Wall clock time and date at job start Tue Mar 31 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48498 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47481 * 300.00299 * 3 2 1 6 6 H 1.48498 * 109.46622 * 60.00379 * 3 2 1 7 7 C 1.37879 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00291 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00298 * 269.99943 * 10 9 7 12 12 C 1.50696 * 109.47189 * 269.99842 * 11 10 9 13 13 C 1.38675 * 120.42073 * 269.71663 * 12 11 10 14 14 C 1.38622 * 118.42217 * 179.78560 * 13 12 11 15 15 C 1.38230 * 119.15872 * 0.51609 * 14 13 12 16 16 N 1.31855 * 120.76478 * 359.72670 * 15 14 13 17 17 C 1.31881 * 121.72434 * 359.97438 * 16 15 14 18 18 C 1.34780 * 120.00074 * 90.00205 * 10 9 7 19 19 S 1.71203 * 120.00271 * 180.02562 * 18 10 9 20 20 N 1.34776 * 119.99886 * 359.97438 * 18 10 9 21 21 C 1.34780 * 120.00311 * 180.02562 * 20 18 10 22 22 O 1.21524 * 119.99283 * 0.02562 * 21 20 18 23 23 C 1.47769 * 119.99951 * 180.02562 * 21 20 18 24 24 C 1.39615 * 120.14226 * 180.02562 * 23 21 20 25 25 C 1.37948 * 119.84619 * 179.97438 * 24 23 21 26 26 C 1.38369 * 120.14900 * 359.97438 * 25 24 23 27 27 C 1.38367 * 120.30176 * 0.02562 * 26 25 24 28 28 C 1.37945 * 120.14551 * 359.97438 * 27 26 25 29 29 H 0.97001 * 120.00260 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47373 * 60.00411 * 9 7 2 31 31 H 1.09001 * 109.47481 * 300.00521 * 9 7 2 32 32 H 1.09001 * 109.46754 * 30.00212 * 11 10 9 33 33 H 1.09006 * 109.46833 * 149.99654 * 11 10 9 34 34 H 1.07999 * 120.78904 * 0.02605 * 13 12 11 35 35 H 1.07998 * 120.42616 * 180.22565 * 14 13 12 36 36 H 1.07999 * 119.61684 * 179.75392 * 15 14 13 37 37 H 1.07998 * 119.61786 * 180.02562 * 17 16 15 38 38 H 0.96997 * 119.99989 * 0.02562 * 20 18 10 39 39 H 1.07998 * 120.08035 * 359.69992 * 24 23 21 40 40 H 1.08000 * 119.92562 * 180.02562 * 25 24 23 41 41 H 1.07999 * 119.84786 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.92878 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.07609 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 2.6788 -4.1695 -1.2692 12 6 1.7621 -5.2837 -1.7042 13 6 2.0112 -6.5908 -1.3138 14 6 1.1386 -7.5826 -1.7339 15 6 0.0629 -7.2397 -2.5314 16 7 -0.1402 -5.9865 -2.8876 17 6 0.6657 -5.0165 -2.5017 18 6 2.6407 -4.1250 1.1667 19 16 3.7536 -5.4259 1.1667 20 7 2.2032 -3.6124 2.3339 21 6 2.6414 -4.1243 3.5011 22 8 3.4314 -5.0477 3.5011 23 6 2.1612 -3.5627 4.7808 24 6 2.6136 -4.0902 5.9917 25 6 2.1617 -3.5609 7.1827 26 6 1.2626 -2.5091 7.1791 27 6 0.8102 -1.9815 5.9826 28 6 1.2540 -2.5014 4.7844 29 1 -0.4850 0.8400 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.6866 -3.3879 -2.0289 33 1 3.6883 -4.5595 -1.1388 34 1 2.8626 -6.8299 -0.6938 35 1 1.2997 -8.6109 -1.4458 36 1 -0.6194 -8.0070 -2.8662 37 1 0.4669 -4.0017 -2.8132 38 1 1.5729 -2.8751 2.3339 39 1 3.3122 -4.9138 5.9960 40 1 2.5111 -3.9678 8.1201 41 1 0.9117 -2.0987 8.1144 42 1 0.1088 -1.1604 5.9868 43 1 0.8998 -2.0890 3.8512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012651271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:42 Heat of formation + Delta-G solvation = 66.394302 kcal Electronic energy + Delta-G solvation = -28421.368403 eV Core-core repulsion = 24558.717289 eV Total energy + Delta-G solvation = -3862.651114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74777 -39.98408 -38.78024 -37.67055 -34.75230 -33.37948 -32.28421 -31.58120 -31.12363 -30.98263 -28.45555 -26.85066 -24.73183 -23.92244 -23.19829 -22.67192 -22.18456 -20.83342 -20.81665 -18.57504 -17.39584 -17.11799 -16.81069 -16.53900 -15.96316 -15.57679 -15.46699 -15.33408 -14.95539 -14.93218 -14.50756 -14.10587 -13.81873 -13.64026 -13.47664 -13.37938 -12.90613 -12.74230 -12.69416 -12.24847 -12.05739 -11.79911 -11.64939 -11.34401 -11.25034 -11.19400 -11.05719 -10.74091 -10.35760 -10.32526 -10.11176 -9.55960 -9.28216 -9.11425 -9.07466 -8.93801 -8.90518 -8.82220 -7.27579 -6.53505 -6.10237 -4.66935 0.71428 1.23004 1.27088 1.55265 1.64792 2.39486 2.95151 3.02215 3.03193 3.12875 3.17213 3.62321 3.85031 4.05660 4.13978 4.60195 4.63060 4.74447 4.79251 4.83705 5.01722 5.02344 5.07849 5.22345 5.26548 5.38249 5.38877 5.51902 5.67681 5.81194 5.87823 5.93370 5.99392 6.05276 6.19492 6.24996 6.28243 6.32843 6.44802 6.57497 6.62424 6.76184 6.90597 6.93448 7.17251 7.41875 7.53143 7.58332 8.16112 8.16889 8.42337 9.04618 10.51579 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.007070 B = 0.004485 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3959.211731 B = 6241.342015 C = 8934.532455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.220 3.780 10 N -0.524 5.524 11 C 0.153 3.847 12 C -0.154 4.154 13 C -0.047 4.047 14 C -0.184 4.184 15 C 0.094 3.906 16 N -0.493 5.493 17 C 0.114 3.886 18 C 0.544 3.456 19 S -0.605 6.605 20 N -0.638 5.638 21 C 0.535 3.465 22 O -0.414 6.414 23 C -0.132 4.132 24 C -0.058 4.058 25 C -0.130 4.130 26 C -0.096 4.096 27 C -0.125 4.125 28 C -0.084 4.084 29 H 0.271 0.729 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.419 0.581 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -5.386 6.640 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.098 3.902 10 N -0.227 5.227 11 C 0.029 3.971 12 C -0.157 4.157 13 C -0.074 4.074 14 C -0.204 4.204 15 C -0.063 4.063 16 N -0.201 5.201 17 C -0.043 4.043 18 C 0.188 3.812 19 S -0.471 6.471 20 N -0.284 5.284 21 C 0.317 3.683 22 O -0.281 6.281 23 C -0.136 4.136 24 C -0.077 4.077 25 C -0.149 4.149 26 C -0.115 4.115 27 C -0.143 4.143 28 C -0.103 4.103 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.176 0.824 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.261 0.739 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.718 -6.434 6.043 8.856 hybrid contribution -0.132 2.084 0.524 2.153 sum -0.849 -4.350 6.567 7.923 Atomic orbital electron populations 1.69915 1.06057 1.28044 1.47872 1.24945 0.94925 0.99600 0.93842 0.86352 0.80223 0.82442 0.78132 1.19386 1.20428 1.20518 1.21391 0.93915 0.89457 1.54513 0.91300 1.19884 0.87750 0.82852 0.99691 1.47840 1.40789 1.31019 1.03070 1.20631 0.98615 0.94176 0.83692 1.21133 0.98640 0.95751 1.00197 1.22279 0.99037 0.91730 0.94313 1.22180 0.96992 1.00707 1.00536 1.22734 0.95716 0.93486 0.94388 1.67709 1.29013 1.00824 1.22573 1.22790 0.89613 0.98569 0.93333 1.22205 0.87536 0.89868 0.81631 1.92822 1.36494 1.24029 1.93754 1.43157 1.44323 1.35729 1.05238 1.18469 0.82707 0.84072 0.83040 1.91260 1.27532 1.23440 1.85843 1.20022 1.01077 0.99154 0.93309 1.21267 0.97381 0.98396 0.90641 1.21135 0.98421 0.97354 0.97940 1.21386 0.96165 0.95683 0.98228 1.21136 1.00616 1.00481 0.92032 1.21490 0.95116 0.94464 0.99232 0.91966 0.92478 0.94863 0.87961 0.86662 0.82391 0.85147 0.83310 0.82714 0.73894 0.84436 0.85316 0.85634 0.85212 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.51 13.29 55.43 0.74 -20.78 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 18.71 29.54 -169.99 -5.02 13.69 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -12.62 9.39 -34.44 -0.32 -12.94 16 8 H 0.07 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.22 4.51 4.93 -5.20 -0.03 4.48 16 10 N -0.52 -9.81 2.44 -178.47 -0.44 -10.25 16 11 C 0.15 2.53 5.37 -5.20 -0.03 2.51 16 12 C -0.15 -2.44 5.48 -104.48 -0.57 -3.02 16 13 C -0.05 -0.73 9.41 -39.28 -0.37 -1.09 16 14 C -0.18 -2.50 10.11 -39.44 -0.40 -2.90 16 15 C 0.09 1.29 11.18 -17.54 -0.20 1.09 16 16 N -0.49 -7.86 10.36 -13.25 -0.14 -8.00 16 17 C 0.11 1.82 10.86 -17.55 -0.19 1.62 16 18 C 0.54 10.74 7.65 -86.92 -0.66 10.07 16 19 S -0.60 -12.89 22.57 -107.50 -2.43 -15.31 16 20 N -0.64 -11.58 5.05 -13.80 -0.07 -11.65 16 21 C 0.53 9.52 7.70 -12.36 -0.10 9.42 16 22 O -0.41 -8.53 13.10 5.34 0.07 -8.46 16 23 C -0.13 -1.92 5.87 -104.97 -0.62 -2.54 16 24 C -0.06 -0.74 9.60 -39.17 -0.38 -1.11 16 25 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 26 C -0.10 -0.93 10.04 -39.49 -0.40 -1.33 16 27 C -0.12 -1.37 10.03 -39.64 -0.40 -1.76 16 28 C -0.08 -1.11 9.54 -39.18 -0.37 -1.48 16 29 H 0.27 6.31 8.31 -40.82 -0.34 5.98 16 30 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.03 0.70 6.36 -51.93 -0.33 0.37 16 32 H 0.10 1.58 8.02 -51.93 -0.42 1.17 16 33 H 0.12 1.96 6.53 -51.93 -0.34 1.62 16 34 H 0.16 2.64 5.95 -52.49 -0.31 2.32 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.42 7.19 4.46 -40.82 -0.18 7.01 16 39 H 0.14 1.72 7.65 -52.49 -0.40 1.32 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.70 6.41 -52.48 -0.34 1.36 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -29.32 378.23 -11.92 -41.24 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.82 Total: 12.92 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -5.52 Total: 0.90 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.09 Total: -50.67 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.07 Total: -8.46 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 16 Polarization: -12.89 SS G_CDS: -2.43 Total: -15.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.32 -11.92 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012651271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.632 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds