Wall clock time and date at job start Tue Mar 31 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.36667 * 119.77519 * 90.00487 * 6 5 4 8 8 S 1.76201 * 118.47024 * 0.02562 * 7 6 5 9 9 C 1.76200 * 99.99960 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00058 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99762 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00235 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99705 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.46968 * 89.99880 * 13 11 9 15 15 H 1.48503 * 109.46836 * 209.99730 * 13 11 9 16 16 H 1.48493 * 109.46893 * 329.99666 * 13 11 9 17 17 N 1.30965 * 123.06246 * 179.97438 * 7 6 5 18 18 C 1.34761 * 121.62733 * 359.97438 * 17 7 6 19 19 C 1.39813 * 121.56511 * 180.02562 * 18 17 7 20 20 C 1.37768 * 119.53695 * 179.97438 * 19 18 17 21 21 Cl 1.73601 * 119.60167 * 180.02562 * 20 19 18 22 22 C 1.39061 * 120.79662 * 0.02562 * 20 19 18 23 23 C 1.36714 * 120.72320 * 359.97438 * 22 20 19 24 24 C 1.39384 * 119.68612 * 359.97438 * 23 22 20 25 25 C 1.35329 * 119.77867 * 269.72721 * 6 5 4 26 26 O 1.21731 * 121.25086 * 0.02562 * 25 6 5 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 29 29 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 30 30 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 33 33 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 36 36 H 0.96997 * 120.00259 * 180.02562 * 12 11 9 37 37 H 1.07998 * 120.23528 * 359.95813 * 19 18 17 38 38 H 1.08003 * 119.63750 * 180.02562 * 22 20 19 39 39 H 1.08001 * 120.15759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 0.0000 7 6 6.2947 2.4125 -1.1862 8 16 5.3703 2.4859 -2.6845 9 6 6.6806 2.3807 -3.8579 10 1 7.7030 2.2994 -3.5198 11 6 6.3987 2.4032 -5.2168 12 7 5.1535 2.5027 -5.6286 13 14 7.7879 2.2923 -6.4608 14 1 8.0445 0.8674 -6.7904 15 1 7.4067 3.0251 -7.6950 16 1 9.0165 2.8965 -5.8859 17 7 7.5982 2.3097 -1.2613 18 6 8.3672 2.2502 -0.1563 19 6 9.7587 2.1410 -0.2380 20 6 10.5045 2.0839 0.9189 21 17 12.2324 1.9489 0.8195 22 6 9.8900 2.1331 2.1654 23 6 8.5311 2.2398 2.2704 24 6 7.7522 2.3006 1.1161 25 6 6.2887 2.4196 1.1746 26 8 5.7013 2.4712 2.2395 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6435 -0.8892 33 1 3.8568 0.6438 0.8907 34 1 3.8364 3.1227 -0.8904 35 1 3.8359 3.1237 0.8896 36 1 4.9565 2.5181 -6.5782 37 1 10.2454 2.1014 -1.2012 38 1 10.4929 2.0873 3.0603 39 1 8.0633 2.2768 3.2432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011528412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:35 Heat of formation + Delta-G solvation = -50.018673 kcal Electronic energy + Delta-G solvation = -26032.277371 eV Core-core repulsion = 22091.738178 eV Total energy + Delta-G solvation = -3940.539193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10310 -38.53666 -37.88958 -37.04337 -36.37237 -34.59795 -32.95788 -32.03457 -30.74297 -29.66887 -27.26726 -25.96322 -25.46087 -24.61398 -23.34284 -21.74572 -21.61400 -19.24685 -18.53758 -17.78778 -17.04362 -16.23626 -16.14751 -15.78577 -15.64020 -15.20214 -15.05791 -14.92419 -14.59982 -14.39900 -14.07526 -13.71314 -13.41274 -13.22030 -12.86947 -12.37202 -12.29653 -12.23682 -11.99924 -11.77992 -11.52923 -11.35040 -11.31473 -11.18493 -11.09359 -10.94736 -10.87193 -10.46079 -9.87026 -9.73932 -9.68625 -9.54374 -9.23497 -9.14367 -8.72451 -8.19585 -7.07599 -6.75187 -4.50251 0.76264 1.01040 2.10253 2.20224 2.56859 2.85763 2.92718 3.06960 3.10007 3.17048 3.74289 3.78940 4.27368 4.53498 4.61717 4.73655 4.90981 4.94455 4.99757 5.08575 5.18022 5.20649 5.25047 5.32930 5.36066 5.46921 5.48218 5.56979 5.59288 5.63135 6.01176 6.03431 6.16240 6.23089 6.33839 6.38586 6.54046 6.81840 6.99358 7.12207 7.33764 8.02244 8.20007 8.42603 8.78909 10.31625 Molecular weight = 354.06amu Principal moments of inertia in cm(-1) A = 0.006578 B = 0.004546 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4255.330602 B = 6157.852872 C =10014.843644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.135 4.135 5 C 0.098 3.902 6 N -0.532 5.532 7 C 0.329 3.671 8 S 0.190 5.810 9 C -0.541 4.541 10 H 0.120 0.880 11 C 0.079 3.921 12 N -0.867 5.867 13 Si 0.935 3.065 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.263 1.263 17 N -0.541 5.541 18 C 0.218 3.782 19 C -0.127 4.127 20 C 0.020 3.980 21 Cl -0.074 7.074 22 C -0.172 4.172 23 C -0.013 4.013 24 C -0.237 4.237 25 C 0.559 3.441 26 O -0.530 6.530 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.279 0.721 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -0.446 9.510 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.009 4.009 4 C -0.174 4.174 5 C -0.025 4.025 6 N -0.256 5.256 7 C -0.035 4.035 8 S 0.435 5.565 9 C -0.689 4.689 10 H 0.138 0.862 11 C -0.132 4.132 12 N -0.501 5.501 13 Si 0.759 3.241 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.187 1.187 17 N -0.269 5.269 18 C 0.096 3.904 19 C -0.150 4.150 20 C -0.008 4.008 21 Cl -0.046 7.046 22 C -0.193 4.193 23 C -0.033 4.033 24 C -0.247 4.247 25 C 0.352 3.648 26 O -0.407 6.407 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.389 -0.499 8.906 9.234 hybrid contribution 1.675 0.067 0.152 1.684 sum -0.713 -0.432 9.058 9.096 Atomic orbital electron populations 1.22729 0.81128 1.02633 0.99954 1.87883 1.19594 1.27975 1.95431 1.22368 0.93173 0.84809 1.00556 1.21801 0.93699 0.97086 1.04783 1.21736 0.77429 0.98241 1.05115 1.46365 1.08845 1.64383 1.06027 1.26317 0.92617 0.91998 0.92577 1.83593 1.08895 1.76900 0.87114 1.23696 0.96462 1.57628 0.91092 0.86233 1.25214 0.97279 0.92753 0.97995 1.69883 1.18290 1.44481 1.17398 0.85872 0.80632 0.78921 0.78633 1.19664 1.20524 1.18718 1.69084 1.01065 1.29912 1.26873 1.18650 0.93323 0.90562 0.87850 1.20588 0.91281 1.05171 0.97916 1.20889 0.84087 1.01004 0.94828 1.98357 1.11275 1.96210 1.98710 1.20475 0.94510 1.08454 0.95910 1.20520 0.92360 0.92769 0.97634 1.20516 0.92643 1.16067 0.95449 1.18284 0.87553 0.76068 0.82913 1.90786 1.70798 1.50866 1.28227 0.89768 0.94236 0.93889 0.93139 0.92419 0.89489 0.90594 0.88070 0.88353 0.91099 0.83836 0.84983 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.33 10.70 -35.23 -0.38 -5.70 16 3 C 0.07 0.85 5.94 37.16 0.22 1.07 16 4 C -0.14 -1.97 5.91 -26.73 -0.16 -2.13 16 5 C 0.10 1.47 4.89 -4.04 -0.02 1.45 16 6 N -0.53 -9.73 2.63 -117.39 -0.31 -10.04 16 7 C 0.33 6.73 7.77 -88.49 -0.69 6.04 16 8 S 0.19 4.08 19.41 -107.50 -2.09 2.00 16 9 C -0.54 -13.35 9.23 30.94 0.29 -13.07 16 10 H 0.12 3.02 6.48 -52.49 -0.34 2.68 16 11 C 0.08 1.92 5.49 -17.48 -0.10 1.83 16 12 N -0.87 -21.82 13.22 55.49 0.73 -21.08 16 13 Si 0.93 19.34 29.55 -169.99 -5.02 14.31 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 N -0.54 -11.58 8.28 -10.89 -0.09 -11.67 16 18 C 0.22 4.21 6.62 -84.78 -0.56 3.65 16 19 C -0.13 -2.17 9.80 -39.16 -0.38 -2.55 16 20 C 0.02 0.30 6.31 -39.45 -0.25 0.05 16 21 Cl -0.07 -0.96 28.93 -51.86 -1.50 -2.46 16 22 C -0.17 -2.38 9.74 -39.83 -0.39 -2.76 16 23 C -0.01 -0.20 9.62 -39.71 -0.38 -0.58 16 24 C -0.24 -4.33 5.90 -104.74 -0.62 -4.95 16 25 C 0.56 10.59 7.66 -12.49 -0.10 10.50 16 26 O -0.53 -10.38 16.30 5.16 0.08 -10.29 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.44 6.48 -51.93 -0.34 1.10 16 35 H 0.10 1.36 7.46 -51.93 -0.39 0.97 16 36 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.14 2.39 8.06 -52.49 -0.42 1.96 16 38 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.14 1.89 7.81 -52.49 -0.41 1.48 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -27.74 365.79 -9.49 -37.22 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.41 Total: 2.24 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.02 Total: -0.04 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.33 Total: -42.79 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.29 Total: -16.00 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -2.09 Total: 2.00 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.74 -9.49 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011528412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.798 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds