Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48502 * 109.47200 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46716 * 120.00246 * 3 2 1 6 6 H 1.48496 * 109.47094 * 240.00503 * 3 2 1 7 7 C 1.38897 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99726 * 154.86198 * 7 2 1 9 9 N 1.37511 * 119.99901 * 334.85814 * 7 2 1 10 10 C 1.33788 * 124.17772 * 325.51876 * 9 7 2 11 11 O 1.21525 * 123.76560 * 0.02562 * 10 9 7 12 12 N 1.34506 * 112.46249 * 179.84637 * 10 9 7 13 13 C 1.47367 * 106.63609 * 0.46469 * 12 10 9 14 14 C 1.51912 * 109.80614 * 116.85804 * 13 12 10 15 15 C 1.53608 * 109.04688 * 184.39485 * 14 13 12 16 16 S 1.81780 * 106.99563 * 288.50073 * 15 14 13 17 17 O 1.42107 * 110.63908 * 156.49379 * 16 15 14 18 18 O 1.42090 * 110.64475 * 293.70389 * 16 15 14 19 19 C 1.76581 * 103.64368 * 45.10400 * 16 15 14 20 20 C 1.38822 * 117.84228 * 168.10324 * 19 16 15 21 21 C 1.37885 * 120.70482 * 179.50327 * 20 19 16 22 22 C 1.38504 * 119.37856 * 359.91938 * 21 20 19 23 23 F 1.35094 * 120.07928 * 180.31895 * 22 21 20 24 24 C 1.37926 * 119.84571 * 0.30155 * 22 21 20 25 25 C 1.37550 * 121.87489 * 347.99280 * 19 16 15 26 26 C 1.34751 * 124.17460 * 145.82441 * 9 7 2 27 27 O 1.21236 * 127.15102 * 359.90762 * 26 9 7 28 28 H 0.97008 * 119.99924 * 174.85433 * 1 2 3 29 29 H 0.97000 * 126.68828 * 180.23186 * 12 10 9 30 30 H 1.09001 * 109.53545 * 304.26331 * 14 13 12 31 31 H 1.08994 * 109.53895 * 64.51687 * 14 13 12 32 32 H 1.08999 * 109.95042 * 47.87228 * 15 14 13 33 33 H 1.08995 * 109.95109 * 169.13166 * 15 14 13 34 34 H 1.08005 * 119.64607 * 359.52867 * 20 19 16 35 35 H 1.07997 * 120.31086 * 179.90129 * 21 20 19 36 36 H 1.08001 * 119.51847 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 1.2827 2.7465 0.0006 5 1 3.1015 1.6964 1.2125 6 1 3.1014 1.6966 -1.2125 7 6 2.0083 -1.2029 -0.0005 8 1 3.0117 -1.2469 -0.3979 9 7 1.4185 -2.3376 0.5049 10 6 0.5739 -2.3472 1.5425 11 8 0.2380 -1.3492 2.1492 12 7 0.1353 -3.5842 1.8367 13 6 0.7806 -4.4995 0.8789 14 6 1.6780 -5.4738 1.6226 15 6 2.4252 -6.3460 0.6025 16 16 1.2039 -7.4810 -0.1218 17 8 1.6335 -7.9301 -1.3997 18 8 0.7256 -8.3932 0.8570 19 6 -0.1803 -6.4397 -0.4650 20 6 -1.1976 -6.9538 -1.2574 21 6 -2.3104 -6.1956 -1.5541 22 6 -2.4093 -4.9086 -1.0519 23 9 -3.4963 -4.1556 -1.3284 24 6 -1.3956 -4.3977 -0.2685 25 6 -0.2663 -5.1592 0.0297 26 6 1.6243 -3.5778 0.0200 27 8 2.3362 -3.8917 -0.9098 28 1 -0.4850 -0.8367 -0.0753 29 1 -0.4826 -3.8271 2.5439 30 1 2.3977 -4.9195 2.2249 31 1 1.0711 -6.1076 2.2691 32 1 2.8578 -5.7187 -0.1769 33 1 3.2097 -6.9137 1.1025 34 1 -1.1168 -7.9585 -1.6454 35 1 -3.0974 -6.6013 -2.1726 36 1 -1.4780 -3.3933 0.1200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009498036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -102.450195 kcal Electronic energy + Delta-G solvation = -30798.189221 eV Core-core repulsion = 26291.206957 eV Total energy + Delta-G solvation = -4506.982264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.056 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -49.15835 -42.29997 -39.28502 -37.80892 -37.19757 -36.32515 -35.99607 -34.85223 -33.45694 -31.74075 -31.06660 -30.89787 -27.06936 -25.57228 -24.00451 -23.40939 -22.69656 -21.69573 -20.41594 -19.05114 -18.42452 -17.91081 -17.45918 -17.33008 -17.05640 -16.32678 -15.90015 -15.82189 -15.65029 -15.60190 -15.02077 -14.65736 -14.56673 -14.07363 -13.97241 -13.90116 -13.79145 -13.46730 -13.16226 -12.91660 -12.76556 -12.62901 -12.40508 -12.18851 -12.09797 -12.00775 -11.55567 -11.08896 -11.06527 -10.64240 -10.53010 -10.28003 -9.99432 -9.54651 -9.53185 -9.33194 -9.27307 -8.97273 -8.41207 -6.95087 -4.46203 -0.05480 0.41738 0.82463 2.19516 2.58198 2.86178 3.11058 3.26352 3.30263 3.42566 3.48126 3.65356 3.71262 3.93471 4.04974 4.07719 4.25624 4.30172 4.42314 4.52397 4.70631 4.76852 4.92469 4.94825 5.02040 5.07697 5.27188 5.43671 5.52329 5.69036 5.70226 5.80121 5.82064 6.06353 6.49252 7.20044 7.37167 7.49289 8.04159 8.18292 8.43433 8.92882 9.28605 10.36472 Molecular weight = 354.06amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.004894 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.723491 B = 5720.403997 C = 6785.040833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 1.086 2.914 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.449 4.449 8 H 0.104 0.896 9 N -0.395 5.395 10 C 0.667 3.333 11 O -0.513 6.513 12 N -0.734 5.734 13 C 0.140 3.860 14 C -0.100 4.100 15 C -0.610 4.610 16 S 2.496 3.504 17 O -0.930 6.930 18 O -0.933 6.933 19 C -0.634 4.634 20 C 0.001 3.999 21 C -0.162 4.162 22 C 0.154 3.846 23 F -0.127 7.127 24 C -0.153 4.153 25 C 0.038 3.962 26 C 0.481 3.519 27 O -0.492 6.492 28 H 0.272 0.728 29 H 0.431 0.569 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -13.327 1.802 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.910 3.090 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.121 0.879 9 N -0.126 5.126 10 C 0.370 3.630 11 O -0.385 6.385 12 N -0.400 5.400 13 C 0.048 3.952 14 C -0.140 4.140 15 C -0.741 4.741 16 S 2.675 3.325 17 O -0.927 6.927 18 O -0.930 6.930 19 C -0.720 4.720 20 C -0.018 4.018 21 C -0.181 4.181 22 C 0.135 3.865 23 F -0.105 7.105 24 C -0.173 4.173 25 C 0.036 3.964 26 C 0.268 3.732 27 O -0.368 6.368 28 H 0.082 0.918 29 H 0.275 0.725 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.225 -11.977 1.503 12.133 hybrid contribution -0.702 -0.814 0.301 1.116 sum -1.927 -12.791 1.804 13.061 Atomic orbital electron populations 1.70635 1.07497 1.31242 1.35042 1.26580 0.95775 1.02858 0.92445 0.83289 0.74986 0.73566 0.77207 1.20086 1.20501 1.20634 1.20259 1.02165 0.85501 1.49359 0.87870 1.41911 1.38135 1.08219 1.24323 1.16422 0.81616 0.83421 0.81524 1.90988 1.60309 1.33343 1.53838 1.45686 1.51675 1.06089 1.36591 1.20064 0.91875 0.92943 0.90341 1.21426 0.98526 0.97094 0.96937 1.30468 1.15514 1.15730 1.12373 1.05611 0.75995 0.75411 0.75450 1.93606 1.81356 1.78643 1.39111 1.93603 1.79117 1.58516 1.61811 1.30056 1.20706 1.08713 1.12502 1.20596 0.90325 0.99405 0.91452 1.21222 1.00475 0.93193 1.03225 1.17672 0.83852 0.89500 0.95513 1.91564 1.51703 1.75668 1.91561 1.21444 0.93569 1.02114 1.00198 1.18813 0.93144 0.91134 0.93322 1.20182 0.84549 0.84178 0.84257 1.90581 1.39714 1.79057 1.27451 0.91780 0.72502 0.87051 0.88022 0.81388 0.83136 0.83535 0.83246 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.07 12.17 55.49 0.68 -22.40 16 2 C 0.04 1.04 4.53 -17.50 -0.08 0.96 16 3 Si 1.09 23.40 29.99 -169.99 -5.10 18.30 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.45 -11.90 9.48 -14.76 -0.14 -12.04 16 8 H 0.10 2.71 7.95 -52.48 -0.42 2.29 16 9 N -0.40 -9.46 2.51 -65.56 -0.16 -9.63 16 10 C 0.67 14.96 6.87 -88.04 -0.61 14.36 16 11 O -0.51 -13.39 15.24 5.34 0.08 -13.31 16 12 N -0.73 -12.10 4.62 -54.79 -0.25 -12.36 16 13 C 0.14 2.26 0.87 -134.05 -0.12 2.14 16 14 C -0.10 -1.21 4.95 -26.97 -0.13 -1.34 16 15 C -0.61 -6.91 6.50 37.47 0.24 -6.67 16 16 S 2.50 31.76 5.22 -107.50 -0.56 31.20 16 17 O -0.93 -14.19 17.81 -57.51 -1.02 -15.21 16 18 O -0.93 -12.82 17.92 -57.51 -1.03 -13.85 16 19 C -0.63 -8.87 5.68 -39.62 -0.22 -9.10 16 20 C 0.00 0.02 9.48 -39.49 -0.37 -0.36 16 21 C -0.16 -1.95 10.05 -39.61 -0.40 -2.35 16 22 C 0.15 2.25 7.29 -39.60 -0.29 1.96 16 23 F -0.13 -1.90 17.27 2.25 0.04 -1.86 16 24 C -0.15 -2.49 9.07 -39.25 -0.36 -2.84 16 25 C 0.04 0.60 4.94 -104.73 -0.52 0.08 16 26 C 0.48 10.11 6.48 -10.54 -0.07 10.04 16 27 O -0.49 -11.02 15.49 5.60 0.09 -10.93 16 28 H 0.27 7.74 7.11 -40.82 -0.29 7.45 16 29 H 0.43 5.63 8.96 -40.82 -0.37 5.27 16 30 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.10 0.92 8.01 -51.93 -0.42 0.51 16 32 H 0.17 2.28 5.37 -51.93 -0.28 2.00 16 33 H 0.15 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.15 1.40 8.05 -52.48 -0.42 0.98 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.15 2.61 6.82 -52.49 -0.36 2.25 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -35.36 322.36 -8.06 -43.42 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -2.61 Total: 6.92 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.06 Total: -5.16 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.26 Total: -44.38 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -1.89 Total: -53.30 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.10 Total: 18.30 kcal Atomic # 16 Polarization: 31.76 SS G_CDS: -0.56 Total: 31.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.36 -8.06 -43.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009498036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.034 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds