Wall clock time and date at job start Tue Mar 31 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00114 * 2 1 4 4 H 1.48500 * 109.46764 * 240.00147 * 3 2 1 5 5 H 1.48502 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47340 * 120.00218 * 3 2 1 7 7 C 1.37883 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99820 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46701 * 180.02562 * 9 7 2 11 11 S 1.81000 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.76198 * 100.00052 * 179.97438 * 11 10 9 13 13 N 1.31263 * 126.38157 * 0.16804 * 12 11 10 14 14 N 1.28495 * 110.13249 * 180.24269 * 13 12 11 15 15 C 1.31342 * 109.98495 * 359.75199 * 14 13 12 16 16 C 1.47679 * 126.48198 * 180.02562 * 15 14 13 17 17 C 1.35800 * 126.67952 * 186.47175 * 16 15 14 18 18 N 1.36494 * 109.71121 * 179.89121 * 17 16 15 19 19 H 0.96995 * 124.90080 * 180.16151 * 18 17 16 20 20 C 1.37810 * 110.19689 * 0.38571 * 18 17 16 21 21 C 1.39171 * 133.27789 * 179.80048 * 20 18 17 22 22 C 1.37756 * 119.78550 * 180.02562 * 21 20 18 23 23 C 1.38785 * 120.63920 * 359.95539 * 22 21 20 24 24 C 1.36712 * 120.47164 * 0.02562 * 23 22 21 25 25 C 1.39363 * 119.79140 * 0.02562 * 24 23 22 26 26 N 1.36796 * 126.38381 * 179.97438 * 12 11 10 27 27 C 1.46502 * 127.19534 * 0.04078 * 26 12 11 28 28 C 1.53003 * 117.49928 * 52.73479 * 27 26 12 29 29 C 1.53001 * 60.03319 * 252.47688 * 28 27 26 30 30 H 0.97001 * 120.00170 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47608 * 59.99828 * 9 7 2 32 32 H 1.09001 * 109.46915 * 299.99480 * 9 7 2 33 33 H 1.08997 * 109.47302 * 59.99552 * 10 9 7 34 34 H 1.09001 * 109.46940 * 299.99377 * 10 9 7 35 35 H 1.08003 * 125.14167 * 0.03667 * 17 16 15 36 36 H 1.08006 * 120.10555 * 0.03464 * 21 20 18 37 37 H 1.08006 * 119.68030 * 179.97438 * 22 21 20 38 38 H 1.07996 * 119.76520 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.09998 * 179.97438 * 24 23 22 40 40 H 1.08993 * 115.55183 * 198.40518 * 27 26 12 41 41 H 1.09005 * 117.49564 * 359.97438 * 28 27 26 42 42 H 1.08997 * 117.50118 * 144.97252 * 28 27 26 43 43 H 1.09001 * 117.50014 * 107.49557 * 29 28 27 44 44 H 1.08998 * 117.50005 * 252.52333 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 16 1.3401 -5.2296 0.0026 12 6 2.6899 -6.3623 0.0032 13 7 3.9656 -6.0533 0.0062 14 7 4.6795 -7.1216 0.0007 15 6 3.9025 -8.1806 -0.0009 16 6 4.3405 -9.5910 -0.0064 17 6 3.5473 -10.6862 -0.1308 18 7 4.3129 -11.8156 -0.0937 19 1 3.9710 -12.7205 -0.1660 20 6 5.6411 -11.4851 0.0663 21 6 6.8066 -12.2391 0.1667 22 6 8.0196 -11.6060 0.3261 23 6 8.0922 -10.2214 0.3869 24 6 6.9590 -9.4628 0.2899 25 6 5.7217 -10.0838 0.1293 26 7 2.6035 -7.7275 0.0044 27 6 1.3829 -8.5377 0.0046 28 6 0.3404 -8.2448 -1.0763 29 6 0.0712 -7.8410 0.3747 30 1 -0.4850 0.8400 0.0004 31 1 0.6245 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8904 33 1 2.8712 -3.6040 0.8922 34 1 2.8725 -3.6048 -0.8878 35 1 2.4735 -10.6664 -0.2445 36 1 6.7601 -13.3171 0.1196 37 1 8.9229 -12.1928 0.4043 38 1 9.0507 -9.7397 0.5118 39 1 7.0224 -8.3858 0.3384 40 1 1.5071 -9.5748 0.3160 41 1 0.5625 -7.4489 -1.7872 42 1 -0.2210 -9.0892 -1.4761 43 1 0.1162 -6.7795 0.6184 44 1 -0.6670 -8.4200 0.9296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007790470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:34 Heat of formation + Delta-G solvation = 163.548931 kcal Electronic energy + Delta-G solvation = -27266.198793 eV Core-core repulsion = 23505.479282 eV Total energy + Delta-G solvation = -3760.719511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.68192 -41.46141 -37.91135 -37.19144 -33.71465 -33.27454 -32.44899 -30.93948 -30.47028 -29.66930 -28.64222 -25.30931 -24.71209 -23.30666 -22.93611 -22.64641 -22.09986 -21.65175 -20.81686 -19.96524 -18.29531 -17.52826 -16.87511 -16.53209 -16.17147 -15.90048 -15.82755 -15.05109 -14.79387 -14.67191 -14.49500 -14.13466 -14.03172 -13.71379 -13.67398 -13.55758 -12.91444 -12.17247 -12.13714 -12.02081 -11.98981 -11.91370 -11.57173 -11.36257 -11.13582 -11.03759 -10.99196 -10.73087 -10.64532 -10.45199 -10.23360 -9.87987 -9.78166 -9.63569 -9.36884 -9.08971 -8.56963 -8.41236 -8.01881 -7.15223 -6.05882 -4.09423 0.70013 1.27024 1.40293 1.53894 2.36943 2.41638 2.65833 2.74511 3.18297 3.34564 3.37893 3.40118 3.42178 3.73318 4.01684 4.13389 4.25347 4.39514 4.44530 4.45808 4.50380 4.76587 4.89617 4.94819 5.23475 5.30342 5.30798 5.33493 5.34546 5.35638 5.53706 5.67453 5.79085 5.87994 5.91751 6.04630 6.07103 6.18585 6.25721 6.26966 6.39441 6.48855 6.74527 6.79243 6.85183 7.05345 7.50201 7.57085 7.90316 8.27572 8.81140 8.94971 9.54644 11.04986 Molecular weight = 354.12amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002278 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.227758 B =12286.802758 C =13986.436447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.037 3.963 10 C -0.089 4.089 11 S -0.022 6.022 12 C 0.170 3.830 13 N -0.284 5.284 14 N -0.274 5.274 15 C 0.254 3.746 16 C -0.091 4.091 17 C 0.068 3.932 18 N -0.584 5.584 19 H 0.420 0.580 20 C 0.095 3.905 21 C -0.134 4.134 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.055 4.055 25 C -0.075 4.075 26 N -0.441 5.441 27 C 0.042 3.958 28 C -0.172 4.172 29 C -0.175 4.175 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.176 0.824 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 -30.350 -0.103 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.079 0.921 9 C -0.002 4.002 10 C -0.237 4.237 11 S 0.209 5.791 12 C -0.203 4.203 13 N -0.128 5.128 14 N -0.115 5.115 15 C -0.012 4.012 16 C -0.101 4.101 17 C -0.064 4.064 18 N -0.187 5.187 19 H 0.257 0.743 20 C -0.011 4.011 21 C -0.155 4.155 22 C -0.113 4.113 23 C -0.165 4.165 24 C -0.073 4.073 25 C -0.080 4.080 26 N -0.134 5.134 27 C -0.063 4.063 28 C -0.210 4.210 29 C -0.214 4.214 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.192 0.808 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.145 0.855 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.859 -29.642 -0.108 30.038 hybrid contribution 0.336 -0.110 -0.034 0.355 sum 5.194 -29.753 -0.143 30.203 Atomic orbital electron populations 1.69949 1.06061 1.27019 1.50175 1.25002 0.94923 0.99333 0.94989 0.86551 0.79499 0.82545 0.78839 1.20071 1.21238 1.20059 1.21039 0.93232 0.89866 1.51587 0.92131 1.18957 0.93354 0.89534 0.98385 1.24129 1.02172 0.91692 1.05716 1.85490 1.03071 0.98638 1.91861 1.27098 1.00670 0.85269 1.07257 1.74706 0.98211 1.19957 1.19923 1.74297 1.25287 0.93711 1.18183 1.21849 0.79545 0.94224 1.05575 1.17269 0.92377 0.86361 1.14140 1.21974 0.96550 0.84595 1.03242 1.41561 1.04957 1.08340 1.63815 0.74258 1.18221 0.84706 0.93874 1.04319 1.19996 0.89867 0.98779 1.06818 1.20861 0.96565 0.94737 0.99184 1.20743 0.98458 0.93688 1.03609 1.20543 0.90069 1.01011 0.95688 1.18703 0.92249 0.91281 1.05777 1.45906 1.06221 1.04956 1.56364 1.22198 0.79917 0.95666 1.08483 1.23538 0.99715 1.04754 0.93004 1.23847 0.95359 1.03824 0.98337 0.92746 0.95512 0.95514 0.89743 0.89766 0.80762 0.86124 0.85634 0.85687 0.84622 0.83790 0.87029 0.86918 0.85484 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.81 16 10 C -0.09 -1.94 5.17 37.16 0.19 -1.74 16 11 S -0.02 -0.38 17.89 -107.50 -1.92 -2.31 16 12 C 0.17 3.07 7.90 -88.11 -0.70 2.37 16 13 N -0.28 -5.83 11.57 30.73 0.36 -5.47 16 14 N -0.27 -5.23 11.94 32.57 0.39 -4.84 16 15 C 0.25 4.04 7.97 -153.77 -1.23 2.81 16 16 C -0.09 -1.16 6.28 -103.24 -0.65 -1.80 16 17 C 0.07 0.57 10.95 -16.35 -0.18 0.39 16 18 N -0.58 -4.06 6.04 -10.38 -0.06 -4.13 16 19 H 0.42 1.33 8.96 -40.82 -0.37 0.96 16 20 C 0.09 0.92 7.26 -83.98 -0.61 0.31 16 21 C -0.13 -1.08 10.08 -39.41 -0.40 -1.48 16 22 C -0.09 -0.77 10.01 -39.56 -0.40 -1.17 16 23 C -0.15 -1.42 9.98 -39.93 -0.40 -1.82 16 24 C -0.05 -0.68 10.04 -39.71 -0.40 -1.08 16 25 C -0.07 -0.94 6.36 -104.95 -0.67 -1.61 16 26 N -0.44 -6.54 3.19 -106.98 -0.34 -6.88 16 27 C 0.04 0.42 6.24 -67.89 -0.42 0.00 16 28 C -0.17 -1.51 10.05 -26.73 -0.27 -1.78 16 29 C -0.18 -1.68 9.71 -26.69 -0.26 -1.94 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.87 8.14 -51.92 -0.42 1.45 16 34 H 0.08 1.86 8.14 -51.92 -0.42 1.44 16 35 H 0.18 0.90 5.24 -52.48 -0.27 0.62 16 36 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.85 7.77 -52.49 -0.41 1.44 16 40 H 0.14 0.95 5.12 -51.93 -0.27 0.68 16 41 H 0.11 1.24 7.98 -51.93 -0.41 0.82 16 42 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.13 1.59 4.32 -27.84 -0.12 1.47 16 44 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -34.97 380.80 -12.25 -47.22 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.20 Total: 0.63 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -6.93 Total: -20.98 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 1.08 Total: -46.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.92 Total: -2.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.97 -12.25 -47.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007790470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.769 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds