Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86804 * 119.99390 * 2 1 4 4 H 1.48503 * 109.47076 * 269.99810 * 3 2 1 5 5 H 1.48501 * 109.47305 * 29.99737 * 3 2 1 6 6 H 1.48507 * 109.47092 * 150.00055 * 3 2 1 7 7 C 1.39860 * 120.00699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00174 * 197.95663 * 7 2 1 9 9 C 1.41142 * 119.99694 * 17.94961 * 7 2 1 10 10 C 1.40890 * 120.15078 * 204.60270 * 9 7 2 11 11 C 1.36345 * 119.83090 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.16092 * 0.02562 * 11 10 9 13 13 N 1.38859 * 119.83747 * 179.97438 * 12 11 10 14 14 C 1.46503 * 119.99453 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.47182 * 324.99301 * 14 13 12 16 16 C 1.50697 * 109.47333 * 84.99648 * 14 13 12 17 17 O 1.21278 * 120.00174 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99945 * 179.97438 * 16 14 13 19 19 C 1.46502 * 120.00134 * 180.02562 * 18 16 14 20 20 C 1.53002 * 117.49657 * 223.62105 * 19 18 16 21 21 C 1.52993 * 117.49942 * 155.00137 * 19 18 16 22 22 C 1.50706 * 109.46829 * 204.99939 * 14 13 12 23 23 C 1.38248 * 119.96846 * 319.72294 * 22 14 13 24 24 C 1.38204 * 120.02055 * 179.73188 * 23 22 14 25 25 C 1.38458 * 119.97120 * 0.52047 * 24 23 22 26 26 F 1.35105 * 120.02331 * 179.73175 * 25 24 23 27 27 C 1.38460 * 119.95195 * 359.75333 * 25 24 23 28 28 C 1.38189 * 119.97332 * 359.97438 * 27 25 24 29 29 C 1.39566 * 120.31552 * 0.25203 * 12 11 10 30 30 C 1.36339 * 120.16113 * 359.48642 * 29 12 11 31 31 H 0.96994 * 120.00604 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.08757 * 0.02562 * 10 9 7 33 33 H 1.07995 * 119.92095 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00550 * 359.97438 * 13 12 11 35 35 H 0.97004 * 120.00342 * 359.97438 * 18 16 14 36 36 H 1.08995 * 115.55065 * 9.32145 * 19 18 16 37 37 H 1.08999 * 117.49889 * 0.02562 * 20 19 18 38 38 H 1.08998 * 117.49648 * 145.01834 * 20 19 18 39 39 H 1.09009 * 117.49811 * 214.97756 * 21 19 18 40 40 H 1.08995 * 117.50326 * 359.97438 * 21 19 18 41 41 H 1.07995 * 119.98860 * 359.97438 * 23 22 14 42 42 H 1.08001 * 120.01401 * 180.25450 * 24 23 22 43 43 H 1.08007 * 120.01109 * 179.97438 * 27 25 24 44 44 H 1.08003 * 119.98627 * 180.02562 * 28 27 25 45 45 H 1.08002 * 119.91566 * 179.72166 * 29 12 11 46 46 H 1.08003 * 120.08303 * 180.23515 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 2.4904 2.0466 -1.4001 5 1 1.4402 2.6528 0.7000 6 1 3.5405 1.4404 0.7001 7 6 2.0085 -1.2111 0.0005 8 1 3.0490 -1.2337 0.2889 9 6 1.3544 -2.4039 -0.3756 10 6 1.8270 -3.6471 0.0892 11 6 1.1905 -4.7953 -0.2787 12 6 0.0737 -4.7412 -1.1140 13 7 -0.5692 -5.9149 -1.4849 14 6 -1.7414 -5.8621 -2.3620 15 1 -2.3220 -4.9669 -2.1392 16 6 -1.2917 -5.8242 -3.7998 17 8 -0.1086 -5.8393 -4.0658 18 7 -2.2044 -5.7736 -4.7902 19 6 -1.7673 -5.7373 -6.1881 20 6 -2.4750 -4.7556 -7.1243 21 6 -2.7418 -6.2572 -7.2467 22 6 -2.5944 -7.0835 -2.1344 23 6 -1.9986 -8.3174 -1.9504 24 6 -2.7796 -9.4373 -1.7361 25 6 -4.1595 -9.3248 -1.7165 26 9 -4.9241 -10.4198 -1.5124 27 6 -4.7552 -8.0894 -1.9065 28 6 -3.9720 -6.9701 -2.1151 29 6 -0.3966 -3.5137 -1.5829 30 6 0.2268 -2.3571 -1.2189 31 1 -0.4851 0.8399 -0.0004 32 1 2.6913 -3.6905 0.7353 33 1 1.5518 -5.7491 0.0765 34 1 -0.2417 -6.7696 -1.1639 35 1 -3.1508 -5.7619 -4.5776 36 1 -0.7043 -5.9130 -6.3529 37 1 -3.2655 -4.1366 -6.7001 38 1 -1.8775 -4.2853 -7.9052 39 1 -2.3199 -6.7747 -8.1083 40 1 -3.7080 -6.6266 -6.9033 41 1 -0.9224 -8.4055 -1.9702 42 1 -2.3139 -10.4004 -1.5882 43 1 -5.8315 -8.0007 -1.8918 44 1 -4.4364 -6.0063 -2.2629 45 1 -1.2586 -3.4797 -2.2326 46 1 -0.1405 -1.4075 -1.5795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010172782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = 4.059415 kcal Electronic energy + Delta-G solvation = -30346.301455 eV Core-core repulsion = 26115.993127 eV Total energy + Delta-G solvation = -4230.308328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.14666 -40.44057 -38.93573 -37.88770 -37.00603 -35.03606 -33.36449 -32.73429 -31.46180 -31.00993 -29.48249 -28.52336 -26.59835 -24.33221 -23.27476 -22.73398 -22.58695 -21.82837 -21.01835 -20.61659 -19.71769 -18.04971 -17.35208 -17.21482 -16.94752 -16.66860 -16.21892 -15.83848 -15.47563 -15.06641 -14.96128 -14.61856 -14.41786 -14.21329 -13.86499 -13.79295 -13.60681 -13.22966 -12.86140 -12.69808 -12.58423 -12.52427 -12.12209 -11.81984 -11.80983 -11.61332 -11.41309 -11.34857 -11.19752 -11.03840 -10.86356 -10.69852 -10.53494 -10.02050 -9.69802 -9.41595 -9.29983 -9.25158 -8.85905 -8.75472 -8.56658 -7.48032 -6.65078 -6.43460 -4.03573 0.78544 0.92647 2.68930 2.85854 3.02062 3.12079 3.16064 3.19513 3.26649 3.39214 3.75100 3.96398 4.06150 4.17771 4.41887 4.43626 4.58342 4.60894 4.74621 4.77732 4.80553 4.91715 5.00208 5.03880 5.33921 5.39424 5.59128 5.62420 5.64648 5.79265 5.81080 5.84972 5.85958 5.91791 6.15798 6.23639 6.30252 6.47025 6.55796 6.82290 6.91490 7.20039 7.35408 7.43148 7.54869 7.68346 7.81195 8.15252 8.23185 8.35317 8.45581 8.60154 8.77782 9.06736 9.14747 10.37489 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.002758 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.838067 B =10150.680147 C =11705.019598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.187 4.187 11 C -0.149 4.149 12 C 0.094 3.906 13 N -0.729 5.729 14 C 0.192 3.808 15 H 0.110 0.890 16 C 0.500 3.500 17 O -0.507 6.507 18 N -0.707 5.707 19 C 0.085 3.915 20 C -0.195 4.195 21 C -0.192 4.192 22 C -0.094 4.094 23 C -0.074 4.074 24 C -0.148 4.148 25 C 0.097 3.903 26 F -0.141 7.141 27 C -0.149 4.149 28 C -0.081 4.081 29 C -0.157 4.157 30 C -0.124 4.124 31 H 0.276 0.724 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.389 0.611 35 H 0.397 0.603 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 -14.033 -9.123 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.075 3.925 10 C -0.207 4.207 11 C -0.171 4.171 12 C -0.001 4.001 13 N -0.363 5.363 14 C 0.079 3.921 15 H 0.128 0.872 16 C 0.283 3.717 17 O -0.380 6.380 18 N -0.359 5.359 19 C -0.022 4.022 20 C -0.233 4.233 21 C -0.231 4.231 22 C -0.095 4.095 23 C -0.093 4.093 24 C -0.167 4.167 25 C 0.078 3.922 26 F -0.120 7.120 27 C -0.168 4.168 28 C -0.100 4.100 29 C -0.179 4.179 30 C -0.144 4.144 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.231 0.769 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.099 0.901 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.308 -13.806 -9.312 20.130 hybrid contribution -0.252 0.324 0.153 0.438 sum -11.561 -13.483 -9.160 19.983 Atomic orbital electron populations 1.69849 1.07348 1.28582 1.37682 1.25789 0.94664 1.00877 0.92686 0.86410 0.80507 0.81197 0.79092 1.19550 1.20590 1.18841 1.19387 0.97956 0.91349 1.40978 0.90888 1.17494 0.92300 0.92007 0.90695 1.20540 1.02656 0.92575 1.04943 1.19752 0.97262 0.97121 1.02981 1.17212 0.96018 0.84976 1.01937 1.43524 1.31716 1.06761 1.54328 1.19314 0.88700 0.96682 0.87367 0.87223 1.21767 0.86542 0.75521 0.87858 1.90717 1.16743 1.46782 1.83720 1.45493 1.09643 1.76190 1.04607 1.21550 0.98278 1.03319 0.79032 1.23411 1.04146 0.92591 1.03182 1.23354 1.01175 0.97098 1.01453 1.19852 0.93816 0.94452 1.01360 1.20881 1.00538 0.91082 0.96779 1.21135 0.91814 1.00388 1.03347 1.17752 0.88972 0.83241 1.02242 1.91504 1.75527 1.52475 1.92458 1.21102 1.01097 0.91174 1.03390 1.20900 0.92298 0.98685 0.98076 1.19982 1.01365 0.92083 1.04455 1.20890 0.98236 0.96346 0.98927 0.91358 0.88953 0.89502 0.77604 0.76890 0.84651 0.88484 0.88080 0.88112 0.88656 0.84729 0.84523 0.84421 0.84445 0.90077 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.33 10.97 55.54 0.61 -20.72 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.36 29.60 -169.99 -5.03 14.32 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.47 -12.73 9.03 -37.87 -0.34 -13.07 16 8 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.08 2.12 5.57 -106.79 -0.60 1.53 16 10 C -0.19 -4.67 9.74 -39.26 -0.38 -5.06 16 11 C -0.15 -3.38 9.82 -39.77 -0.39 -3.77 16 12 C 0.09 2.05 6.55 -83.69 -0.55 1.50 16 13 N -0.73 -12.47 4.68 -54.28 -0.25 -12.73 16 14 C 0.19 2.69 2.28 -70.23 -0.16 2.53 16 15 H 0.11 1.54 6.32 -51.93 -0.33 1.22 16 16 C 0.50 7.58 7.00 -10.99 -0.08 7.50 16 17 O -0.51 -10.02 15.92 5.56 0.09 -9.93 16 18 N -0.71 -8.15 5.47 -53.81 -0.29 -8.44 16 19 C 0.08 0.94 6.43 -67.93 -0.44 0.50 16 20 C -0.19 -1.75 10.46 -26.73 -0.28 -2.03 16 21 C -0.19 -1.55 10.45 -26.74 -0.28 -1.83 16 22 C -0.09 -1.03 4.74 -104.61 -0.50 -1.52 16 23 C -0.07 -0.79 9.04 -39.59 -0.36 -1.15 16 24 C -0.15 -1.42 10.03 -39.51 -0.40 -1.82 16 25 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 26 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 27 C -0.15 -1.28 10.03 -39.52 -0.40 -1.68 16 28 C -0.08 -0.72 9.50 -39.60 -0.38 -1.09 16 29 C -0.16 -3.68 9.06 -39.77 -0.36 -4.04 16 30 C -0.12 -3.27 8.64 -39.27 -0.34 -3.61 16 31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 32 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.39 6.01 6.88 -40.82 -0.28 5.73 16 35 H 0.40 3.46 8.55 -40.82 -0.35 3.11 16 36 H 0.14 1.75 7.40 -51.93 -0.38 1.37 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.13 1.42 6.93 -52.49 -0.36 1.05 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 44 H 0.14 0.91 8.04 -52.48 -0.42 0.48 16 45 H 0.08 1.71 6.14 -52.49 -0.32 1.39 16 46 H 0.12 3.22 6.16 -52.48 -0.32 2.89 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -31.74 393.45 -11.21 -42.95 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.71 Total: 14.64 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -6.59 Total: -24.58 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.06 Total: -41.89 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.74 -11.21 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010172782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.008 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds