Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.52994 * 109.46800 * 176.24681 * 3 2 1 5 5 N 1.46505 * 109.47055 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99949 * 270.00166 * 5 4 3 7 7 C 1.50701 * 109.47346 * 269.99914 * 6 5 4 8 8 H 1.08000 * 119.99579 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00216 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00135 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47398 * 89.99492 * 11 9 7 13 13 H 1.48496 * 109.47210 * 210.00191 * 11 9 7 14 14 H 1.48500 * 109.46877 * 329.99722 * 11 9 7 15 15 C 1.34772 * 119.99864 * 90.00083 * 5 4 3 16 16 O 1.21284 * 119.99927 * 180.02562 * 15 5 4 17 17 C 1.50700 * 120.00396 * 0.02562 * 15 5 4 18 18 S 1.81393 * 109.47310 * 180.02562 * 17 15 5 19 19 C 1.76203 * 103.00261 * 180.02562 * 18 17 15 20 20 C 1.40095 * 119.66751 * 0.22890 * 19 18 17 21 21 C 1.35873 * 120.91218 * 180.28168 * 20 19 18 22 22 C 1.40619 * 119.91735 * 359.74824 * 21 20 19 23 23 C 1.40523 * 121.12765 * 180.02562 * 22 21 20 24 24 C 1.36116 * 119.69604 * 180.02562 * 23 22 21 25 25 C 1.39366 * 121.00513 * 359.97438 * 24 23 22 26 26 C 1.36094 * 120.96359 * 359.97438 * 25 24 23 27 27 C 1.40604 * 119.65777 * 0.02562 * 26 25 24 28 28 C 1.37820 * 119.67396 * 179.97438 * 19 18 17 29 29 H 1.08997 * 109.46726 * 56.24535 * 3 2 1 30 30 H 1.09003 * 109.47133 * 296.24842 * 3 2 1 31 31 H 1.09002 * 109.47337 * 59.99965 * 4 3 2 32 32 H 1.09003 * 109.47409 * 299.99992 * 4 3 2 33 33 H 1.09003 * 109.47287 * 29.99485 * 6 5 4 34 34 H 1.09000 * 109.47421 * 149.99792 * 6 5 4 35 35 H 0.97000 * 120.00105 * 180.02562 * 10 9 7 36 36 H 1.09006 * 109.46972 * 60.00020 * 17 15 5 37 37 H 1.09002 * 109.46909 * 300.00034 * 17 15 5 38 38 H 1.07999 * 119.54669 * 0.02723 * 20 19 18 39 39 H 1.08001 * 120.04272 * 179.77320 * 21 20 19 40 40 H 1.08001 * 120.15369 * 0.03963 * 23 22 21 41 41 H 1.08005 * 119.49549 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.51831 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.16819 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.25525 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.4403 -0.0944 5 7 4.5824 1.4409 -0.0950 6 6 5.3153 1.5241 1.1707 7 6 5.5660 2.9704 1.5119 8 1 5.2148 3.7496 0.8518 9 6 6.2446 3.2987 2.6663 10 7 6.6726 2.3498 3.4700 11 14 6.5547 5.0915 3.0897 12 1 5.4250 5.6110 3.9015 13 1 7.8156 5.2059 3.8656 14 1 6.6700 5.8828 1.8384 15 6 5.2557 1.3650 -1.2600 16 8 6.4686 1.3651 -1.2605 17 6 4.5018 1.2801 -2.5621 18 16 5.6800 1.1897 -3.9383 19 6 4.6321 1.0982 -5.3519 20 6 3.2411 1.1148 -5.1862 21 6 2.4095 1.0398 -6.2581 22 6 2.9442 0.9495 -7.5556 23 6 2.1078 0.8713 -8.6821 24 6 2.6566 0.7842 -9.9247 25 6 4.0392 0.7718 -10.0996 26 6 4.8807 0.8469 -9.0326 27 6 4.3505 0.9379 -7.7335 28 6 5.1891 1.0165 -6.6099 29 1 2.9716 -0.5702 -0.8544 30 1 2.9716 -0.4537 0.9217 31 1 2.7537 2.0111 0.7600 32 1 2.7538 1.8946 -1.0161 33 1 4.7268 1.0608 1.9625 34 1 6.2680 1.0033 1.0738 35 1 7.1497 2.5808 4.2823 36 1 3.8750 2.1644 -2.6774 37 1 3.8752 0.3881 -2.5615 38 1 2.8239 1.1839 -4.1925 39 1 1.3393 1.0501 -6.1139 40 1 1.0345 0.8804 -8.5626 41 1 2.0108 0.7247 -10.7883 42 1 4.4489 0.7015 -11.0963 43 1 5.9500 0.8366 -9.1829 44 1 6.2623 1.0080 -6.7304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010439912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = 36.631850 kcal Electronic energy + Delta-G solvation = -26794.616722 eV Core-core repulsion = 22996.100922 eV Total energy + Delta-G solvation = -3798.515800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44803 -39.39192 -36.96798 -36.66728 -35.39349 -33.03668 -32.95926 -31.02213 -30.96729 -29.98274 -29.35629 -26.97737 -24.18616 -23.95709 -23.22935 -22.82328 -22.14173 -18.97893 -18.21688 -17.78257 -17.40894 -16.89972 -16.74433 -16.49152 -15.66239 -15.32793 -15.16071 -14.87672 -14.82267 -14.57425 -14.19731 -13.98821 -13.84667 -13.64947 -13.58027 -13.21906 -12.88568 -12.79290 -12.54732 -12.42965 -12.30275 -12.13360 -11.87293 -11.76085 -11.40852 -11.27380 -11.16273 -11.07128 -10.95692 -10.68543 -10.32116 -10.25417 -10.15028 -9.79420 -9.32078 -9.30330 -8.52868 -8.38614 -8.01131 -7.28963 -6.14670 -4.19752 0.26283 0.70398 1.31301 1.80625 2.34527 2.63337 2.65717 2.72587 3.04724 3.25416 3.33158 3.36554 3.50999 3.85285 4.03980 4.32927 4.36857 4.55079 4.63684 4.74130 4.79365 4.84699 4.86333 4.92002 4.99676 5.04986 5.08238 5.12193 5.16561 5.21269 5.35208 5.48893 5.66624 5.70570 5.72201 5.87225 5.94179 5.94927 6.06243 6.24502 6.29672 6.55162 6.71302 6.77246 7.22691 7.30442 7.48611 7.80491 8.04624 8.09350 8.64524 8.85614 9.46134 10.93484 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.002352 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.665573 B =11901.956608 C =13391.508421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.246 3.754 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.525 3.475 16 O -0.512 6.512 17 C -0.155 4.155 18 S -0.025 6.025 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.085 4.085 22 C -0.062 4.062 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.107 4.107 27 C -0.031 4.031 28 C -0.093 4.093 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 -5.281 -22.336 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.011 4.011 5 N -0.322 5.322 6 C 0.127 3.873 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.309 3.691 16 O -0.387 6.387 17 C -0.306 4.306 18 S 0.221 5.779 19 C -0.207 4.207 20 C -0.151 4.151 21 C -0.105 4.105 22 C -0.064 4.064 23 C -0.119 4.119 24 C -0.143 4.143 25 C -0.133 4.133 26 C -0.126 4.126 27 C -0.033 4.033 28 C -0.120 4.120 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.220 -5.293 -21.857 23.944 hybrid contribution -0.987 0.991 0.298 1.430 sum -9.207 -4.301 -21.559 23.834 Atomic orbital electron populations 1.81219 1.12991 1.08496 1.09225 1.29067 0.95061 0.93218 0.92928 1.19900 0.81463 1.01319 1.06605 1.21360 0.82038 0.93423 1.04311 1.48144 1.04946 1.71045 1.08037 1.19426 0.92663 0.97807 0.77390 1.21383 1.37007 0.92012 1.06602 0.92312 1.24911 0.95176 0.97730 0.96100 1.69911 1.38057 1.32168 1.12944 0.86503 0.77750 0.84764 0.78483 1.20626 1.21043 1.19822 1.19297 0.87782 0.78192 0.83785 1.90755 1.13115 1.48742 1.86072 1.24056 1.02698 1.07030 0.96808 1.86375 1.08162 1.90470 0.92889 1.22169 0.96807 1.03245 0.98521 1.20926 0.91992 1.02482 0.99653 1.20930 0.99667 0.98568 0.91344 1.18086 0.92721 1.01828 0.93793 1.21028 0.99341 0.99489 0.92020 1.20831 0.95206 1.00949 0.97318 1.20851 0.93549 0.99920 0.98946 1.21050 1.00012 1.00114 0.91415 1.17965 0.92425 0.99462 0.93458 1.20789 0.99504 1.01931 0.89743 0.87650 0.86224 0.88324 0.90756 0.94407 0.93325 0.92578 0.86839 0.87083 0.85739 0.85311 0.85678 0.86105 0.86014 0.85432 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.16 18.54 42.15 0.78 -5.37 16 2 C 0.22 2.41 15.43 -20.76 -0.32 2.09 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.12 1.40 5.17 -4.04 -0.02 1.38 16 5 N -0.59 -10.19 2.46 -175.06 -0.43 -10.62 16 6 C 0.25 5.59 5.16 -5.19 -0.03 5.57 16 7 C -0.53 -13.81 9.39 -34.44 -0.32 -14.13 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 11 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.53 9.26 7.69 -10.99 -0.08 9.18 16 16 O -0.51 -11.54 15.44 5.55 0.09 -11.45 16 17 C -0.15 -1.94 3.35 36.01 0.12 -1.82 16 18 S -0.02 -0.34 21.04 -107.50 -2.26 -2.61 16 19 C -0.09 -1.12 6.10 -39.04 -0.24 -1.36 16 20 C -0.13 -1.34 9.26 -39.73 -0.37 -1.71 16 21 C -0.09 -0.82 9.74 -39.53 -0.39 -1.20 16 22 C -0.06 -0.64 5.74 -106.79 -0.61 -1.25 16 23 C -0.10 -0.84 9.76 -39.48 -0.39 -1.23 16 24 C -0.12 -0.94 9.95 -39.92 -0.40 -1.34 16 25 C -0.11 -0.88 9.95 -39.93 -0.40 -1.28 16 26 C -0.11 -0.95 9.77 -39.46 -0.39 -1.33 16 27 C -0.03 -0.33 5.74 -106.84 -0.61 -0.95 16 28 C -0.09 -1.05 9.53 -38.91 -0.37 -1.42 16 29 H 0.11 0.79 7.22 -51.93 -0.38 0.41 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.29 8.07 -51.93 -0.42 0.88 16 32 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 33 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.11 1.22 6.97 -51.92 -0.36 0.86 16 37 H 0.11 1.05 6.78 -51.92 -0.35 0.69 16 38 H 0.12 1.08 5.79 -52.49 -0.30 0.78 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -33.25 394.22 -10.71 -43.96 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.46 Total: -1.67 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -5.08 Total: -9.83 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 1.09 Total: -40.25 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.26 Total: -2.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.25 -10.71 -43.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010439912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.589 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds