Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34530 * 125.35089 * 2 1 4 4 C 1.46636 * 106.47255 * 179.97438 * 3 2 1 5 5 C 1.46385 * 127.08286 * 179.97438 * 4 3 2 6 6 N 1.30984 * 120.00297 * 180.02562 * 5 4 3 7 7 N 1.40102 * 119.99972 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99696 * 179.97438 * 7 6 5 9 9 O 1.22055 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.40142 * 119.99953 * 179.97438 * 8 7 6 11 11 H 1.08001 * 119.99630 * 351.12952 * 10 8 7 12 12 C 1.40122 * 120.00294 * 171.12576 * 10 8 7 13 13 N 1.30650 * 119.99593 * 8.84411 * 12 10 8 14 14 Si 1.86800 * 120.00226 * 188.84419 * 12 10 8 15 15 H 1.48501 * 109.46766 * 94.95985 * 14 12 10 16 16 H 1.48500 * 109.46848 * 214.95566 * 14 12 10 17 17 H 1.48496 * 109.46953 * 334.95783 * 14 12 10 18 18 C 1.39182 * 105.83990 * 0.02562 * 4 3 2 19 19 C 1.50702 * 126.00005 * 179.97438 * 18 4 3 20 20 N 1.34689 * 108.00113 * 0.23747 * 18 4 3 21 21 N 1.40097 * 124.80608 * 179.76017 * 20 18 4 22 22 C 1.34781 * 119.99913 * 216.02004 * 21 20 18 23 23 O 1.21553 * 119.99772 * 2.76879 * 22 21 20 24 24 C 1.47845 * 120.00053 * 182.76924 * 22 21 20 25 25 C 1.39579 * 120.14127 * 359.71954 * 24 22 21 26 26 C 1.37955 * 119.84729 * 179.78827 * 25 24 22 27 27 C 1.38363 * 120.14839 * 0.49180 * 26 25 24 28 28 C 1.38355 * 120.28848 * 359.74539 * 27 26 25 29 29 C 1.37949 * 120.14947 * 0.02562 * 28 27 26 30 30 H 1.09004 * 109.47181 * 82.60102 * 1 2 3 31 31 H 1.08997 * 109.46986 * 202.59577 * 1 2 3 32 32 H 1.08994 * 109.47424 * 322.60429 * 1 2 3 33 33 H 1.08002 * 126.76945 * 359.97118 * 3 2 1 34 34 H 1.07998 * 120.00211 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00095 * 359.97438 * 7 6 5 36 36 H 0.97006 * 119.99859 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47357 * 90.01862 * 19 18 4 38 38 H 1.09007 * 109.46926 * 330.01996 * 19 18 4 39 39 H 1.08996 * 109.47145 * 210.02658 * 19 18 4 40 40 H 0.96998 * 119.99900 * 36.01990 * 21 20 18 41 41 H 1.07998 * 120.07453 * 0.03373 * 25 24 22 42 42 H 1.08003 * 119.92840 * 180.23178 * 26 25 24 43 43 H 1.08005 * 119.85345 * 179.71886 * 27 26 25 44 44 H 1.08006 * 119.92241 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.07624 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0973 0.0000 4 6 3.6728 0.6228 0.0006 5 6 4.8859 1.4422 0.0003 6 7 6.0635 0.8689 0.0005 7 7 7.2245 1.6532 -0.0003 8 6 8.4363 1.0631 0.0003 9 8 8.5223 -0.1544 0.0012 10 6 9.5976 1.8476 -0.0010 11 1 9.5276 2.9154 -0.1468 12 6 10.8493 1.2466 0.1868 13 7 10.9547 -0.0556 0.1904 14 14 12.3673 2.3072 0.4322 15 1 12.6242 2.4751 1.8852 16 1 13.5375 1.6515 -0.2048 17 1 12.1469 3.6381 -0.1886 18 6 3.5990 -0.7671 0.0004 19 6 4.7696 -1.7162 0.0003 20 7 2.2978 -1.1148 -0.0057 21 7 1.8223 -2.4326 -0.0126 22 6 0.7080 -2.7433 -0.7043 23 8 0.1440 -1.8912 -1.3627 24 6 0.1716 -4.1203 -0.6621 25 6 0.8201 -5.1024 0.0883 26 6 0.3119 -6.3844 0.1269 27 6 -0.8323 -6.7000 -0.5842 28 6 -1.4771 -5.7323 -1.3340 29 6 -0.9820 -4.4454 -1.3774 30 1 -0.3634 0.1323 -1.0191 31 1 -0.3633 -0.9488 0.3948 32 1 -0.3634 0.8164 0.6241 33 1 1.9537 2.1251 -0.0004 34 1 4.8098 2.5195 0.0000 35 1 7.1561 2.6207 -0.0014 36 1 11.8212 -0.4718 0.3208 37 1 5.0515 -1.9456 1.0279 38 1 5.6125 -1.2535 -0.5132 39 1 4.4914 -2.6360 -0.5142 40 1 2.2950 -3.1214 0.4803 41 1 1.7155 -4.8583 0.6407 42 1 0.8105 -7.1444 0.7101 43 1 -1.2235 -7.7062 -0.5543 44 1 -2.3696 -5.9853 -1.8872 45 1 -1.4861 -3.6911 -1.9633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008334485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = 90.089262 kcal Electronic energy + Delta-G solvation = -29564.864185 eV Core-core repulsion = 25358.206353 eV Total energy + Delta-G solvation = -4206.657832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62131 -40.09903 -38.50757 -37.44692 -35.39152 -34.73396 -32.71749 -32.31783 -32.02265 -31.48295 -30.59612 -28.91549 -28.69192 -26.59439 -24.65029 -24.16401 -23.11368 -22.18456 -21.79577 -20.04274 -19.55884 -19.22468 -18.29338 -17.20469 -17.00889 -16.69554 -15.88262 -15.79288 -15.53606 -15.41647 -15.15733 -14.58647 -14.40553 -14.11556 -14.01340 -13.57177 -13.32525 -13.14870 -13.03401 -12.86281 -12.67894 -12.59605 -12.18740 -12.14428 -12.05777 -11.76476 -11.65447 -11.43941 -11.36794 -11.18302 -10.91411 -10.56352 -10.36776 -10.32070 -10.16087 -9.56546 -9.51402 -9.20038 -8.97558 -8.43258 -7.86873 -7.66455 -6.84531 -6.36168 -4.87724 0.27771 0.81654 1.36805 1.96386 2.30990 2.60371 3.07150 3.14170 3.18131 3.33246 3.61683 3.76288 3.88316 4.13603 4.20469 4.24527 4.38422 4.51383 4.58295 4.80853 4.91277 5.09212 5.18124 5.24392 5.28690 5.42234 5.43585 5.58017 5.69716 5.74977 5.80423 5.83969 5.86569 5.90088 6.02492 6.05272 6.09370 6.20238 6.30380 6.49414 6.55001 6.77379 6.88895 7.13616 7.20962 7.26734 7.36428 7.96091 7.99376 8.09195 8.82125 8.89116 9.43344 10.44159 10.74934 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.001903 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.317433 B =14708.523952 C =16113.180172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.032 3.968 3 C -0.170 4.170 4 C -0.107 4.107 5 C 0.070 3.930 6 N -0.210 5.210 7 N -0.595 5.595 8 C 0.563 3.437 9 O -0.559 6.559 10 C -0.540 4.540 11 H 0.070 0.930 12 C 0.090 3.910 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.262 1.262 18 C 0.054 3.946 19 C -0.087 4.087 20 N -0.243 5.243 21 N -0.525 5.525 22 C 0.554 3.446 23 O -0.502 6.502 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.124 4.124 27 C -0.090 4.090 28 C -0.126 4.126 29 C -0.055 4.055 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.366 0.634 36 H 0.273 0.727 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.049 0.951 40 H 0.426 0.574 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.705 -9.873 0.902 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.197 4.197 4 C -0.116 4.116 5 C -0.139 4.139 6 N -0.019 5.019 7 N -0.341 5.341 8 C 0.371 3.629 9 O -0.440 6.440 10 C -0.577 4.577 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.372 5.372 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.061 4.061 19 C -0.145 4.145 20 N -0.010 5.010 21 N -0.272 5.272 22 C 0.342 3.658 23 O -0.376 6.376 24 C -0.131 4.131 25 C -0.105 4.105 26 C -0.142 4.142 27 C -0.109 4.109 28 C -0.144 4.144 29 C -0.073 4.073 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.123 0.877 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.068 0.932 40 H 0.269 0.731 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.352 -11.433 0.440 26.906 hybrid contribution 0.726 1.457 0.417 1.680 sum -23.626 -9.976 0.856 25.660 Atomic orbital electron populations 1.20397 0.87733 1.01180 1.02840 1.20181 0.93659 0.83052 1.10650 1.21555 0.90557 0.96916 1.10633 1.18789 0.91167 0.89331 1.12363 1.23126 0.89430 0.96015 1.05339 1.74917 0.93805 1.25871 1.07351 1.47933 1.02793 1.06438 1.76911 1.16551 0.79603 0.88609 0.78128 1.90715 1.84918 1.14151 1.54182 1.19628 0.90409 0.95359 1.52261 0.91175 1.25739 1.00131 0.94905 0.92607 1.70054 1.25220 1.10138 1.31813 0.86243 0.80234 0.80567 0.79102 1.19547 1.20220 1.18640 1.21145 0.81997 0.94834 1.08125 1.20507 0.94890 0.95852 1.03225 1.42160 1.04905 0.94399 1.59565 1.45024 1.28683 0.99980 1.53501 1.18525 0.79436 0.88527 0.79318 1.90899 1.58636 1.48345 1.39688 1.19609 0.98666 0.91801 1.03048 1.21362 0.98840 0.93254 0.97030 1.21157 0.96729 0.96320 0.99987 1.21462 0.94758 0.99701 0.94940 1.21205 1.00643 0.92759 0.99822 1.21284 0.93412 0.96963 0.95690 0.89962 0.92805 0.91737 0.83205 0.87669 0.79841 0.91648 0.90857 0.86590 0.93185 0.73077 0.85567 0.84957 0.85249 0.84948 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 8.23 36.00 0.30 -0.48 16 2 C 0.03 0.47 6.40 -81.74 -0.52 -0.05 16 3 C -0.17 -2.51 10.99 -37.51 -0.41 -2.92 16 4 C -0.11 -1.85 6.34 -102.88 -0.65 -2.51 16 5 C 0.07 1.31 11.05 -14.64 -0.16 1.15 16 6 N -0.21 -4.80 8.64 32.09 0.28 -4.52 16 7 N -0.60 -14.55 6.26 28.82 0.18 -14.37 16 8 C 0.56 16.49 7.62 -15.54 -0.12 16.38 16 9 O -0.56 -18.54 15.24 4.87 0.07 -18.47 16 10 C -0.54 -15.13 9.22 -38.16 -0.35 -15.48 16 11 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 12 C 0.09 2.45 5.48 -17.35 -0.10 2.36 16 13 N -0.75 -21.87 11.75 55.55 0.65 -21.21 16 14 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 18 C 0.05 0.91 7.10 -80.99 -0.57 0.34 16 19 C -0.09 -1.47 9.65 36.01 0.35 -1.13 16 20 N -0.24 -3.62 3.58 -4.81 -0.02 -3.63 16 21 N -0.53 -6.13 6.08 30.53 0.19 -5.95 16 22 C 0.55 6.41 6.66 -12.33 -0.08 6.33 16 23 O -0.50 -7.09 11.87 5.32 0.06 -7.03 16 24 C -0.13 -1.11 5.87 -104.97 -0.62 -1.73 16 25 C -0.09 -0.58 9.54 -39.19 -0.37 -0.95 16 26 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 27 C -0.09 -0.46 10.04 -39.49 -0.40 -0.86 16 28 C -0.13 -0.73 10.03 -39.64 -0.40 -1.13 16 29 C -0.05 -0.43 9.60 -39.19 -0.38 -0.80 16 30 H 0.08 1.05 7.14 -51.93 -0.37 0.68 16 31 H 0.05 0.65 6.16 -51.93 -0.32 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.11 1.68 8.04 -52.49 -0.42 1.26 16 35 H 0.37 7.65 8.62 -182.60 -1.57 6.08 16 36 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.12 2.44 6.34 -51.93 -0.33 2.11 16 39 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.43 3.75 6.85 -182.60 -1.25 2.50 16 41 H 0.13 0.61 6.41 -52.49 -0.34 0.28 16 42 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 45 H 0.14 1.08 7.65 -52.49 -0.40 0.68 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -38.08 388.11 -10.15 -48.24 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.51 Total: 9.11 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -4.89 Total: -2.56 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 1.28 Total: -49.69 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.14 Total: -25.50 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.08 -10.15 -48.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008334485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.325 kcal (2) G-P(sol) polarization free energy of solvation -38.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds