 Total: 2.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.25 -10.84 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006818559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.398 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds