Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41826 * 126.10779 * 2 1 4 4 C 1.41785 * 126.81337 * 359.97438 * 3 2 1 5 5 O 1.21856 * 120.00144 * 85.10945 * 4 3 2 6 6 C 1.47686 * 119.99566 * 265.10879 * 4 3 2 7 7 C 1.39872 * 120.18553 * 5.13266 * 6 4 3 8 8 F 1.35107 * 120.09625 * 0.02562 * 7 6 4 9 9 C 1.38214 * 119.81059 * 179.70081 * 7 6 4 10 10 C 1.38314 * 120.18113 * 0.60025 * 9 7 6 11 11 C 1.38315 * 120.38052 * 359.67799 * 10 9 7 12 12 C 1.38211 * 120.18019 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.09280 * 180.02562 * 12 11 10 14 14 C 1.40849 * 106.36893 * 180.02562 * 3 2 1 15 15 C 1.40144 * 132.34727 * 180.02562 * 14 3 2 16 16 C 1.36453 * 119.32541 * 180.02562 * 15 14 3 17 17 C 1.40223 * 119.43539 * 359.97438 * 16 15 14 18 18 C 1.35084 * 120.36122 * 0.02562 * 17 16 15 19 19 N 1.36637 * 120.75520 * 359.97438 * 18 17 16 20 20 C 1.34445 * 126.11458 * 180.02562 * 2 1 3 21 21 C 1.50704 * 125.16916 * 0.02562 * 20 2 1 22 22 C 1.50694 * 109.47180 * 269.97445 * 21 20 2 23 23 H 1.08004 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00173 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00286 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00071 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46769 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47080 * 120.00278 * 26 24 22 29 29 H 1.48503 * 109.46824 * 240.00178 * 26 24 22 30 30 H 1.08999 * 109.47168 * 89.97904 * 1 2 3 31 31 H 1.09003 * 109.47119 * 209.97122 * 1 2 3 32 32 H 1.08998 * 109.47322 * 329.97520 * 1 2 3 33 33 H 1.08000 * 119.90546 * 180.27712 * 9 7 6 34 34 H 1.08008 * 119.81201 * 179.69381 * 10 9 7 35 35 H 1.07995 * 119.90870 * 180.02562 * 11 10 9 36 36 H 1.08002 * 120.33639 * 0.02562 * 15 14 3 37 37 H 1.07994 * 120.28340 * 179.97438 * 16 15 14 38 38 H 1.08000 * 119.82455 * 180.27502 * 17 16 15 39 39 H 1.07998 * 119.62507 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47314 * 29.98052 * 21 20 2 41 41 H 1.09001 * 109.46729 * 149.97995 * 21 20 2 42 42 H 0.96991 * 120.00463 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3428 1.1458 0.0000 4 6 1.9264 2.5011 -0.0005 5 8 1.6611 3.0574 1.0507 6 6 1.8142 3.2386 -1.2751 7 6 2.0134 2.5761 -2.4908 8 9 2.3089 1.2578 -2.5035 9 6 1.9005 3.2725 -3.6794 10 6 1.6037 4.6234 -3.6683 11 6 1.4109 5.2874 -2.4704 12 6 1.5142 4.6048 -1.2731 13 9 1.3250 5.2551 -0.1041 14 6 3.6685 0.6701 -0.0006 15 6 4.9069 1.3262 -0.0004 16 6 6.0544 0.5878 -0.0017 17 6 5.9731 -0.8120 -0.0026 18 6 4.7698 -1.4261 -0.0028 19 7 3.6137 -0.6978 -0.0015 20 6 2.2994 -1.0861 -0.0005 21 6 1.8158 -2.5135 -0.0017 22 6 1.6547 -2.9904 1.4187 23 1 1.8796 -2.3263 2.2402 24 6 1.2193 -4.2743 1.6696 25 7 0.9450 -5.0830 0.6693 26 14 1.0189 -4.8653 3.4303 27 1 1.3891 -3.7720 4.3645 28 1 -0.3944 -5.2574 3.6630 29 1 1.9022 -6.0362 3.6629 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 2.0495 2.7615 -4.6191 34 1 1.5217 5.1628 -4.6005 35 1 1.1791 6.3422 -2.4707 36 1 4.9526 2.4053 0.0007 37 1 7.0170 1.0774 -0.0020 38 1 6.8773 -1.4026 0.0009 39 1 4.7210 -2.5049 -0.0031 40 1 0.8563 -2.5716 -0.5156 41 1 2.5422 -3.1427 -0.5160 42 1 0.6390 -5.9863 0.8458 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006848428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = -24.441506 kcal Electronic energy + Delta-G solvation = -31495.127453 eV Core-core repulsion = 27042.404265 eV Total energy + Delta-G solvation = -4452.723188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.112 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.09798 -48.97942 -41.81780 -39.44914 -38.13207 -36.48371 -33.44376 -32.81707 -31.56148 -31.20641 -30.59036 -29.31817 -27.44554 -26.28684 -24.72049 -23.51403 -23.06863 -22.43218 -21.64309 -19.63363 -19.15173 -18.19126 -17.34353 -16.86088 -16.54552 -16.32548 -16.07205 -15.82008 -15.70873 -15.28832 -15.23885 -14.99313 -14.65988 -14.54892 -14.51501 -14.40870 -14.00551 -13.38433 -12.92692 -12.59885 -12.54984 -12.29204 -12.22744 -12.15605 -12.12445 -11.96261 -11.72064 -11.35842 -11.30946 -11.06773 -10.76606 -10.67702 -10.59712 -9.91706 -9.81103 -9.61345 -9.44984 -9.31237 -8.98528 -8.51852 -7.74992 -6.67640 -6.09963 -4.17374 0.28417 0.74678 1.18121 1.77670 2.28229 3.19131 3.25195 3.27928 3.32635 3.35182 3.41746 3.64390 3.85954 4.14917 4.16373 4.39207 4.40610 4.48534 4.80611 4.94894 5.08310 5.21808 5.28745 5.31122 5.35486 5.46065 5.51996 5.60675 5.73840 5.82337 5.82445 5.96636 6.06157 6.14675 6.23704 6.28807 6.36642 6.46604 6.47945 6.60577 6.68251 6.93037 7.15666 7.35345 7.40637 7.63992 7.74583 7.83227 7.90638 8.21589 8.87941 9.48067 10.96262 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003523 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.283536 B = 7944.913941 C = 8603.424782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.079 4.079 3 C -0.268 4.268 4 C 0.493 3.507 5 O -0.437 6.437 6 C -0.237 4.237 7 C 0.192 3.808 8 F -0.101 7.101 9 C -0.186 4.186 10 C -0.034 4.034 11 C -0.187 4.187 12 C 0.181 3.819 13 F -0.111 7.111 14 C 0.077 3.923 15 C -0.105 4.105 16 C -0.116 4.116 17 C -0.173 4.173 18 C 0.086 3.914 19 N -0.332 5.332 20 C 0.041 3.959 21 C 0.082 3.918 22 C -0.515 4.515 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.892 5.892 26 Si 0.893 3.107 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.283 1.283 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.165 0.835 40 H 0.047 0.953 41 H 0.025 0.975 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 17.222 -11.136 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.276 4.276 4 C 0.369 3.631 5 O -0.311 6.311 6 C -0.240 4.240 7 C 0.172 3.828 8 F -0.079 7.079 9 C -0.205 4.205 10 C -0.053 4.053 11 C -0.206 4.206 12 C 0.161 3.839 13 F -0.089 7.089 14 C -0.029 4.029 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.194 4.194 18 C -0.036 4.036 19 N 0.005 4.995 20 C -0.067 4.067 21 C 0.044 3.956 22 C -0.553 4.553 23 H 0.076 0.924 24 C -0.140 4.140 25 N -0.531 5.531 26 Si 0.721 3.279 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.209 1.209 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.514 17.080 -10.553 20.821 hybrid contribution 0.047 -0.576 1.096 1.239 sum 5.561 16.504 -9.457 19.817 Atomic orbital electron populations 1.20234 0.89637 1.02913 1.01335 1.18928 0.95139 0.89228 1.04880 1.18369 0.92210 0.93619 1.23409 1.17914 0.72915 0.86123 0.86117 1.90712 1.36782 1.69887 1.33725 1.20909 1.12398 0.94174 0.96523 1.17575 0.93906 0.78828 0.92502 1.91698 1.89001 1.30188 1.97000 1.21242 1.06319 0.95443 0.97506 1.21003 0.93138 0.93128 0.97984 1.21163 1.06978 1.01748 0.90735 1.17586 0.95550 0.88692 0.82074 1.91608 1.91316 1.80305 1.45704 1.18168 0.93197 0.82701 1.08842 1.20315 0.89862 0.99652 1.02598 1.20852 0.97938 0.93657 1.01272 1.20560 0.96446 0.95064 1.07308 1.21822 0.83958 0.98584 0.99201 1.41383 1.06054 1.06013 1.46039 1.21187 0.78546 0.99019 1.07938 1.17936 0.97003 0.82512 0.98128 1.21103 1.45242 0.97526 0.91440 0.92389 1.24970 0.95136 0.96616 0.97263 1.69948 1.45328 1.07206 1.30626 0.86501 0.77914 0.78719 0.84788 1.19630 1.20777 1.20945 0.92155 0.89786 0.92778 0.83532 0.83638 0.83642 0.85372 0.85429 0.84166 0.81768 0.93472 0.95669 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.74 36.01 0.35 -1.25 16 2 C -0.08 -1.67 5.71 -104.59 -0.60 -2.26 16 3 C -0.27 -5.29 3.47 -106.18 -0.37 -5.66 16 4 C 0.49 9.12 6.43 -34.37 -0.22 8.90 16 5 O -0.44 -9.11 16.11 5.05 0.08 -9.02 16 6 C -0.24 -3.52 5.89 -104.81 -0.62 -4.14 16 7 C 0.19 2.53 7.24 -38.98 -0.28 2.25 16 8 F -0.10 -1.60 14.03 2.25 0.03 -1.57 16 9 C -0.19 -1.71 10.01 -39.56 -0.40 -2.11 16 10 C -0.03 -0.25 10.03 -39.53 -0.40 -0.64 16 11 C -0.19 -1.64 10.01 -39.56 -0.40 -2.03 16 12 C 0.18 2.32 7.28 -38.98 -0.28 2.04 16 13 F -0.11 -1.64 15.57 2.25 0.04 -1.60 16 14 C 0.08 1.46 6.27 -83.90 -0.53 0.94 16 15 C -0.11 -1.66 10.04 -39.51 -0.40 -2.06 16 16 C -0.12 -1.58 10.09 -39.48 -0.40 -1.98 16 17 C -0.17 -2.43 9.98 -39.96 -0.40 -2.82 16 18 C 0.09 1.49 10.65 -16.53 -0.18 1.31 16 19 N -0.33 -6.67 2.92 -56.60 -0.17 -6.84 16 20 C 0.04 0.91 6.10 -81.60 -0.50 0.42 16 21 C 0.08 2.03 4.85 -29.04 -0.14 1.88 16 22 C -0.51 -13.99 9.09 -34.44 -0.31 -14.30 16 23 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 26 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.70 7.67 -51.93 -0.40 1.31 16 32 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.17 2.74 7.79 -52.49 -0.41 2.33 16 40 H 0.05 1.22 7.64 -51.93 -0.40 0.82 16 41 H 0.03 0.64 7.81 -51.93 -0.41 0.24 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -32.62 372.58 -9.37 -41.99 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.53 Total: -0.36 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -6.15 Total: -19.91 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.57 Total: -31.38 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.07 Total: -3.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.62 -9.37 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006848428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.546 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds