Wall clock time and date at job start Tue Mar 31 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40228 * 120.48520 * 12.81349 * 3 2 1 5 5 C 1.50696 * 120.69522 * 0.02562 * 4 3 2 6 6 F 1.39899 * 109.47510 * 180.02562 * 5 4 3 7 7 F 1.39904 * 109.47042 * 300.02555 * 5 4 3 8 8 F 1.39912 * 109.46880 * 60.01957 * 5 4 3 9 9 C 1.36903 * 118.61572 * 180.02562 * 4 3 2 10 10 C 1.39836 * 119.54433 * 0.02562 * 9 4 3 11 11 C 1.47429 * 119.51865 * 179.97438 * 10 9 4 12 12 C 1.36190 * 125.94898 * 179.97438 * 11 10 9 13 13 C 1.40726 * 106.72721 * 179.72836 * 12 11 10 14 14 C 1.34887 * 107.05966 * 0.41146 * 13 12 11 15 15 O 1.34189 * 108.70740 * 359.58300 * 14 13 12 16 16 N 1.32998 * 120.96056 * 0.24819 * 10 9 4 17 17 C 1.32292 * 121.48982 * 359.48179 * 16 10 9 18 18 S 1.76202 * 119.82077 * 180.26402 * 17 16 10 19 19 C 1.80994 * 100.00052 * 0.25326 * 18 17 16 20 20 C 1.50696 * 109.47124 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99966 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00175 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00156 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99999 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47044 * 89.99872 * 24 22 20 26 26 H 1.48503 * 109.47267 * 210.00017 * 24 22 20 27 27 H 1.48496 * 109.47246 * 330.00137 * 24 22 20 28 28 H 1.07999 * 120.23149 * 179.97438 * 9 4 3 29 29 H 1.08001 * 126.63590 * 0.02562 * 12 11 10 30 30 H 1.07996 * 126.46535 * 180.26748 * 13 12 11 31 31 H 1.08002 * 125.64802 * 179.85503 * 14 13 12 32 32 H 1.09002 * 109.47294 * 299.99993 * 19 18 17 33 33 H 1.08998 * 109.47460 * 59.99649 * 19 18 17 34 34 H 0.96995 * 120.00540 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2799 -1.1774 -0.2680 5 6 2.5540 -2.4650 -0.5614 6 9 3.4852 -3.4832 -0.7923 7 9 1.7507 -2.8070 0.5318 8 9 1.7521 -2.3002 -1.6959 9 6 4.6482 -1.1333 -0.2576 10 6 5.2971 0.0743 0.0181 11 6 6.7706 0.1209 0.0298 12 6 7.5338 1.2207 0.2805 13 6 8.8770 0.8098 0.1945 14 6 8.8701 -0.5042 -0.1102 15 8 7.5969 -0.9173 -0.2054 16 7 4.6044 1.1801 0.2753 17 6 3.2815 1.1836 0.2705 18 16 2.4080 2.6756 0.6105 19 6 3.8001 3.8032 0.8681 20 6 3.2786 5.1815 1.1829 21 1 2.2141 5.3599 1.2232 22 6 4.1603 6.2150 1.4185 23 7 3.7051 7.4180 1.6927 24 14 6.0013 5.9066 1.3481 25 1 6.4890 6.1361 -0.0357 26 1 6.6945 6.8344 2.2775 27 1 6.2838 4.5043 1.7463 28 1 5.2225 -2.0253 -0.4601 29 1 7.1771 2.2147 0.5067 30 1 9.7486 1.4301 0.3421 31 1 9.7445 -1.1225 -0.2498 32 1 4.4077 3.4463 1.6997 33 1 4.4083 3.8420 -0.0356 34 1 4.3253 8.1453 1.8581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012422059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:20 Heat of formation + Delta-G solvation = -63.073279 kcal Electronic energy + Delta-G solvation = -27851.368947 eV Core-core repulsion = 23235.006679 eV Total energy + Delta-G solvation = -4616.362268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.039 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.51836 -48.03528 -47.95227 -42.82531 -40.55621 -36.76263 -34.15939 -33.25394 -33.14877 -32.75077 -29.64068 -29.26547 -27.23233 -25.18557 -23.60856 -22.67212 -21.75120 -21.16451 -19.82710 -18.97707 -18.85584 -18.83189 -17.47446 -17.16343 -16.79914 -16.45491 -16.39727 -15.31102 -15.12547 -14.76495 -14.66116 -14.48608 -14.37878 -14.27969 -14.09951 -14.06513 -13.76365 -13.37112 -13.20264 -13.15036 -13.03111 -12.90560 -12.84362 -12.66499 -12.56523 -12.40121 -11.09020 -11.00643 -10.73128 -10.46900 -10.39243 -10.11744 -10.07264 -9.93968 -9.50929 -8.85616 -8.50164 -7.38195 -6.32789 -4.38849 -0.25490 0.44088 1.44408 1.58348 2.14537 2.30371 2.30619 2.48355 2.88992 2.96728 3.14465 3.19029 3.22467 3.23925 3.38657 3.51400 3.57135 4.01557 4.09989 4.19441 4.48108 4.54049 4.63445 4.77739 4.83677 4.98489 4.99405 5.25374 5.49774 5.65546 5.79353 5.84082 6.22711 6.48283 6.52018 6.72192 7.18728 7.22543 7.34746 8.09120 8.64284 9.21217 10.78502 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.009009 B = 0.004508 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.421585 B = 6209.361151 C = 9136.972508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C 0.244 3.756 3 C -0.039 4.039 4 C -0.070 4.070 5 C 0.510 3.490 6 F -0.167 7.167 7 F -0.166 7.166 8 F -0.166 7.166 9 C -0.141 4.141 10 C 0.264 3.736 11 C -0.001 4.001 12 C -0.128 4.128 13 C -0.219 4.219 14 C -0.013 4.013 15 O -0.166 6.166 16 N -0.451 5.451 17 C 0.176 3.824 18 S -0.010 6.010 19 C 0.025 3.975 20 C -0.531 4.531 21 H 0.084 0.916 22 C 0.087 3.913 23 N -0.885 5.885 24 Si 0.875 3.125 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.258 1.258 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.211 0.789 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 -20.109 -4.562 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.045 5.045 2 C -0.073 4.073 3 C -0.054 4.054 4 C -0.083 4.083 5 C 0.455 3.545 6 F -0.148 7.148 7 F -0.147 7.147 8 F -0.147 7.147 9 C -0.166 4.166 10 C 0.121 3.879 11 C -0.051 4.051 12 C -0.148 4.148 13 C -0.238 4.238 14 C -0.082 4.082 15 O -0.062 6.062 16 N -0.165 5.165 17 C -0.075 4.075 18 S 0.240 5.760 19 C -0.123 4.123 20 C -0.571 4.571 21 H 0.102 0.898 22 C -0.119 4.119 23 N -0.521 5.521 24 Si 0.701 3.299 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.183 1.183 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.227 0.773 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.971 -19.010 -4.301 20.700 hybrid contribution 2.439 -0.988 -0.247 2.643 sum 9.410 -19.998 -4.548 22.565 Atomic orbital electron populations 1.81202 1.11035 1.05400 1.06871 1.24863 0.91861 0.95425 0.95138 1.16079 0.86003 0.93478 1.09815 1.19851 0.94722 0.91677 1.02011 1.18030 0.77446 0.83898 0.75079 1.93203 1.65253 1.61928 1.94455 1.93273 1.74358 1.93047 1.54057 1.93275 1.74436 1.95506 1.51517 1.21400 0.92389 1.00271 1.02508 1.18349 0.89018 0.88504 0.92013 1.19416 0.88291 0.86442 1.10994 1.22177 0.92281 1.00002 1.00387 1.21930 0.98167 0.95829 1.07920 1.24304 0.84408 0.96135 1.03392 1.84007 1.16273 1.36193 1.69687 1.68250 1.05851 1.27438 1.14919 1.23995 0.91413 0.98393 0.93671 1.86305 1.14338 0.95431 1.79961 1.21788 0.92644 0.96450 1.01419 1.20414 0.95942 0.89515 1.51181 0.89814 1.24800 0.99017 0.94469 0.93630 1.69849 1.35588 1.00756 1.45913 0.86837 0.85123 0.79189 0.78801 1.19619 1.20743 1.18268 0.81978 0.81963 0.82637 0.77271 0.92550 0.93045 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -6.33 18.54 41.84 0.78 -5.56 16 2 C 0.24 3.89 12.35 -22.47 -0.28 3.61 16 3 C -0.04 -0.57 5.77 -106.27 -0.61 -1.19 16 4 C -0.07 -0.88 5.39 -104.36 -0.56 -1.44 16 5 C 0.51 5.94 2.91 36.00 0.10 6.05 16 6 F -0.17 -1.69 16.04 2.25 0.04 -1.66 16 7 F -0.17 -2.07 16.61 2.25 0.04 -2.03 16 8 F -0.17 -2.07 16.61 2.25 0.04 -2.03 16 9 C -0.14 -1.60 9.07 -39.47 -0.36 -1.96 16 10 C 0.26 3.56 6.74 -83.02 -0.56 3.00 16 11 C 0.00 -0.02 7.03 -36.58 -0.26 -0.28 16 12 C -0.13 -1.61 10.57 -39.38 -0.42 -2.03 16 13 C -0.22 -2.09 10.88 -39.83 -0.43 -2.52 16 14 C -0.01 -0.10 12.08 29.54 0.36 0.25 16 15 O -0.17 -1.72 10.36 4.76 0.05 -1.67 16 16 N -0.45 -7.25 8.80 -8.33 -0.07 -7.33 16 17 C 0.18 2.92 7.01 -16.40 -0.12 2.81 16 18 S -0.01 -0.19 20.97 -107.50 -2.25 -2.45 16 19 C 0.02 0.55 3.66 36.00 0.13 0.68 16 20 C -0.53 -14.08 9.68 -34.44 -0.33 -14.41 16 21 H 0.08 2.43 7.95 -52.48 -0.42 2.01 16 22 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 23 N -0.88 -25.46 13.96 55.43 0.77 -24.69 16 24 Si 0.87 19.57 27.47 -169.99 -4.67 14.90 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 28 H 0.16 1.43 7.02 -52.49 -0.37 1.06 16 29 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.21 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.06 1.24 7.18 -51.91 -0.37 0.87 16 33 H 0.05 1.11 7.55 -51.92 -0.39 0.72 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -29.06 340.91 -5.57 -34.63 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -1.99 Total: -2.08 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.43 Total: -5.18 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 1.48 Total: -37.57 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: 0.05 Total: -1.67 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.11 Total: -5.72 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.25 Total: -2.45 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.06 -5.57 -34.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012422059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.445 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds