Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35986 * 116.99755 * 2 1 4 4 C 1.38554 * 120.08126 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.01020 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.18164 * 359.97402 * 5 4 3 7 7 C 1.50706 * 119.91397 * 180.02562 * 6 5 4 8 8 C 1.38199 * 120.16601 * 359.76922 * 6 5 4 9 9 C 1.38726 * 119.98054 * 0.51007 * 8 6 5 10 10 N 1.40122 * 120.08783 * 179.74170 * 9 8 6 11 11 C 1.34773 * 119.99933 * 325.63668 * 10 9 8 12 12 O 1.21290 * 120.00409 * 3.82889 * 11 10 9 13 13 C 1.50703 * 120.00116 * 183.82789 * 11 10 9 14 14 H 1.09007 * 109.46819 * 300.00168 * 13 11 10 15 15 C 1.53005 * 109.46951 * 59.99860 * 13 11 10 16 16 N 1.46500 * 109.47158 * 180.02562 * 13 11 10 17 17 C 1.38852 * 119.99907 * 155.00384 * 16 13 11 18 18 C 1.39575 * 119.84513 * 359.72055 * 17 16 13 19 19 C 1.36334 * 120.16112 * 179.72069 * 18 17 16 20 20 C 1.40884 * 119.84041 * 0.55188 * 19 18 17 21 21 C 1.41132 * 120.15963 * 179.69753 * 20 19 18 22 22 H 1.08003 * 120.00371 * 214.72767 * 21 20 19 23 23 C 1.39865 * 119.99916 * 34.72624 * 21 20 19 24 24 N 1.30903 * 120.00098 * 355.79142 * 23 21 20 25 25 Si 1.86800 * 119.99921 * 175.79232 * 23 21 20 26 26 H 1.48496 * 109.47216 * 90.00156 * 25 23 21 27 27 H 1.48503 * 109.47081 * 210.00225 * 25 23 21 28 28 H 1.48501 * 109.47230 * 330.00007 * 25 23 21 29 29 C 1.40891 * 119.68721 * 359.72533 * 20 19 18 30 30 C 1.36344 * 119.83530 * 359.97438 * 29 20 19 31 31 H 1.08998 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46685 * 299.99841 * 1 2 3 33 33 H 1.08993 * 109.47012 * 60.00247 * 1 2 3 34 34 H 1.08000 * 119.99376 * 0.02562 * 4 3 2 35 35 H 1.07998 * 119.90413 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46866 * 90.00320 * 7 6 5 37 37 H 1.09000 * 109.47016 * 209.99761 * 7 6 5 38 38 H 1.08994 * 109.47512 * 330.00104 * 7 6 5 39 39 H 1.07993 * 120.01005 * 180.25237 * 8 6 5 40 40 H 0.96999 * 120.00135 * 145.36007 * 10 9 8 41 41 H 1.09002 * 109.47080 * 300.00014 * 15 13 11 42 42 H 1.08999 * 109.46777 * 60.00467 * 15 13 11 43 43 H 1.09000 * 109.46479 * 180.02562 * 15 13 11 44 44 H 0.97000 * 120.00405 * 334.99434 * 16 13 11 45 45 H 1.08002 * 119.91547 * 359.97438 * 18 17 16 46 46 H 1.08006 * 120.08148 * 180.28078 * 19 18 17 47 47 H 0.96995 * 120.00262 * 179.97438 * 24 23 21 48 48 H 1.07994 * 120.08265 * 179.97438 * 29 20 19 49 49 H 1.07993 * 119.91665 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3031 3.6808 0.0016 7 6 3.9826 5.0260 0.0028 8 6 4.0614 2.5255 0.0064 9 6 3.4372 1.2865 0.0001 10 7 4.2039 0.1137 -0.0005 11 6 5.3817 0.0789 -0.6547 12 8 5.8113 1.0820 -1.1842 13 6 6.1651 -1.2064 -0.7284 14 1 6.4138 -1.5386 0.2796 15 6 5.3235 -2.2774 -1.4252 16 7 7.3985 -0.9838 -1.4869 17 6 8.5015 -1.7998 -1.2738 18 6 8.4335 -2.8276 -0.3319 19 6 9.5107 -3.6363 -0.1215 20 6 10.6985 -3.4253 -0.8492 21 6 11.8198 -4.2544 -0.6322 22 1 12.8163 -3.8434 -0.6985 23 6 11.6405 -5.6085 -0.3313 24 7 10.4335 -6.0888 -0.1696 25 14 13.1233 -6.7315 -0.1600 26 1 13.5819 -6.7340 1.2524 27 1 12.7483 -8.1113 -0.5612 28 1 14.2187 -6.2421 -1.0352 29 6 10.7619 -2.3822 -1.7942 30 6 9.6748 -1.5851 -1.9986 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2147 2.3196 0.0014 35 1 1.3338 4.5112 0.0019 36 1 4.1461 5.3495 1.0308 37 1 4.9410 4.9493 -0.5107 38 1 3.3523 5.7519 -0.5107 39 1 5.1396 2.5870 0.0110 40 1 3.8889 -0.6719 0.4732 41 1 4.4060 -2.4429 -0.8604 42 1 5.0748 -1.9452 -2.4331 43 1 5.8900 -3.2071 -1.4780 44 1 7.4447 -0.2663 -2.1381 45 1 7.5239 -2.9852 0.2287 46 1 9.4551 -4.4341 0.6044 47 1 10.3091 -7.0280 0.0387 48 1 11.6693 -2.2145 -2.3552 49 1 9.7220 -0.7850 -2.7223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012543585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = -19.871748 kcal Electronic energy + Delta-G solvation = -30215.289940 eV Core-core repulsion = 26107.404184 eV Total energy + Delta-G solvation = -4107.885756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.05885 -39.69656 -38.06106 -37.67626 -35.35974 -35.02061 -33.16371 -32.00303 -31.00685 -29.67766 -29.41804 -28.19614 -27.93666 -26.19966 -24.98611 -24.03225 -22.64471 -21.59766 -21.20535 -20.44135 -19.62299 -18.55490 -17.55171 -17.21726 -17.09781 -16.37682 -16.12714 -15.66905 -15.23787 -15.08523 -14.82079 -14.62657 -14.35025 -13.98861 -13.90677 -13.86533 -13.55797 -13.21560 -12.70464 -12.63796 -12.55956 -12.41490 -12.26830 -12.16311 -11.97195 -11.83555 -11.71380 -11.51557 -11.41291 -11.21057 -11.15120 -11.05854 -10.80552 -10.48158 -10.46309 -9.73369 -9.67506 -9.41090 -9.08604 -8.74795 -8.59044 -8.00052 -7.49327 -6.44889 -6.33725 -4.08461 1.02803 1.14034 2.50075 2.77786 2.93233 2.98073 3.10893 3.18124 3.21347 3.35574 3.51956 4.11174 4.23800 4.48263 4.55162 4.60832 4.74853 4.79223 4.84856 4.90531 5.07325 5.12736 5.14809 5.22835 5.30979 5.43484 5.44345 5.65692 5.69900 5.72916 5.79059 5.87880 5.93866 5.98325 6.23037 6.24672 6.32440 6.36615 6.42895 6.58592 6.86907 6.92481 7.07388 7.20837 7.23319 7.41420 7.54062 7.73300 7.87714 8.01429 8.17790 8.29505 8.49006 8.69972 8.81750 9.11601 9.16749 10.49768 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.001925 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.645773 B =14544.384166 C =15554.070322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.095 3.905 4 C -0.188 4.188 5 C -0.099 4.099 6 C -0.104 4.104 7 C -0.110 4.110 8 C -0.086 4.086 9 C 0.127 3.873 10 N -0.665 5.665 11 C 0.514 3.486 12 O -0.518 6.518 13 C 0.148 3.852 14 H 0.102 0.898 15 C -0.164 4.164 16 N -0.742 5.742 17 C 0.107 3.893 18 C -0.175 4.175 19 C -0.110 4.110 20 C 0.066 3.934 21 C -0.466 4.466 22 H 0.070 0.930 23 C 0.068 3.932 24 N -0.826 5.826 25 Si 0.910 3.090 26 H -0.273 1.273 27 H -0.280 1.280 28 H -0.266 1.266 29 C -0.172 4.172 30 C -0.164 4.164 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.148 0.852 40 H 0.415 0.585 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.395 0.605 45 H 0.089 0.911 46 H 0.130 0.870 47 H 0.273 0.727 48 H 0.093 0.907 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 13.679 2.632 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.048 3.952 4 C -0.207 4.207 5 C -0.118 4.118 6 C -0.105 4.105 7 C -0.166 4.166 8 C -0.106 4.106 9 C 0.032 3.968 10 N -0.311 5.311 11 C 0.301 3.699 12 O -0.393 6.393 13 C 0.037 3.963 14 H 0.119 0.881 15 C -0.224 4.224 16 N -0.378 5.378 17 C 0.010 3.990 18 C -0.197 4.197 19 C -0.130 4.130 20 C 0.063 3.937 21 C -0.499 4.499 22 H 0.088 0.912 23 C -0.144 4.144 24 N -0.456 5.456 25 Si 0.735 3.265 26 H -0.198 1.198 27 H -0.206 1.206 28 H -0.190 1.190 29 C -0.192 4.192 30 C -0.186 4.186 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.165 0.835 40 H 0.251 0.749 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.230 0.770 45 H 0.107 0.893 46 H 0.147 0.853 47 H 0.084 0.916 48 H 0.111 0.889 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.516 13.832 2.395 25.690 hybrid contribution 0.025 -0.687 -0.021 0.687 sum -21.490 13.145 2.374 25.303 Atomic orbital electron populations 1.23042 0.78200 1.04013 1.01267 1.86034 1.21488 1.26430 1.89180 1.18763 0.90455 0.85000 1.01011 1.21003 0.99748 0.91771 1.08226 1.20793 0.93908 0.96954 1.00157 1.19755 0.93367 0.95424 1.01956 1.20730 1.00659 0.93009 1.02245 1.21119 1.01438 0.89357 0.98734 1.17074 0.86702 0.87306 1.05730 1.43374 1.20779 1.13917 1.52990 1.21307 0.80421 0.91368 0.76779 1.90655 1.67785 1.35652 1.45171 1.20394 0.86672 0.90534 0.98661 0.88061 1.22291 0.99211 0.99950 1.00914 1.43674 1.09653 1.38022 1.46472 1.17384 0.86949 0.94464 1.00224 1.20176 0.99279 0.98681 1.01590 1.21214 0.93033 0.98663 1.00075 1.17549 0.93727 0.91746 0.90691 1.19315 0.93795 0.93325 1.43457 0.91202 1.25749 0.96605 0.98942 0.93092 1.69759 1.21756 1.15057 1.39016 0.86296 0.81992 0.79099 0.79067 1.19829 1.20571 1.19014 1.20699 0.97092 1.00463 1.00936 1.19827 0.93462 1.02318 1.03009 0.88147 0.92687 0.92684 0.85182 0.85789 0.91291 0.91277 0.91655 0.83455 0.74880 0.92206 0.92256 0.90160 0.76980 0.89271 0.85283 0.91632 0.88865 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.05 10.05 -19.70 -0.20 -3.25 16 3 C 0.09 1.02 6.70 -39.07 -0.26 0.75 16 4 C -0.19 -1.69 9.04 -39.46 -0.36 -2.04 16 5 C -0.10 -0.89 9.69 -39.57 -0.38 -1.27 16 6 C -0.10 -1.08 5.88 -104.62 -0.62 -1.70 16 7 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 8 C -0.09 -1.09 8.35 -39.42 -0.33 -1.42 16 9 C 0.13 1.57 6.33 -83.49 -0.53 1.04 16 10 N -0.66 -7.96 5.06 -9.75 -0.05 -8.01 16 11 C 0.51 7.41 7.07 -10.99 -0.08 7.33 16 12 O -0.52 -8.86 13.26 5.55 0.07 -8.78 16 13 C 0.15 2.20 2.67 -69.08 -0.18 2.02 16 14 H 0.10 1.48 6.44 -51.93 -0.33 1.14 16 15 C -0.16 -2.17 9.32 37.16 0.35 -1.83 16 16 N -0.74 -13.43 5.09 -53.15 -0.27 -13.70 16 17 C 0.11 2.30 6.65 -83.69 -0.56 1.75 16 18 C -0.18 -3.97 8.76 -39.77 -0.35 -4.31 16 19 C -0.11 -2.83 8.61 -39.27 -0.34 -3.17 16 20 C 0.07 1.77 5.55 -106.79 -0.59 1.18 16 21 C -0.47 -12.71 9.02 -37.88 -0.34 -13.05 16 22 H 0.07 1.84 7.85 -52.48 -0.41 1.43 16 23 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 24 N -0.83 -21.95 10.60 55.54 0.59 -21.37 16 25 Si 0.91 19.61 29.56 -169.99 -5.03 14.59 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 29 C -0.17 -4.26 9.74 -39.26 -0.38 -4.64 16 30 C -0.16 -3.72 9.82 -39.77 -0.39 -4.11 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 33 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 34 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.15 2.08 6.19 -52.49 -0.33 1.76 16 40 H 0.41 4.04 8.11 -40.82 -0.33 3.71 16 41 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 44 H 0.40 7.14 7.79 -40.82 -0.32 6.82 16 45 H 0.09 1.77 6.06 -52.49 -0.32 1.46 16 46 H 0.13 3.48 6.13 -52.48 -0.32 3.16 16 47 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 48 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 49 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -30.94 401.96 -9.70 -40.64 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -6.79 Total: 15.01 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -4.08 Total: -21.18 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.27 Total: -43.07 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.12 Total: -12.03 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.94 -9.70 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012543585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.766 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds