Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48497 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47099 * 300.00581 * 3 2 1 6 6 H 1.48498 * 109.46748 * 60.00522 * 3 2 1 7 7 C 1.39861 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00136 * 197.95543 * 7 2 1 9 9 C 1.41144 * 119.99863 * 17.96157 * 7 2 1 10 10 C 1.40887 * 120.15375 * 204.60293 * 9 7 2 11 11 C 1.36330 * 119.83788 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.16026 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.84558 * 180.02562 * 12 11 10 14 14 C 1.46499 * 120.00559 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.46690 * 34.99803 * 14 13 12 16 16 C 1.50697 * 109.47274 * 275.00234 * 14 13 12 17 17 O 1.21281 * 120.00078 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00263 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00131 * 179.97438 * 18 16 14 20 20 C 1.53001 * 117.49496 * 223.62491 * 19 18 16 21 21 C 1.52998 * 60.00022 * 252.51241 * 20 19 18 22 22 C 1.50699 * 109.47296 * 155.00056 * 14 13 12 23 23 C 1.38239 * 119.97305 * 39.72553 * 22 14 13 24 24 C 1.38205 * 120.02194 * 179.76725 * 23 22 14 25 25 C 1.38457 * 119.97252 * 0.51042 * 24 23 22 26 26 F 1.35101 * 120.02469 * 179.76628 * 25 24 23 27 27 C 1.38454 * 119.95084 * 359.74323 * 25 24 23 28 28 C 1.38199 * 119.97650 * 0.02562 * 27 25 24 29 29 C 1.39567 * 120.31700 * 0.27180 * 12 11 10 30 30 C 1.36346 * 120.15683 * 359.44799 * 29 12 11 31 31 H 0.96997 * 119.99868 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.07794 * 359.97438 * 10 9 7 33 33 H 1.08006 * 119.92446 * 179.97438 * 11 10 9 34 34 H 0.97006 * 119.99687 * 0.02562 * 13 12 11 35 35 H 0.97001 * 119.99823 * 0.02562 * 18 16 14 36 36 H 1.08998 * 115.55241 * 9.32802 * 19 18 16 37 37 H 1.08991 * 117.50460 * 359.97438 * 20 19 18 38 38 H 1.09005 * 117.49710 * 145.01904 * 20 19 18 39 39 H 1.09000 * 117.49759 * 252.51268 * 21 20 19 40 40 H 1.08998 * 117.51574 * 107.48317 * 21 20 19 41 41 H 1.07999 * 119.99222 * 0.02562 * 23 22 14 42 42 H 1.08000 * 120.01054 * 180.25057 * 24 23 22 43 43 H 1.08002 * 120.01381 * 179.97438 * 27 25 24 44 44 H 1.07996 * 119.98900 * 180.02562 * 28 27 25 45 45 H 1.08000 * 119.92442 * 179.70232 * 29 12 11 46 46 H 1.08002 * 120.07982 * 180.27074 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8844 2.3963 1.2126 7 6 2.0084 -1.2112 -0.0005 8 1 3.0489 -1.2342 0.2878 9 6 1.3542 -2.4036 -0.3780 10 6 1.8266 -3.6473 0.0857 11 6 1.1902 -4.7950 -0.2834 12 6 0.0735 -4.7401 -1.1189 13 7 -0.5700 -5.9131 -1.4903 14 6 -1.7428 -5.8595 -2.3666 15 1 -1.6215 -5.0502 -3.0866 16 6 -2.9778 -5.6144 -1.5387 17 8 -2.8875 -5.4966 -0.3350 18 7 -4.1829 -5.5261 -2.1358 19 6 -5.3836 -5.2884 -1.3308 20 6 -6.6286 -6.1153 -1.6581 21 6 -6.5790 -4.6302 -2.0226 22 6 -1.8817 -7.1683 -3.1007 23 6 -1.6295 -8.3584 -2.4442 24 6 -1.7613 -9.5595 -3.1151 25 6 -2.1356 -9.5699 -4.4480 26 9 -2.2601 -10.7432 -5.1061 27 6 -2.3828 -8.3770 -5.1059 28 6 -2.2551 -7.1773 -4.4317 29 6 -0.3963 -3.5121 -1.5870 30 6 0.2269 -2.3558 -1.2215 31 1 -0.4850 0.8400 0.0004 32 1 2.6914 -3.6913 0.7312 33 1 1.5514 -5.7492 0.0709 34 1 -0.2435 -6.7681 -1.1688 35 1 -4.2552 -5.6206 -3.0984 36 1 -5.2064 -5.0373 -0.2850 37 1 -6.5545 -6.8357 -2.4726 38 1 -7.2707 -6.4085 -0.8275 39 1 -7.1885 -3.9463 -1.4319 40 1 -6.4719 -4.3737 -3.0766 41 1 -1.3336 -8.3499 -1.4056 42 1 -1.5682 -10.4895 -2.6009 43 1 -2.6745 -8.3838 -6.1457 44 1 -2.4482 -6.2467 -4.9445 45 1 -1.2580 -3.4773 -2.2371 46 1 -0.1404 -1.4059 -1.5810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010172781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = 4.537822 kcal Electronic energy + Delta-G solvation = -30376.981102 eV Core-core repulsion = 26146.693519 eV Total energy + Delta-G solvation = -4230.287583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.15593 -40.42836 -38.92503 -37.88322 -36.98326 -35.03079 -33.35539 -32.71588 -31.46817 -31.01016 -29.48212 -28.52249 -26.59463 -24.33046 -23.27798 -22.72175 -22.56981 -21.82426 -21.00683 -20.60146 -19.70825 -18.05633 -17.34245 -17.21059 -16.95193 -16.63489 -16.23196 -15.84757 -15.48833 -15.01426 -14.95383 -14.54548 -14.48200 -14.20295 -13.87638 -13.79535 -13.60117 -13.23289 -12.80630 -12.70962 -12.57353 -12.52702 -12.13554 -11.79530 -11.74319 -11.65870 -11.46732 -11.34620 -11.18174 -11.03813 -10.80977 -10.67424 -10.51640 -10.01676 -9.68062 -9.42550 -9.32551 -9.26101 -8.84158 -8.73529 -8.54561 -7.48040 -6.64148 -6.43078 -4.03063 0.77837 0.91810 2.72148 2.86270 3.02565 3.12008 3.16140 3.21608 3.26300 3.38727 3.77675 3.95584 4.06333 4.17718 4.41882 4.42871 4.57772 4.63386 4.75417 4.80215 4.83731 4.91341 5.00670 5.02998 5.33302 5.42084 5.58382 5.63411 5.64030 5.80174 5.82905 5.84929 5.87372 5.91498 6.15244 6.23874 6.30551 6.50141 6.55061 6.82638 6.91581 7.20427 7.35761 7.44847 7.56257 7.68597 7.81329 8.15410 8.23763 8.38184 8.46276 8.60297 8.78120 9.07092 9.15001 10.38374 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.002762 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.181031 B =10134.884172 C =11813.560055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.187 4.187 11 C -0.149 4.149 12 C 0.094 3.906 13 N -0.729 5.729 14 C 0.192 3.808 15 H 0.110 0.890 16 C 0.498 3.502 17 O -0.505 6.505 18 N -0.707 5.707 19 C 0.085 3.915 20 C -0.197 4.197 21 C -0.191 4.191 22 C -0.093 4.093 23 C -0.074 4.074 24 C -0.148 4.148 25 C 0.097 3.903 26 F -0.141 7.141 27 C -0.149 4.149 28 C -0.081 4.081 29 C -0.158 4.158 30 C -0.125 4.125 31 H 0.275 0.725 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.389 0.611 35 H 0.397 0.603 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 -14.133 -10.266 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.075 3.925 10 C -0.207 4.207 11 C -0.171 4.171 12 C -0.002 4.002 13 N -0.364 5.364 14 C 0.080 3.920 15 H 0.127 0.873 16 C 0.282 3.718 17 O -0.377 6.377 18 N -0.359 5.359 19 C -0.021 4.021 20 C -0.235 4.235 21 C -0.229 4.229 22 C -0.094 4.094 23 C -0.092 4.092 24 C -0.167 4.167 25 C 0.078 3.922 26 F -0.120 7.120 27 C -0.168 4.168 28 C -0.100 4.100 29 C -0.179 4.179 30 C -0.145 4.145 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.230 0.770 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.099 0.901 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.171 -13.808 -9.443 20.115 hybrid contribution 0.141 0.242 -0.397 0.486 sum -11.030 -13.566 -9.840 20.063 Atomic orbital electron populations 1.69880 1.07354 1.28496 1.37477 1.25808 0.94642 1.00907 0.92755 0.86373 0.81006 0.81622 0.78305 1.18614 1.19984 1.20281 1.19404 0.97946 0.91346 1.40976 0.90865 1.17497 0.92249 0.92013 0.90751 1.20536 1.02796 0.92536 1.04836 1.19754 0.97705 0.97136 1.02506 1.17211 0.95636 0.85072 1.02263 1.43535 1.29615 1.06745 1.56471 1.19311 0.85731 0.95136 0.91845 0.87273 1.21754 0.84412 0.76062 0.89578 1.90733 1.85542 1.46926 1.14489 1.45480 1.05857 1.74459 1.10140 1.21563 0.80402 1.02876 0.97273 1.23403 1.01854 0.94224 1.04045 1.23354 1.01926 0.95772 1.01872 1.19854 1.00859 0.94411 0.94327 1.20883 0.97110 0.90844 1.00410 1.21138 1.02741 0.99690 0.93108 1.17748 1.02149 0.81285 0.91037 1.91503 1.93599 1.45918 1.80946 1.21099 1.03528 0.91057 1.01110 1.20896 0.97977 0.98022 0.93097 1.19987 1.01186 0.92063 1.04686 1.20889 0.98301 0.96287 0.98977 0.91386 0.88961 0.89511 0.77619 0.76959 0.84559 0.88729 0.88226 0.87957 0.88549 0.84716 0.84521 0.84436 0.84459 0.90070 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.62 10.97 55.54 0.61 -21.01 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.08 2.11 5.57 -106.79 -0.60 1.52 16 10 C -0.19 -4.67 9.74 -39.27 -0.38 -5.05 16 11 C -0.15 -3.38 9.82 -39.77 -0.39 -3.77 16 12 C 0.09 2.04 6.55 -83.69 -0.55 1.49 16 13 N -0.73 -12.48 4.68 -54.29 -0.25 -12.73 16 14 C 0.19 2.70 2.28 -70.24 -0.16 2.54 16 15 H 0.11 1.51 6.30 -51.93 -0.33 1.18 16 16 C 0.50 7.77 7.04 -10.99 -0.08 7.69 16 17 O -0.50 -10.34 15.92 5.56 0.09 -10.25 16 18 N -0.71 -8.41 5.47 -53.81 -0.29 -8.70 16 19 C 0.09 0.99 6.43 -67.93 -0.44 0.55 16 20 C -0.20 -1.72 10.46 -26.73 -0.28 -2.00 16 21 C -0.19 -1.69 10.45 -26.73 -0.28 -1.97 16 22 C -0.09 -1.02 4.74 -104.62 -0.50 -1.51 16 23 C -0.07 -0.78 9.05 -39.59 -0.36 -1.14 16 24 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 25 C 0.10 0.94 7.30 -39.42 -0.29 0.66 16 26 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 27 C -0.15 -1.26 10.03 -39.52 -0.40 -1.65 16 28 C -0.08 -0.70 9.51 -39.59 -0.38 -1.08 16 29 C -0.16 -3.68 9.07 -39.77 -0.36 -4.04 16 30 C -0.12 -3.28 8.64 -39.26 -0.34 -3.62 16 31 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 32 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 33 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 34 H 0.39 6.01 6.85 -40.82 -0.28 5.73 16 35 H 0.40 3.53 8.55 -40.82 -0.35 3.18 16 36 H 0.14 1.89 7.40 -51.93 -0.38 1.51 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.14 1.43 6.90 -52.49 -0.36 1.07 16 42 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.14 0.87 8.04 -52.49 -0.42 0.44 16 45 H 0.08 1.71 6.14 -52.49 -0.32 1.39 16 46 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -32.16 393.44 -11.21 -43.36 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -5.70 Total: 14.96 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -6.59 Total: -24.41 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.06 Total: -42.45 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.16 -11.21 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010172781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.901 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds