Wall clock time and date at job start Tue Mar 31 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47191 * 2 1 4 4 C 1.53004 * 109.47208 * 240.00477 * 2 1 3 5 5 C 1.52992 * 109.47446 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47084 * 59.99850 * 5 4 2 7 7 C 1.52998 * 109.47323 * 300.00148 * 6 5 4 8 8 C 1.52994 * 109.47269 * 120.00647 * 2 1 3 9 9 H 1.09000 * 109.47006 * 300.00094 * 8 2 1 10 10 N 1.46504 * 109.47337 * 59.99809 * 8 2 1 11 11 C 1.34772 * 120.00207 * 204.99882 * 10 8 2 12 12 O 1.21652 * 119.99896 * 0.02562 * 11 10 8 13 13 C 1.47122 * 120.00199 * 179.97438 * 11 10 8 14 14 C 1.43195 * 119.99836 * 0.02562 * 13 11 10 15 15 N 5.44414 * 77.17851 * 177.88347 * 2 1 3 16 16 C 1.37850 * 119.99688 * 179.72640 * 13 11 10 17 17 C 1.46386 * 119.99552 * 172.99751 * 16 13 11 18 18 C 1.40311 * 120.12183 * 331.57511 * 17 16 13 19 19 C 1.36530 * 119.87168 * 179.71706 * 18 17 16 20 20 C 1.39274 * 120.12518 * 0.56527 * 19 18 17 21 21 O 1.35507 * 119.87539 * 179.73392 * 20 19 18 22 22 C 1.34743 * 117.00031 * 185.92229 * 21 20 19 23 23 H 1.07998 * 120.00061 * 354.91984 * 22 21 20 24 24 C 1.38770 * 120.00058 * 174.90832 * 22 21 20 25 25 N 1.31471 * 120.00240 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00062 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47138 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47086 * 120.00374 * 26 24 22 29 29 H 1.48499 * 109.47466 * 240.00165 * 26 24 22 30 30 C 1.39266 * 120.24652 * 359.71196 * 20 19 18 31 31 C 1.36534 * 120.12760 * 0.02562 * 30 20 19 32 32 H 1.08994 * 109.46783 * 299.99230 * 1 2 3 33 33 H 1.09001 * 109.46885 * 59.99821 * 1 2 3 34 34 H 1.09005 * 109.46751 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47008 * 300.00164 * 4 2 1 36 36 H 1.09005 * 109.47039 * 59.99744 * 4 2 1 37 37 H 1.09000 * 109.47421 * 180.02562 * 5 4 2 38 38 H 1.09004 * 109.47256 * 300.00141 * 5 4 2 39 39 H 1.09005 * 109.47029 * 60.00552 * 6 5 4 40 40 H 1.09005 * 109.47434 * 179.97438 * 6 5 4 41 41 H 1.09004 * 109.47070 * 299.99743 * 7 6 5 42 42 H 1.08999 * 109.46933 * 179.97438 * 7 6 5 43 43 H 0.97001 * 119.99963 * 25.00409 * 10 8 2 44 44 H 1.07999 * 120.00379 * 352.99075 * 16 13 11 45 45 H 1.07998 * 120.05868 * 359.97438 * 18 17 16 46 46 H 1.08006 * 119.93737 * 180.27673 * 19 18 17 47 47 H 0.96998 * 120.00279 * 179.97438 * 25 24 22 48 48 H 1.08010 * 119.93857 * 179.97438 * 30 20 19 49 49 H 1.08004 * 120.06631 * 180.02562 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0805 -1.4416 -0.0005 7 6 3.5706 -0.7205 1.2488 8 6 2.0401 -0.7214 1.2491 9 1 1.6767 -0.2076 2.1391 10 7 1.5517 -2.1026 1.2490 11 6 1.4231 -2.7720 2.4117 12 8 1.7120 -2.2290 3.4613 13 6 0.9321 -4.1589 2.4116 14 6 0.5915 -4.7977 1.1762 15 7 0.3219 -5.3048 0.1960 16 6 0.8059 -4.8453 3.6004 17 6 0.1755 -6.1663 3.6193 18 6 -0.7950 -6.4971 2.6615 19 6 -1.3755 -7.7327 2.6804 20 6 -1.0145 -8.6598 3.6550 21 8 -1.5979 -9.8828 3.6722 22 6 -1.2979 -10.6891 4.7093 23 1 -0.5582 -10.3836 5.4344 24 6 -1.9398 -11.9118 4.8459 25 7 -2.8402 -12.2838 3.9631 26 14 -1.5246 -13.0292 6.2841 27 1 -0.4875 -12.3841 7.1288 28 1 -2.7457 -13.2666 7.0951 29 1 -1.0108 -14.3250 5.7720 30 6 -0.0560 -8.3349 4.6116 31 6 0.5349 -7.1041 4.5990 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6767 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.9333 -1.2340 -2.1400 38 1 3.9330 0.3072 -1.2498 39 1 3.7176 -2.4694 -0.0004 40 1 5.1706 -1.4416 -0.0010 41 1 3.9336 0.3074 1.2487 42 1 3.9340 -1.2344 2.1387 43 1 1.3210 -2.5354 0.4121 44 1 1.1722 -4.4086 4.5177 45 1 -1.0793 -5.7772 1.9084 46 1 -2.1195 -7.9901 1.9409 47 1 -3.2886 -13.1386 4.0583 48 1 0.2199 -9.0575 5.3654 49 1 1.2785 -6.8532 5.3411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008220694.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:18 Heat of formation + Delta-G solvation = -12.019751 kcal Electronic energy + Delta-G solvation = -30207.099476 eV Core-core repulsion = 26099.554208 eV Total energy + Delta-G solvation = -4107.545268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.55801 -39.48175 -38.49034 -37.35883 -36.15139 -33.81364 -33.28100 -32.81118 -32.50059 -30.65147 -30.36356 -28.57561 -26.57451 -25.88229 -24.04578 -22.87064 -22.30650 -21.75227 -21.28862 -20.90444 -19.26423 -18.59684 -18.36894 -17.30046 -16.07768 -15.76548 -15.49751 -15.22004 -14.96830 -14.83540 -14.58591 -14.42605 -14.24935 -14.10517 -13.97933 -13.85065 -13.57905 -13.24862 -13.08390 -12.94683 -12.89062 -12.48805 -12.38802 -12.25156 -12.12771 -11.98147 -11.94501 -11.82950 -11.69348 -11.24758 -11.20574 -11.19458 -10.84707 -10.80767 -10.62775 -10.61439 -10.28828 -9.96447 -9.68493 -9.50844 -9.14155 -8.96525 -8.56650 -7.29199 -6.81666 -4.33177 0.55315 2.08225 2.26473 2.80099 2.86539 2.95385 2.96440 3.02741 3.16185 3.69954 3.78350 4.19068 4.29027 4.33920 4.40339 4.44558 4.76596 4.78240 4.83286 4.87709 4.94725 5.09073 5.13430 5.15335 5.25072 5.29151 5.31964 5.38909 5.45655 5.48693 5.53215 5.65460 5.72955 5.77662 5.84362 5.86766 5.89155 5.92542 5.98616 6.04318 6.04962 6.11225 6.25374 6.37905 6.43666 6.64597 6.76668 6.99150 7.05377 7.12024 7.43787 7.49776 7.63989 7.71335 8.21983 8.61982 9.27860 10.33903 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.024473 B = 0.001837 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.843072 B =15234.961184 C =15595.253519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.130 4.130 8 C 0.153 3.847 9 H 0.091 0.909 10 N -0.722 5.722 11 C 0.584 3.416 12 O -0.545 6.545 13 C -0.210 4.210 14 C 0.264 3.736 15 N -0.438 5.438 16 C 0.123 3.877 17 C -0.233 4.233 18 C -0.033 4.033 19 C -0.197 4.197 20 C 0.174 3.826 21 O -0.150 6.150 22 C -0.391 4.391 23 H 0.102 0.898 24 C 0.042 3.958 25 N -0.841 5.841 26 Si 0.949 3.051 27 H -0.263 1.263 28 H -0.272 1.272 29 H -0.272 1.272 30 C -0.245 4.245 31 C -0.017 4.017 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.397 0.603 44 H 0.149 0.851 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.277 0.723 48 H 0.134 0.866 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 21.082 -4.575 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.169 4.169 8 C 0.048 3.952 9 H 0.109 0.891 10 N -0.374 5.374 11 C 0.373 3.627 12 O -0.424 6.424 13 C -0.218 4.218 14 C -0.048 4.048 15 N -0.116 5.116 16 C 0.100 3.900 17 C -0.234 4.234 18 C -0.052 4.052 19 C -0.216 4.216 20 C 0.115 3.885 21 O -0.049 6.049 22 C -0.466 4.466 23 H 0.119 0.881 24 C -0.166 4.166 25 N -0.472 5.472 26 Si 0.772 3.228 27 H -0.186 1.186 28 H -0.197 1.197 29 H -0.197 1.197 30 C -0.264 4.264 31 C -0.035 4.035 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.233 0.767 44 H 0.167 0.833 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.087 0.913 48 H 0.152 0.848 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.368 20.349 -5.569 23.083 hybrid contribution 0.141 -0.704 0.577 0.921 sum 9.509 19.645 -4.992 22.389 Atomic orbital electron populations 1.21837 0.94610 1.02321 1.01877 1.21430 0.96162 0.99896 0.94286 0.89734 1.21619 0.95816 1.00606 0.97489 1.21546 0.95340 1.00789 0.98031 1.21513 1.00209 0.99807 0.94266 1.21937 0.95205 1.01113 0.98647 1.20951 0.93572 0.82008 0.98669 0.89130 1.45962 1.67887 1.14605 1.08990 1.17560 0.76730 0.84754 0.83616 1.90786 1.51650 1.68930 1.31076 1.17813 1.20340 0.95621 0.87990 1.25466 0.92932 0.93646 0.92786 1.81288 1.10785 1.07633 1.11846 1.23037 0.81586 0.89633 0.95773 1.18437 1.06701 0.95195 1.03090 1.20888 0.93957 0.95346 0.94962 1.19897 1.06220 0.93323 1.02188 1.19705 0.90578 0.85368 0.92837 1.83868 1.58264 1.19562 1.43212 1.21658 1.23606 0.98355 1.02936 0.88052 1.25504 0.95130 0.96992 0.98973 1.70005 1.22105 1.21623 1.33512 0.85523 0.78964 0.79227 0.79087 1.18645 1.19715 1.19745 1.20865 1.02793 0.98913 1.03825 1.20749 0.95799 0.92404 0.94577 0.92325 0.92515 0.92468 0.92174 0.91576 0.92014 0.91905 0.91869 0.92023 0.91165 0.91042 0.76688 0.83338 0.86467 0.86052 0.91273 0.84820 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.04 37.16 0.34 -0.76 16 2 C -0.10 -0.69 2.51 -90.62 -0.23 -0.92 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.82 5.03 -26.73 -0.13 -0.95 16 5 C -0.12 -0.81 5.92 -26.74 -0.16 -0.96 16 6 C -0.12 -0.95 5.77 -26.73 -0.15 -1.10 16 7 C -0.13 -1.09 5.61 -26.70 -0.15 -1.24 16 8 C 0.15 1.35 2.23 -67.90 -0.15 1.20 16 9 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 10 N -0.72 -7.53 3.49 -54.95 -0.19 -7.73 16 11 C 0.58 7.51 7.71 -12.66 -0.10 7.41 16 12 O -0.55 -8.15 15.97 5.23 0.08 -8.06 16 13 C -0.21 -2.83 5.84 -104.51 -0.61 -3.44 16 14 C 0.26 3.92 10.46 -22.48 -0.24 3.68 16 15 N -0.44 -7.22 17.87 41.84 0.75 -6.47 16 16 C 0.12 1.66 9.46 -36.45 -0.34 1.31 16 17 C -0.23 -3.77 5.61 -105.07 -0.59 -4.36 16 18 C -0.03 -0.58 8.27 -39.42 -0.33 -0.91 16 19 C -0.20 -4.04 9.93 -39.81 -0.40 -4.44 16 20 C 0.17 3.90 6.66 -38.81 -0.26 3.64 16 21 O -0.15 -3.97 9.74 1.04 0.01 -3.96 16 22 C -0.39 -9.98 9.48 30.93 0.29 -9.69 16 23 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 24 C 0.04 1.06 5.50 -17.51 -0.10 0.96 16 25 N -0.84 -22.87 13.67 55.49 0.76 -22.11 16 26 Si 0.95 18.74 29.55 -169.99 -5.02 13.72 16 27 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 28 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 29 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 30 C -0.24 -4.79 9.10 -39.81 -0.36 -5.15 16 31 C -0.02 -0.27 9.75 -39.42 -0.38 -0.66 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 35 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.59 7.61 -51.93 -0.39 0.19 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.40 4.03 5.53 -40.82 -0.23 3.81 16 44 H 0.15 1.71 7.61 -52.49 -0.40 1.31 16 45 H 0.12 2.00 5.24 -52.49 -0.27 1.72 16 46 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 47 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.13 2.55 5.62 -52.48 -0.29 2.26 16 49 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -28.75 401.50 -8.38 -37.13 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.76 Total: 7.82 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -4.05 Total: -16.37 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 1.31 Total: -36.31 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.75 -8.38 -37.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008220694.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.108 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds