Wall clock time and date at job start Tue Mar 31 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99993 * 2 1 4 4 N 1.46500 * 109.46971 * 127.01374 * 3 2 1 5 5 C 1.36558 * 127.17347 * 83.57493 * 4 3 2 6 6 S 1.76195 * 126.38325 * 359.97438 * 5 4 3 7 7 C 1.81000 * 100.00299 * 179.71386 * 6 5 4 8 8 C 1.52994 * 109.47579 * 180.02562 * 7 6 5 9 9 H 1.09009 * 109.46979 * 55.00064 * 8 7 6 10 10 C 1.47204 * 109.47264 * 295.00521 * 8 7 6 11 11 N 6.30340 * 144.41837 * 195.86320 * 2 1 3 12 12 C 1.52995 * 109.47535 * 175.00234 * 8 7 6 13 13 C 1.50700 * 109.47491 * 185.00493 * 12 8 7 14 14 H 1.08000 * 119.99947 * 359.97438 * 13 12 8 15 15 C 1.37881 * 120.00131 * 180.02562 * 13 12 8 16 16 N 1.31513 * 119.99966 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99982 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47055 * 90.00256 * 17 15 13 19 19 H 1.48497 * 109.46841 * 209.99871 * 17 15 13 20 20 H 1.48500 * 109.47081 * 329.99946 * 17 15 13 21 21 N 1.31448 * 107.23655 * 179.73397 * 5 4 3 22 22 N 1.28512 * 110.07957 * 0.26347 * 21 5 4 23 23 C 1.31275 * 109.95736 * 359.97438 * 22 21 5 24 24 C 1.47841 * 126.46308 * 180.02562 * 23 22 21 25 25 C 1.39577 * 120.14623 * 33.19922 * 24 23 22 26 26 C 1.37952 * 119.85116 * 179.74097 * 25 24 23 27 27 C 1.38355 * 120.14576 * 0.51346 * 26 25 24 28 28 C 1.38359 * 120.29236 * 359.76623 * 27 26 25 29 29 C 1.37951 * 120.14357 * 359.97438 * 28 27 26 30 30 H 1.07995 * 120.00066 * 356.98363 * 1 2 3 31 31 H 1.08005 * 119.99688 * 176.98615 * 1 2 3 32 32 H 1.08000 * 120.00202 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47149 * 7.01472 * 3 2 1 34 34 H 1.09001 * 109.47404 * 247.01497 * 3 2 1 35 35 H 1.09007 * 109.47222 * 300.00632 * 7 6 5 36 36 H 1.09000 * 109.46809 * 60.00025 * 7 6 5 37 37 H 1.09007 * 109.47303 * 305.00288 * 12 8 7 38 38 H 1.09000 * 109.47412 * 64.99721 * 12 8 7 39 39 H 0.96994 * 120.00449 * 179.97438 * 16 15 13 40 40 H 1.08004 * 120.07167 * 0.02562 * 25 24 23 41 41 H 1.08005 * 119.92962 * 180.27637 * 26 25 24 42 42 H 1.08005 * 119.85282 * 179.73647 * 27 26 25 43 43 H 1.08000 * 119.92819 * 179.97438 * 28 27 26 44 44 H 1.07998 * 120.07301 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0278 1.3122 1.1029 5 6 4.2824 0.7729 1.1056 6 16 5.0588 -0.0739 -0.2303 7 6 6.6560 -0.4605 0.5284 8 6 7.5273 -1.2185 -0.4751 9 1 7.6117 -0.6382 -1.3940 10 6 6.9119 -2.5221 -0.7729 11 7 6.4365 -3.5280 -1.0025 12 6 8.9197 -1.4360 0.1205 13 6 9.8140 -2.0724 -0.9121 14 1 9.4277 -2.2995 -1.8948 15 6 11.1250 -2.3658 -0.6020 16 7 11.9053 -2.9217 -1.5030 17 14 11.7929 -1.9738 1.0979 18 1 11.5806 -3.1389 1.9939 19 1 13.2455 -1.6804 1.0034 20 1 11.0836 -0.7907 1.6477 21 7 4.8048 1.0077 2.2887 22 7 3.9659 1.6478 3.0222 23 6 2.8570 1.8613 2.3528 24 6 1.6540 2.5645 2.8468 25 6 1.7811 3.6215 3.7495 26 6 0.6548 4.2768 4.2024 27 6 -0.5993 3.8815 3.7720 28 6 -0.7326 2.8308 2.8819 29 6 0.3859 2.1705 2.4171 30 1 -0.5400 0.9340 0.0492 31 1 -0.5400 -0.9341 -0.0492 32 1 1.8501 -0.9353 -0.0004 33 1 1.3619 2.1297 0.1255 34 1 2.5928 1.4191 -0.9461 35 1 7.1551 0.4649 0.8162 36 1 6.4982 -1.0783 1.4125 37 1 9.3395 -0.4766 0.4229 38 1 8.8451 -2.0900 0.9893 39 1 12.8277 -3.1278 -1.2850 40 1 2.7593 3.9286 4.0890 41 1 0.7519 5.0978 4.8974 42 1 -1.4782 4.3952 4.1330 43 1 -1.7144 2.5268 2.5501 44 1 0.2806 1.3507 1.7220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007204999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:51 Heat of formation + Delta-G solvation = 147.004638 kcal Electronic energy + Delta-G solvation = -26926.547756 eV Core-core repulsion = 23165.110831 eV Total energy + Delta-G solvation = -3761.436925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.02899 -39.43432 -36.98513 -36.72607 -34.11436 -33.29072 -32.77798 -32.30613 -31.40417 -29.65449 -28.36887 -27.34498 -24.52913 -23.73195 -23.51345 -22.27647 -21.59655 -21.14901 -20.69982 -18.36078 -17.43697 -17.05999 -16.96513 -16.56046 -16.52060 -16.00525 -15.39453 -15.18120 -14.84997 -14.33736 -14.20150 -14.11081 -13.91368 -13.80067 -13.40483 -13.13655 -12.99218 -12.85895 -12.57934 -12.17595 -12.10886 -11.94008 -11.83348 -11.63901 -11.53494 -11.46003 -11.21530 -10.93536 -10.60007 -10.53734 -10.44237 -10.32147 -10.14197 -9.99550 -9.88166 -9.43952 -9.40199 -9.13150 -8.64705 -7.71839 -6.14172 -4.16121 0.42298 0.89033 0.91412 1.42956 1.59613 1.97852 2.41105 2.60435 3.27512 3.34207 3.35407 3.36544 3.40254 3.47847 3.81479 4.04969 4.18675 4.36486 4.38644 4.47722 4.48331 4.59561 4.65648 4.81701 4.85269 4.94005 5.00343 5.09484 5.20437 5.24840 5.29582 5.32559 5.41599 5.57259 5.64627 5.73099 5.89786 5.93089 5.96544 6.01847 6.01993 6.04429 6.09599 6.37730 6.46611 6.87920 7.01238 7.56072 8.22419 8.35918 8.40142 8.87537 9.44910 10.98445 Molecular weight = 354.12amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002232 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.391925 B =12542.805057 C =13808.282315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C 0.129 3.871 4 N -0.456 5.456 5 C 0.170 3.830 6 S -0.003 6.003 7 C -0.094 4.094 8 C 0.033 3.967 9 H 0.119 0.881 10 C 0.231 3.769 11 N -0.448 5.448 12 C 0.001 3.999 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.260 1.260 21 N -0.286 5.286 22 N -0.265 5.265 23 C 0.216 3.784 24 C -0.013 4.013 25 C -0.075 4.075 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.119 4.119 29 C -0.117 4.117 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.408 16.461 6.669 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.199 4.199 3 C 0.007 3.993 4 N -0.149 5.149 5 C -0.204 4.204 6 S 0.228 5.772 7 C -0.244 4.244 8 C 0.010 3.990 9 H 0.136 0.864 10 C -0.087 4.087 11 N -0.124 5.124 12 C -0.039 4.039 13 C -0.569 4.569 14 H 0.094 0.906 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.185 1.185 21 N -0.131 5.131 22 N -0.105 5.105 23 C -0.051 4.051 24 C -0.015 4.015 25 C -0.095 4.095 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.137 4.137 29 C -0.137 4.137 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.305 14.628 6.291 32.476 hybrid contribution 0.262 0.638 1.082 1.283 sum -28.043 15.265 7.373 32.769 Atomic orbital electron populations 1.24033 0.95403 1.02935 0.97761 1.23190 0.96469 0.98303 1.01902 1.21210 0.91200 0.97918 0.88993 1.46496 1.12646 1.43115 1.12620 1.26926 0.87238 1.04371 1.01839 1.85713 1.15262 1.65641 1.10619 1.23911 0.92567 1.05831 1.02122 1.18781 0.95255 0.85396 0.99604 0.86362 1.28842 0.92046 0.94808 0.92993 1.81041 1.11169 1.11264 1.08935 1.19691 0.88154 0.98749 0.97333 1.20958 0.95209 1.41164 0.99582 0.90647 1.24962 0.96783 0.94172 0.97013 1.69892 1.07120 1.41930 1.34256 0.86841 0.78471 0.79651 0.84806 1.20159 1.21165 1.18465 1.74772 1.23301 1.15727 0.99261 1.74329 0.98262 1.13752 1.24185 1.22918 0.97229 1.02066 0.82864 1.17465 0.88371 0.96296 0.99396 1.21259 0.99857 0.93491 0.94920 1.21150 0.92099 1.00137 1.00167 1.21343 0.97694 0.96733 0.96848 1.21051 0.98314 0.96318 0.97972 1.21642 0.91432 1.00114 1.00505 0.87762 0.86988 0.85681 0.87588 0.87021 0.86351 0.87726 0.93795 0.95603 0.92456 0.84751 0.85164 0.85567 0.85412 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 12.60 29.01 0.37 -0.49 16 2 C -0.18 -1.33 9.35 -36.03 -0.34 -1.67 16 3 C 0.13 1.01 5.59 -5.20 -0.03 0.99 16 4 N -0.46 -5.32 2.82 -115.36 -0.33 -5.65 16 5 C 0.17 2.37 8.07 -88.18 -0.71 1.66 16 6 S 0.00 -0.03 21.35 -107.50 -2.30 -2.33 16 7 C -0.09 -1.36 4.65 37.15 0.17 -1.18 16 8 C 0.03 0.57 2.21 -93.41 -0.21 0.36 16 9 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16 10 C 0.23 4.52 13.31 -20.76 -0.28 4.25 16 11 N -0.45 -9.60 18.54 42.15 0.78 -8.82 16 12 C 0.00 0.02 3.49 -27.89 -0.10 -0.08 16 13 C -0.53 -13.97 9.15 -34.44 -0.32 -14.28 16 14 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 17 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 21 N -0.29 -4.66 11.59 30.71 0.36 -4.31 16 22 N -0.26 -4.17 12.18 32.60 0.40 -3.77 16 23 C 0.22 2.76 7.55 -153.74 -1.16 1.60 16 24 C -0.01 -0.13 5.73 -104.97 -0.60 -0.73 16 25 C -0.08 -0.67 9.76 -39.19 -0.38 -1.05 16 26 C -0.12 -0.77 10.03 -39.64 -0.40 -1.17 16 27 C -0.11 -0.61 10.04 -39.49 -0.40 -1.00 16 28 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 29 C -0.12 -0.91 8.40 -39.19 -0.33 -1.24 16 30 H 0.10 0.37 7.10 -52.49 -0.37 -0.01 16 31 H 0.11 0.50 8.06 -52.48 -0.42 0.08 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.11 0.64 6.22 -51.93 -0.32 0.32 16 34 H 0.11 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.12 1.58 8.14 -51.91 -0.42 1.15 16 36 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 37 H 0.04 0.87 7.20 -51.92 -0.37 0.49 16 38 H 0.03 0.54 7.57 -51.93 -0.39 0.15 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 41 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 43 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.13 0.91 3.14 -52.49 -0.16 0.74 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -33.84 392.29 -9.70 -43.53 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.43 Total: -1.39 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -5.20 Total: -13.20 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 1.98 Total: -48.40 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.30 Total: -2.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.84 -9.70 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007204999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.539 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds