Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86804 * 119.99456 * 2 1 4 4 H 1.48495 * 109.47380 * 239.99985 * 3 2 1 5 5 H 1.48501 * 109.47492 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47015 * 120.00465 * 3 2 1 7 7 C 1.40121 * 120.00747 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00300 * 179.97438 * 7 2 1 9 9 C 1.46201 * 119.99698 * 359.97438 * 7 2 1 10 10 O 1.21721 * 119.99605 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99878 * 180.02562 * 9 7 2 12 12 C 1.39103 * 119.99857 * 185.28305 * 11 9 7 13 13 C 1.39259 * 119.93721 * 213.62781 * 12 11 9 14 14 C 1.37623 * 120.06330 * 180.02562 * 13 12 11 15 15 C 1.39777 * 119.93799 * 359.96987 * 14 13 12 16 16 C 1.47597 * 120.06567 * 179.97438 * 15 14 13 17 17 O 1.21591 * 119.99682 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00457 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00444 * 179.97438 * 18 16 15 20 20 C 1.52993 * 109.47430 * 179.97438 * 19 18 16 21 21 O 1.42904 * 109.47004 * 65.00130 * 20 19 18 22 22 C 1.35895 * 117.00030 * 179.97438 * 21 20 19 23 23 C 1.38739 * 120.05889 * 179.97438 * 22 21 20 24 24 C 1.38134 * 119.94652 * 179.97438 * 23 22 21 25 25 C 1.38264 * 120.06045 * 0.02834 * 24 23 22 26 26 C 1.38271 * 120.11001 * 359.95350 * 25 24 23 27 27 C 1.38151 * 120.05188 * 0.04400 * 26 25 24 28 28 C 1.39783 * 119.87507 * 0.25739 * 15 14 13 29 29 C 1.37624 * 119.93531 * 359.51437 * 28 15 14 30 30 H 0.96995 * 120.00515 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00151 * 5.28241 * 11 9 7 32 32 H 1.07999 * 119.96558 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.03228 * 179.97438 * 14 13 12 34 34 H 0.97000 * 119.99872 * 359.97438 * 18 16 15 35 35 H 1.09001 * 109.46867 * 59.99613 * 19 18 16 36 36 H 1.09004 * 109.46985 * 300.00419 * 19 18 16 37 37 H 1.08999 * 109.47180 * 305.00327 * 20 19 18 38 38 H 1.08998 * 109.47190 * 184.99669 * 20 19 18 39 39 H 1.08003 * 120.01850 * 359.70537 * 23 22 21 40 40 H 1.08004 * 119.97419 * 179.97438 * 24 23 22 41 41 H 1.07993 * 119.95063 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.97274 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.02533 * 179.97438 * 27 26 25 44 44 H 1.08006 * 120.02917 * 179.74143 * 28 15 14 45 45 H 1.07999 * 119.97169 * 180.20762 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 3.0940 1.6967 -1.2124 5 1 1.2752 2.7466 0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2133 -0.0010 9 6 1.2762 -2.4796 -0.0005 10 8 0.0590 -2.4796 -0.0005 11 7 1.9502 -3.6467 -0.0005 12 6 1.2592 -4.8489 -0.1115 13 6 1.7291 -5.9837 0.5448 14 6 1.0478 -7.1745 0.4365 15 6 -0.1172 -7.2441 -0.3328 16 6 -0.8498 -8.5200 -0.4514 17 8 -0.4397 -9.5118 0.1200 18 7 -1.9727 -8.5858 -1.1938 19 6 -2.6995 -9.8523 -1.3120 20 6 -3.9274 -9.6545 -2.2030 21 8 -3.5061 -9.3351 -3.5307 22 6 -4.4811 -9.1273 -4.4542 23 6 -4.1434 -8.8129 -5.7626 24 6 -5.1363 -8.6027 -6.6996 25 6 -6.4660 -8.7048 -6.3344 26 6 -6.8053 -9.0184 -5.0312 27 6 -5.8159 -9.2296 -4.0904 28 6 -0.5839 -6.1046 -0.9943 29 6 0.0988 -4.9153 -0.8786 30 1 -0.4851 0.8400 0.0004 31 1 2.9171 -3.6484 0.0768 32 1 2.6290 -5.9291 1.1394 33 1 1.4129 -8.0544 0.9453 34 1 -2.2996 -7.7947 -1.6499 35 1 -3.0179 -10.1821 -0.3231 36 1 -2.0472 -10.6057 -1.7537 37 1 -4.5349 -8.8399 -1.8088 38 1 -4.5160 -10.5717 -2.2194 39 1 -3.1049 -8.7283 -6.0471 40 1 -4.8739 -8.3575 -7.7181 41 1 -7.2408 -8.5397 -7.0683 42 1 -7.8446 -9.0980 -4.7485 43 1 -6.0815 -9.4742 -3.0725 44 1 -1.4815 -6.1567 -1.5927 45 1 -0.2631 -4.0337 -1.3867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008920853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = -60.074760 kcal Electronic energy + Delta-G solvation = -28937.223525 eV Core-core repulsion = 24691.761341 eV Total energy + Delta-G solvation = -4245.462184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52093 -39.91095 -38.83403 -37.79493 -36.77194 -34.90971 -33.61596 -32.58015 -31.49045 -30.94410 -30.36244 -29.72803 -28.69191 -26.46272 -24.36636 -23.03093 -22.70870 -22.31313 -21.69975 -20.66752 -19.71748 -18.70103 -17.82764 -17.68518 -16.68282 -16.50087 -16.28065 -15.98408 -15.67806 -15.37152 -15.11414 -14.71406 -14.56520 -14.35872 -14.00114 -13.78759 -13.66835 -13.47880 -13.23116 -12.97634 -12.86455 -12.71036 -12.54420 -12.15817 -12.04321 -11.89548 -11.82686 -11.38104 -11.36685 -11.14478 -11.12628 -10.80005 -10.65727 -10.44042 -9.78072 -9.46135 -9.33570 -9.14391 -8.97660 -8.58848 -8.53712 -7.88654 -7.24122 -6.44260 -4.92221 1.00847 1.12372 1.32251 1.89646 2.76446 3.02830 3.09166 3.10785 3.17820 3.18344 3.47230 3.91510 4.19395 4.30451 4.45054 4.49426 4.51178 4.59565 4.64064 4.76711 4.84629 5.04281 5.06500 5.08431 5.19754 5.24537 5.41082 5.42791 5.52168 5.54560 5.67551 5.75359 5.96820 5.97456 6.07643 6.08021 6.21362 6.35001 6.43919 6.46075 6.68577 6.79941 6.91965 7.06633 7.17783 7.22809 7.54007 7.60560 7.90956 8.04111 8.33546 8.75293 9.06593 10.25890 10.45954 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.002009 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.350771 B =13935.476553 C =16204.478785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.539 3.461 10 O -0.557 6.557 11 N -0.696 5.696 12 C 0.227 3.773 13 C -0.190 4.190 14 C -0.032 4.032 15 C -0.197 4.197 16 C 0.571 3.429 17 O -0.553 6.553 18 N -0.731 5.731 19 C 0.125 3.875 20 C 0.046 3.954 21 O -0.311 6.311 22 C 0.130 3.870 23 C -0.151 4.151 24 C -0.081 4.081 25 C -0.160 4.160 26 C -0.081 4.081 27 C -0.210 4.210 28 C -0.061 4.061 29 C -0.141 4.141 30 H 0.274 0.726 31 H 0.396 0.604 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.404 0.596 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.117 0.883 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 -16.949 -8.891 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.347 3.653 10 O -0.438 6.438 11 N -0.337 5.337 12 C 0.126 3.874 13 C -0.212 4.212 14 C -0.051 4.051 15 C -0.202 4.202 16 C 0.362 3.638 17 O -0.432 6.432 18 N -0.385 5.385 19 C 0.001 3.999 20 C -0.030 4.030 21 O -0.224 6.224 22 C 0.085 3.915 23 C -0.170 4.170 24 C -0.099 4.099 25 C -0.179 4.179 26 C -0.099 4.099 27 C -0.229 4.229 28 C -0.080 4.080 29 C -0.162 4.162 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.240 0.760 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.135 0.865 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.971 -17.406 -8.505 21.788 hybrid contribution 0.463 1.204 -0.001 1.290 sum -9.509 -16.202 -8.507 20.622 Atomic orbital electron populations 1.69959 1.07190 1.28108 1.33251 1.25754 0.94740 1.00606 0.92478 0.86311 0.79799 0.80370 0.79677 1.19045 1.20338 1.19072 1.20841 0.93877 0.88911 1.53567 0.90881 1.18432 0.87527 0.82039 0.77327 1.90644 1.13609 1.85940 1.53635 1.44255 1.10002 1.04518 1.74958 1.18219 0.92468 0.86460 0.90294 1.20866 1.03547 0.92924 1.03872 1.20826 0.92380 0.97118 0.94821 1.19493 0.99956 0.93059 1.07651 1.18316 0.79569 0.88464 0.77495 1.90724 1.67800 1.37393 1.47305 1.45840 1.27329 1.12735 1.52554 1.21336 0.92188 0.87635 0.98701 1.23144 0.97603 1.01582 0.80627 1.86139 1.32869 1.84643 1.18787 1.19035 0.87301 0.95636 0.89511 1.20513 1.00738 1.05114 0.90589 1.21003 0.92407 0.97351 0.99107 1.21088 0.96436 1.03766 0.96583 1.20965 0.98973 0.96993 0.92995 1.21282 0.92100 1.08581 1.00940 1.21026 0.98177 0.91835 0.96984 1.21250 0.96663 0.98187 1.00101 0.91534 0.76991 0.85759 0.85364 0.76008 0.89234 0.90282 0.90969 0.90223 0.85057 0.85324 0.85944 0.85830 0.85471 0.86534 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.29 11.82 55.55 0.66 -20.64 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.15 16 3 Si 0.91 18.90 29.56 -169.99 -5.02 13.88 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.54 -14.08 9.54 -35.68 -0.34 -14.42 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.54 14.32 7.46 -13.06 -0.10 14.23 16 10 O -0.56 -16.65 12.69 5.17 0.07 -16.58 16 11 N -0.70 -14.86 5.30 -11.18 -0.06 -14.92 16 12 C 0.23 4.54 6.27 -83.80 -0.53 4.01 16 13 C -0.19 -3.23 9.94 -39.43 -0.39 -3.63 16 14 C -0.03 -0.52 9.58 -39.23 -0.38 -0.90 16 15 C -0.20 -3.25 5.88 -104.93 -0.62 -3.87 16 16 C 0.57 8.93 7.76 -12.44 -0.10 8.83 16 17 O -0.55 -10.01 16.34 5.29 0.09 -9.92 16 18 N -0.73 -8.86 5.45 -61.33 -0.33 -9.20 16 19 C 0.13 1.20 6.06 -4.04 -0.02 1.17 16 20 C 0.05 0.35 4.87 37.15 0.18 0.53 16 21 O -0.31 -3.13 10.08 -19.41 -0.20 -3.33 16 22 C 0.13 1.28 6.69 -39.21 -0.26 1.02 16 23 C -0.15 -1.42 9.99 -39.43 -0.39 -1.81 16 24 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 25 C -0.16 -1.22 10.04 -39.56 -0.40 -1.61 16 26 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 27 C -0.21 -1.76 9.04 -39.43 -0.36 -2.12 16 28 C -0.06 -1.01 9.53 -39.23 -0.37 -1.38 16 29 C -0.14 -2.83 8.62 -39.43 -0.34 -3.17 16 30 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 31 H 0.40 7.15 8.79 -40.82 -0.36 6.79 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.13 1.96 7.64 -52.49 -0.40 1.56 16 34 H 0.40 4.44 6.49 -40.82 -0.26 4.18 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 38 H 0.08 0.44 7.66 -51.93 -0.40 0.05 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.13 0.83 6.30 -52.48 -0.33 0.50 16 44 H 0.12 1.60 6.39 -52.48 -0.34 1.26 16 45 H 0.14 3.27 6.41 -52.49 -0.34 2.93 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -34.43 389.49 -9.57 -44.00 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -5.33 Total: 13.88 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -5.30 Total: -3.05 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.26 Total: -44.75 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.04 Total: -29.83 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.43 -9.57 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008920853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.075 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds