Wall clock time and date at job start Tue Mar 31 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46858 * 2 1 4 4 C 1.52994 * 109.47172 * 239.99820 * 2 1 3 5 5 C 1.53002 * 109.46860 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47203 * 60.00107 * 5 4 2 7 7 C 1.53003 * 109.47289 * 299.99817 * 6 5 4 8 8 C 1.53002 * 109.46692 * 119.99738 * 2 1 3 9 9 H 1.08996 * 109.47043 * 60.00218 * 8 2 1 10 10 N 1.46498 * 109.47343 * 300.00084 * 8 2 1 11 11 C 1.34774 * 120.00149 * 155.00053 * 10 8 2 12 12 O 1.21649 * 120.00003 * 0.02562 * 11 10 8 13 13 C 1.47118 * 120.00073 * 179.97438 * 11 10 8 14 14 C 1.43198 * 120.00212 * 0.02562 * 13 11 10 15 15 N 5.44421 * 77.17570 * 62.11963 * 2 1 3 16 16 C 1.37851 * 119.99868 * 179.97438 * 13 11 10 17 17 C 1.46388 * 119.99897 * 172.49910 * 16 13 11 18 18 C 1.40305 * 120.12128 * 326.61353 * 17 16 13 19 19 C 1.36537 * 119.87141 * 179.76289 * 18 17 16 20 20 C 1.39270 * 120.12732 * 0.49163 * 19 18 17 21 21 O 1.35500 * 119.87705 * 179.76117 * 20 19 18 22 22 C 1.34755 * 116.99966 * 187.23968 * 21 20 19 23 23 H 1.08006 * 119.99818 * 354.88809 * 22 21 20 24 24 C 1.38764 * 119.99954 * 174.88735 * 22 21 20 25 25 N 1.31479 * 119.99957 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00425 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46946 * 89.99903 * 26 24 22 28 28 H 1.48497 * 109.47429 * 210.00270 * 26 24 22 29 29 H 1.48506 * 109.46753 * 330.00311 * 26 24 22 30 30 C 1.39281 * 120.24259 * 359.78525 * 20 19 18 31 31 C 1.36532 * 120.12422 * 359.95250 * 30 20 19 32 32 H 1.08993 * 109.47455 * 300.00241 * 1 2 3 33 33 H 1.09004 * 109.46577 * 60.00059 * 1 2 3 34 34 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47376 * 299.99862 * 4 2 1 36 36 H 1.08997 * 109.47657 * 60.00410 * 4 2 1 37 37 H 1.09001 * 109.47127 * 180.02562 * 5 4 2 38 38 H 1.08996 * 109.47196 * 300.00039 * 5 4 2 39 39 H 1.09004 * 109.47312 * 60.00160 * 6 5 4 40 40 H 1.09007 * 109.47409 * 180.02562 * 6 5 4 41 41 H 1.09005 * 109.46720 * 300.00547 * 7 6 5 42 42 H 1.08994 * 109.47447 * 180.02562 * 7 6 5 43 43 H 0.97003 * 120.00233 * 334.99995 * 10 8 2 44 44 H 1.07996 * 120.00221 * 352.77826 * 16 13 11 45 45 H 1.08003 * 120.06402 * 0.02796 * 18 17 16 46 46 H 1.07998 * 119.93480 * 180.23391 * 19 18 17 47 47 H 0.97001 * 119.99786 * 180.02562 * 25 24 22 48 48 H 1.08003 * 119.93478 * 179.97438 * 30 20 19 49 49 H 1.08008 * 120.06033 * 180.02562 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0005 7 6 3.5695 -0.7221 1.2497 8 6 2.0400 -0.7212 1.2493 9 1 1.6766 -1.7488 1.2493 10 7 1.5516 -0.0306 2.4454 11 6 1.4228 -0.7029 3.6064 12 8 1.7125 -1.8831 3.6612 13 6 0.9329 -0.0092 4.8077 14 6 0.5923 1.3802 4.7434 15 7 0.3216 2.4824 4.6922 16 6 0.8007 -0.6970 5.9950 17 6 0.4722 0.0241 7.2260 18 6 0.9459 1.3297 7.4249 19 6 0.6325 1.9993 8.5727 20 6 -0.1473 1.3850 9.5496 21 8 -0.4513 2.0525 10.6890 22 6 -1.0791 1.3562 11.6569 23 1 -1.3911 0.3384 11.4742 24 6 -1.3249 1.9469 12.8883 25 7 -1.9370 1.2674 13.8329 26 14 -0.7848 3.7069 13.2045 27 1 -1.8770 4.6366 12.8195 28 1 -0.4743 3.8780 14.6466 29 1 0.4264 4.0053 12.3986 30 6 -0.6154 0.0870 9.3599 31 6 -0.3125 -0.5899 8.2136 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.9335 -1.2352 -2.1390 38 1 3.9337 0.3057 -1.2485 39 1 3.7159 -2.4709 0.0002 40 1 5.1696 -1.4433 0.0010 41 1 3.9332 0.3055 1.2498 42 1 3.9328 -1.2358 2.1397 43 1 1.3209 0.9106 2.4019 44 1 0.9438 -1.7672 6.0180 45 1 1.5537 1.8057 6.6696 46 1 0.9934 3.0057 8.7253 47 1 -2.1091 1.6804 14.6935 48 1 -1.2194 -0.3847 10.1209 49 1 -0.6763 -1.5963 8.0674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008220698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:27 Heat of formation + Delta-G solvation = -15.521379 kcal Electronic energy + Delta-G solvation = -29821.638978 eV Core-core repulsion = 25713.941868 eV Total energy + Delta-G solvation = -4107.697110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.43645 -39.59985 -38.61223 -37.46827 -36.25664 -34.39185 -33.33634 -32.81005 -32.63554 -30.75070 -30.19127 -28.69712 -26.64255 -25.85412 -24.05324 -22.84506 -22.32576 -21.62294 -21.07924 -20.74246 -20.36186 -18.39288 -18.25458 -17.55313 -16.64053 -15.55776 -15.35667 -15.24754 -14.97964 -14.79303 -14.73499 -14.54282 -14.34722 -14.20263 -13.94234 -13.88016 -13.63810 -13.29415 -13.13954 -13.02178 -12.78511 -12.71932 -12.56893 -12.49372 -12.27228 -12.13212 -11.93016 -11.76532 -11.55474 -11.37521 -11.24882 -11.06986 -10.94172 -10.91903 -10.82138 -10.52851 -10.35693 -10.00375 -9.72283 -9.54282 -9.20261 -9.02504 -8.64997 -7.43264 -6.73809 -4.35316 0.47704 1.97692 2.12352 2.71666 2.77844 3.04498 3.06382 3.09299 3.22312 3.69327 3.99251 4.08945 4.22431 4.24675 4.34119 4.47693 4.49875 4.70282 4.75349 4.82920 4.84354 5.03802 5.07449 5.10969 5.12235 5.19307 5.29443 5.34741 5.37703 5.38666 5.53228 5.64795 5.67386 5.74772 5.76570 5.80072 5.81352 5.82216 5.91695 5.93120 6.00299 6.09011 6.11456 6.27562 6.34895 6.53257 6.78749 6.90482 6.97995 7.28056 7.34918 7.49759 7.62968 7.70151 8.12848 8.58211 9.17752 10.31342 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.001736 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.632864 B =16125.571735 C =16386.987694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.153 3.847 9 H 0.091 0.909 10 N -0.726 5.726 11 C 0.584 3.416 12 O -0.541 6.541 13 C -0.199 4.199 14 C 0.261 3.739 15 N -0.433 5.433 16 C 0.121 3.879 17 C -0.223 4.223 18 C -0.032 4.032 19 C -0.197 4.197 20 C 0.181 3.819 21 O -0.192 6.192 22 C -0.390 4.390 23 H 0.114 0.886 24 C 0.068 3.932 25 N -0.857 5.857 26 Si 0.907 3.093 27 H -0.270 1.270 28 H -0.278 1.278 29 H -0.257 1.257 30 C -0.232 4.232 31 C -0.021 4.021 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.151 0.849 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.286 0.714 48 H 0.140 0.860 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 -4.750 -25.425 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.048 3.952 9 H 0.109 0.891 10 N -0.377 5.377 11 C 0.373 3.627 12 O -0.420 6.420 13 C -0.206 4.206 14 C -0.052 4.052 15 N -0.110 5.110 16 C 0.098 3.902 17 C -0.225 4.225 18 C -0.051 4.051 19 C -0.216 4.216 20 C 0.125 3.875 21 O -0.093 6.093 22 C -0.465 4.465 23 H 0.131 0.869 24 C -0.139 4.139 25 N -0.492 5.492 26 Si 0.731 3.269 27 H -0.195 1.195 28 H -0.203 1.203 29 H -0.181 1.181 30 C -0.251 4.251 31 C -0.039 4.039 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.232 0.768 44 H 0.169 0.831 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.096 0.904 48 H 0.158 0.842 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.006 -3.653 -25.129 26.625 hybrid contribution 0.036 0.746 0.428 0.861 sum 8.042 -2.906 -24.701 26.139 Atomic orbital electron populations 1.21839 0.94574 1.02307 1.01903 1.21416 0.96188 0.99964 0.94291 0.90770 1.21550 0.95573 1.00895 0.96806 1.21579 0.95523 1.00891 0.97973 1.21493 1.00410 0.99602 0.93941 1.21941 0.95164 1.01159 0.98732 1.20992 0.93568 0.97495 0.83098 0.89106 1.45940 1.68021 1.14019 1.09683 1.17560 0.76937 0.86057 0.82180 1.90800 1.51410 1.15025 1.84805 1.17892 1.19941 0.86993 0.95791 1.25481 0.93559 0.92555 0.93570 1.81278 1.10322 1.11670 1.07777 1.23087 0.78827 0.99512 0.88814 1.18500 1.11134 0.96357 0.96468 1.20759 0.96533 0.92207 0.95592 1.19891 1.05130 1.01557 0.95064 1.19454 0.90951 0.90465 0.86643 1.83473 1.65266 1.38767 1.21823 1.20961 1.35346 0.99511 0.90656 0.86887 1.24583 0.95293 1.00265 0.93739 1.69595 1.37081 1.37785 1.04692 0.86151 0.80519 0.82257 0.77963 1.19470 1.20306 1.18056 1.20983 1.07909 0.96051 1.00145 1.20778 0.93706 0.98242 0.91182 0.92427 0.92490 0.92361 0.91553 0.91550 0.91866 0.91960 0.91651 0.91755 0.91879 0.91029 0.76778 0.83113 0.86569 0.86013 0.90374 0.84230 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.04 37.16 0.34 -0.71 16 2 C -0.10 -0.68 2.30 -90.62 -0.21 -0.88 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.63 5.20 -26.73 -0.14 -0.77 16 5 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 6 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 7 C -0.13 -1.08 5.49 -26.75 -0.15 -1.23 16 8 C 0.15 1.32 1.90 -67.95 -0.13 1.19 16 9 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 10 N -0.73 -7.23 4.34 -55.00 -0.24 -7.47 16 11 C 0.58 7.18 7.71 -12.66 -0.10 7.08 16 12 O -0.54 -7.86 15.97 5.23 0.08 -7.78 16 13 C -0.20 -2.52 5.82 -104.51 -0.61 -3.13 16 14 C 0.26 3.65 10.57 -22.47 -0.24 3.42 16 15 N -0.43 -6.79 18.17 41.84 0.76 -6.03 16 16 C 0.12 1.54 9.43 -36.45 -0.34 1.20 16 17 C -0.22 -3.43 5.52 -105.07 -0.58 -4.01 16 18 C -0.03 -0.54 8.25 -39.42 -0.33 -0.86 16 19 C -0.20 -3.74 9.93 -39.81 -0.40 -4.14 16 20 C 0.18 3.87 6.66 -38.81 -0.26 3.61 16 21 O -0.19 -4.69 8.57 1.03 0.01 -4.68 16 22 C -0.39 -10.12 9.94 30.93 0.31 -9.81 16 23 H 0.11 2.95 5.42 -52.48 -0.28 2.67 16 24 C 0.07 1.77 5.50 -17.51 -0.10 1.67 16 25 N -0.86 -22.91 13.96 55.49 0.77 -22.14 16 26 Si 0.91 20.17 28.62 -169.99 -4.86 15.31 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 29 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 30 C -0.23 -4.48 9.10 -39.81 -0.36 -4.84 16 31 C -0.02 -0.33 9.75 -39.42 -0.38 -0.71 16 32 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.40 3.70 7.26 -40.82 -0.30 3.40 16 44 H 0.15 1.64 7.61 -52.49 -0.40 1.24 16 45 H 0.12 1.81 5.88 -52.48 -0.31 1.51 16 46 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 47 H 0.29 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.14 2.79 5.64 -52.48 -0.30 2.49 16 49 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 405.72 15.07 6.11 6.11 Total: -1.00 -27.93 405.72 -8.34 -36.27 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.00 Total: 5.11 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.98 Total: -14.70 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 1.30 Total: -35.64 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.86 Total: 15.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -27.93 -8.34 -36.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008220698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds