Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00185 * 2 1 4 4 H 1.48499 * 109.46832 * 270.00197 * 3 2 1 5 5 H 1.48500 * 109.47002 * 29.99692 * 3 2 1 6 6 H 1.48496 * 109.47341 * 149.99807 * 3 2 1 7 7 C 1.37873 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00264 * 0.02562 * 7 2 1 10 10 S 1.80997 * 109.47482 * 180.02562 * 9 7 2 11 11 C 1.76198 * 100.00067 * 180.02562 * 10 9 7 12 12 N 1.31417 * 126.39970 * 359.97405 * 11 10 9 13 13 N 1.28488 * 110.14940 * 180.02562 * 12 11 10 14 14 C 1.31294 * 110.02936 * 359.97438 * 13 12 11 15 15 C 1.47784 * 126.48754 * 180.02562 * 14 13 12 16 16 C 1.39578 * 120.16452 * 132.64705 * 15 14 13 17 17 C 1.37934 * 119.87852 * 179.72323 * 16 15 14 18 18 C 1.38391 * 120.19713 * 0.55220 * 17 16 15 19 19 C 1.38299 * 120.32400 * 359.72145 * 18 17 16 20 20 C 1.38220 * 120.11558 * 0.02562 * 19 18 17 21 21 F 1.35103 * 120.09980 * 179.97438 * 20 19 18 22 22 N 1.36849 * 126.39605 * 179.97438 * 11 10 9 23 23 C 1.40177 * 127.20708 * 0.24656 * 22 11 10 24 24 C 1.38834 * 120.06634 * 112.75846 * 23 22 11 25 25 C 1.38121 * 119.92864 * 179.78716 * 24 23 22 26 26 C 1.38274 * 120.07229 * 0.48387 * 25 24 23 27 27 C 1.38282 * 120.12830 * 359.74608 * 26 25 24 28 28 C 1.38122 * 120.06600 * 0.02562 * 27 26 25 29 29 H 0.96998 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46776 * 59.99636 * 9 7 2 31 31 H 1.09001 * 109.47157 * 300.00230 * 9 7 2 32 32 H 1.08005 * 120.05831 * 359.97056 * 16 15 14 33 33 H 1.07997 * 119.90491 * 180.27102 * 17 16 15 34 34 H 1.08003 * 119.84292 * 179.73975 * 18 17 16 35 35 H 1.07993 * 119.94319 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.02842 * 0.02562 * 24 23 22 37 37 H 1.07999 * 119.96233 * 180.25036 * 25 24 23 38 38 H 1.08000 * 119.93543 * 179.72326 * 26 25 24 39 39 H 1.07997 * 119.96676 * 179.97438 * 27 26 25 40 40 H 1.07997 * 120.02994 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4272 -3.8749 0.0021 11 6 1.3071 -5.2350 0.0010 12 7 -0.0052 -5.1646 0.0000 13 7 -0.5118 -6.3454 0.0000 14 6 0.4445 -7.2450 0.0005 15 6 0.2704 -8.7126 0.0001 16 6 1.0003 -9.5052 -0.8872 17 6 0.8374 -10.8748 -0.8786 18 6 -0.0556 -11.4641 -0.0009 19 6 -0.7872 -10.6862 0.8780 20 6 -0.6306 -9.3130 0.8842 21 9 -1.3458 -8.5533 1.7425 22 7 1.6412 -6.5621 0.0011 23 6 2.9308 -7.1115 0.0068 24 6 3.3831 -7.8131 1.1163 25 6 4.6527 -8.3570 1.1171 26 6 5.4766 -8.1949 0.0186 27 6 5.0307 -7.4926 -1.0860 28 6 3.7604 -6.9503 -1.0946 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.6942 -9.0471 -1.5766 33 1 1.4051 -11.4889 -1.5620 34 1 -0.1817 -12.5368 -0.0019 35 1 -1.4821 -11.1526 1.5606 36 1 2.7413 -7.9366 1.9761 37 1 5.0035 -8.9063 1.9782 38 1 6.4706 -8.6173 0.0234 39 1 5.6766 -7.3672 -1.9424 40 1 3.4125 -6.4023 -1.9577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006830944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = 86.829593 kcal Electronic energy + Delta-G solvation = -27705.286138 eV Core-core repulsion = 23720.060860 eV Total energy + Delta-G solvation = -3985.225278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.085 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.94165 -42.67802 -39.39558 -39.05795 -34.80846 -33.20402 -32.62641 -31.29166 -30.91249 -29.84187 -29.29613 -28.49313 -24.54217 -23.41612 -23.14907 -23.05451 -22.92125 -21.72772 -20.75774 -18.73200 -17.71020 -16.90375 -16.62634 -16.57224 -16.22454 -16.11228 -15.82410 -15.58717 -14.85576 -14.70344 -14.62204 -14.51176 -14.08510 -13.75192 -13.37817 -13.19872 -13.02223 -12.65703 -12.43902 -12.38808 -12.26198 -12.11690 -11.63230 -11.53956 -11.29981 -10.94404 -10.88175 -10.68949 -10.43183 -10.26826 -10.00612 -9.69274 -9.32258 -9.24003 -9.21684 -9.00887 -8.85233 -8.60051 -6.93013 -6.20899 -4.29807 0.56193 0.79532 0.89176 1.05745 1.68231 1.92366 2.66793 3.01131 3.24437 3.29464 3.30617 3.32669 3.40067 3.45492 3.94793 4.06151 4.31695 4.44755 4.57292 4.60797 4.62565 4.79699 4.87160 4.94693 5.07078 5.15241 5.16906 5.23598 5.41816 5.50883 5.59521 5.68733 5.73080 5.80234 5.93891 6.00544 6.02089 6.11302 6.16026 6.20380 6.46010 6.52588 7.05197 7.08857 7.20130 7.65856 7.90782 8.70706 8.87995 9.33862 10.89405 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.003138 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.843048 B = 8920.394196 C =10607.303543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.075 3.925 10 S -0.039 6.039 11 C 0.195 3.805 12 N -0.284 5.284 13 N -0.251 5.251 14 C 0.195 3.805 15 C -0.039 4.039 16 C -0.065 4.065 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.156 4.156 20 C 0.138 3.862 21 F -0.122 7.122 22 N -0.425 5.425 23 C 0.119 3.881 24 C -0.098 4.098 25 C -0.107 4.107 26 C -0.107 4.107 27 C -0.105 4.105 28 C -0.097 4.097 29 H 0.268 0.732 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 -25.982 -0.849 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.085 0.915 9 C -0.072 4.072 10 S 0.191 5.809 11 C -0.176 4.176 12 N -0.128 5.128 13 N -0.091 5.091 14 C -0.070 4.070 15 C -0.042 4.042 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.099 4.099 19 C -0.175 4.175 20 C 0.117 3.883 21 F -0.100 7.100 22 N -0.118 5.118 23 C 0.029 3.971 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.116 4.116 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.141 -25.116 -0.807 26.414 hybrid contribution 0.029 0.595 0.179 0.622 sum 8.170 -24.521 -0.628 25.854 Atomic orbital electron populations 1.69983 1.06102 1.27555 1.47997 1.24939 0.94966 0.99159 0.94341 0.86340 0.79681 0.82150 0.78402 1.20241 1.20820 1.19521 1.20557 0.93240 0.88501 1.54442 0.91463 1.21393 0.93935 0.89241 1.02676 1.85634 1.10912 0.93905 1.90460 1.27786 0.97741 0.88042 1.03992 1.74898 1.03052 1.14094 1.20758 1.74389 1.24511 0.94932 1.15227 1.22570 0.81503 0.93659 1.09307 1.17459 1.00485 0.87075 0.99230 1.21119 0.97476 0.93607 0.96300 1.21076 0.99589 0.94079 1.00043 1.21133 0.94514 1.00223 0.93997 1.21108 1.02911 0.91152 1.02312 1.17680 0.92224 0.88871 0.89540 1.91585 1.75480 1.75762 1.67150 1.43903 1.05154 1.05200 1.57535 1.17556 0.83413 1.00292 0.95871 1.21167 0.96692 0.97378 0.96531 1.21032 0.92994 0.99678 0.98903 1.21306 0.99818 0.98084 0.93281 1.21073 0.94925 0.97383 0.99020 1.21256 0.94207 0.98940 0.97234 0.92222 0.92778 0.92795 0.85154 0.84789 0.84624 0.84069 0.85590 0.85023 0.85231 0.84803 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 3 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.63 9.13 -34.44 -0.31 -14.94 16 8 H 0.07 1.80 7.71 -52.48 -0.40 1.40 16 9 C 0.07 2.00 4.99 36.01 0.18 2.18 16 10 S -0.04 -0.86 21.92 -107.50 -2.36 -3.22 16 11 C 0.20 4.20 8.02 -87.94 -0.71 3.50 16 12 N -0.28 -6.82 11.58 30.76 0.36 -6.47 16 13 N -0.25 -5.54 12.02 32.62 0.39 -5.14 16 14 C 0.20 3.56 7.12 -153.56 -1.09 2.47 16 15 C -0.04 -0.55 5.68 -104.92 -0.60 -1.15 16 16 C -0.07 -0.70 9.14 -39.19 -0.36 -1.06 16 17 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 18 C -0.08 -0.58 10.04 -39.50 -0.40 -0.97 16 19 C -0.16 -1.45 10.01 -39.57 -0.40 -1.85 16 20 C 0.14 1.84 7.28 -39.01 -0.28 1.55 16 21 F -0.12 -1.94 16.66 2.25 0.04 -1.91 16 22 N -0.43 -7.60 2.86 -58.15 -0.17 -7.76 16 23 C 0.12 1.69 4.42 -83.60 -0.37 1.32 16 24 C -0.10 -1.18 9.95 -39.40 -0.39 -1.57 16 25 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 26 C -0.11 -0.85 10.04 -39.55 -0.40 -1.25 16 27 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 28 C -0.10 -1.18 9.95 -39.41 -0.39 -1.57 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 30 H 0.05 1.55 8.14 -51.92 -0.42 1.12 16 31 H 0.05 1.55 8.14 -51.91 -0.42 1.13 16 32 H 0.13 1.36 7.71 -52.48 -0.40 0.95 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -33.79 375.00 -11.35 -45.14 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.17 Total: -1.58 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -6.80 Total: -15.57 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 1.32 Total: -44.58 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.36 Total: -3.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.79 -11.35 -45.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006830944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.970 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds