Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86792 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47031 * 239.99804 * 3 2 1 5 5 H 1.48499 * 109.47477 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47500 * 120.00039 * 3 2 1 7 7 C 1.39908 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99545 * 195.52271 * 7 2 1 9 9 C 1.41148 * 120.00520 * 15.52611 * 7 2 1 10 10 C 1.40872 * 120.16600 * 204.44515 * 9 7 2 11 11 C 1.36369 * 119.82538 * 179.69148 * 10 9 7 12 12 C 1.39478 * 120.17340 * 0.60116 * 11 10 9 13 13 N 1.39232 * 119.83997 * 179.69126 * 12 11 10 14 14 C 1.34784 * 119.99872 * 35.96242 * 13 12 11 15 15 O 1.21286 * 119.99600 * 355.50773 * 14 13 12 16 16 C 1.50698 * 120.00349 * 175.50570 * 14 13 12 17 17 H 1.09006 * 109.46101 * 300.00434 * 16 14 13 18 18 C 1.52904 * 109.46114 * 59.97486 * 16 14 13 19 19 C 1.50467 * 109.92627 * 71.44253 * 18 16 14 20 20 O 1.21293 * 119.62334 * 215.19178 * 19 18 16 21 21 N 1.34563 * 120.76098 * 35.17331 * 19 18 16 22 22 C 1.39819 * 120.45766 * 359.21548 * 21 19 18 23 23 C 1.38824 * 120.16705 * 161.51847 * 22 21 19 24 24 C 1.38330 * 119.87039 * 179.97438 * 23 22 21 25 25 F 1.35106 * 119.97615 * 180.02562 * 24 23 22 26 26 C 1.38525 * 120.03971 * 0.02688 * 24 23 22 27 27 C 1.38238 * 120.12273 * 359.97438 * 26 24 23 28 28 C 1.38105 * 120.05828 * 359.97438 * 27 26 24 29 29 C 1.39486 * 120.33267 * 359.67579 * 12 11 10 30 30 C 1.36382 * 120.16557 * 0.02562 * 29 12 11 31 31 H 0.97001 * 119.99765 * 0.02562 * 1 2 3 32 32 H 1.07994 * 120.08253 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.91317 * 180.27478 * 11 10 9 34 34 H 0.97004 * 120.00715 * 215.96252 * 13 12 11 35 35 H 1.08999 * 109.40022 * 191.56487 * 18 16 14 36 36 H 1.08993 * 109.40266 * 311.30300 * 18 16 14 37 37 H 0.96998 * 119.76928 * 179.19824 * 21 19 18 38 38 H 1.07993 * 120.06493 * 359.94816 * 23 22 21 39 39 H 1.08002 * 119.93810 * 179.97438 * 26 24 23 40 40 H 1.08003 * 119.96996 * 180.02562 * 27 26 24 41 41 H 1.08000 * 119.91963 * 180.02562 * 29 12 11 42 42 H 1.07998 * 120.08562 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0965 1.6962 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0586 -1.2287 0.2509 9 6 1.3410 -2.4119 -0.3261 10 6 1.8323 -3.6455 0.1444 11 6 1.1787 -4.8003 -0.1702 12 6 0.0338 -4.7634 -0.9659 13 7 -0.6244 -5.9473 -1.2882 14 6 -0.6933 -6.9469 -0.3867 15 8 -0.1133 -6.8480 0.6739 16 6 -1.4910 -8.1873 -0.6965 17 1 -2.5325 -7.9157 -0.8688 18 6 -0.9253 -8.8572 -1.9492 19 6 0.4071 -9.4835 -1.6385 20 8 1.2794 -9.4862 -2.4813 21 7 0.6423 -10.0402 -0.4363 22 6 -0.3448 -10.0320 0.5539 23 6 -0.2655 -10.9113 1.6253 24 6 -1.2453 -10.8976 2.6017 25 9 -1.1700 -11.7520 3.6456 26 6 -2.3034 -10.0083 2.5099 27 6 -2.3830 -9.1325 1.4433 28 6 -1.4069 -9.1416 0.4665 29 6 -0.4554 -3.5464 -1.4404 30 6 0.1840 -2.3826 -1.1291 31 1 -0.4850 0.8401 -0.0004 32 1 2.7215 -3.6761 0.7564 33 1 1.5516 -5.7465 0.1935 34 1 -1.0334 -6.0527 -2.1614 35 1 -1.6162 -9.6278 -2.2910 36 1 -0.8003 -8.1110 -2.7337 37 1 1.5026 -10.4503 -0.2554 38 1 0.5591 -11.6050 1.6960 39 1 -3.0677 -9.9993 3.2730 40 1 -3.2089 -8.4399 1.3744 41 1 -1.3427 -3.5255 -2.0557 42 1 -0.1962 -1.4410 -1.4968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012776054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = -66.808546 kcal Electronic energy + Delta-G solvation = -30207.071465 eV Core-core repulsion = 25837.856977 eV Total energy + Delta-G solvation = -4369.214488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.117 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.15368 -41.59222 -39.46525 -38.80636 -37.28431 -35.37642 -34.52781 -34.29074 -32.91823 -30.44211 -29.68666 -29.50538 -28.91227 -26.03329 -24.63433 -23.41978 -23.17329 -21.81528 -20.98425 -20.26636 -19.18805 -18.54071 -17.75126 -17.41064 -17.30083 -16.62325 -16.19447 -15.85234 -15.82428 -15.70291 -15.57399 -15.20343 -14.61062 -14.24966 -14.08049 -13.95968 -13.70269 -13.56761 -13.19055 -13.03166 -12.73843 -12.55655 -12.25126 -12.12587 -11.87588 -11.72869 -11.58571 -11.33633 -11.11279 -11.05665 -10.88182 -10.77254 -10.34215 -10.07754 -9.62658 -9.43137 -9.19384 -9.03767 -8.92741 -8.36307 -7.56711 -7.03338 -6.77169 -4.34071 0.74332 0.86408 2.23701 2.48169 2.67151 2.94410 3.04187 3.07474 3.08744 3.18403 3.30989 3.69592 3.84908 3.90424 4.13251 4.17995 4.30040 4.45509 4.59737 4.72597 4.82019 4.84324 5.09104 5.09602 5.26356 5.43333 5.55265 5.64066 5.69057 5.83632 6.00387 6.16622 6.33682 6.42024 6.51678 6.72664 6.81874 6.89469 7.01094 7.15618 7.25713 7.57238 7.68338 7.68604 7.84428 8.00468 8.22329 8.25511 8.55570 8.66944 8.85485 8.96087 10.14348 Molecular weight = 354.12amu Principal moments of inertia in cm(-1) A = 0.016218 B = 0.002407 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.081828 B =11631.742497 C =12301.520183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.218 4.218 11 C -0.073 4.073 12 C -0.013 4.013 13 N -0.645 5.645 14 C 0.496 3.504 15 O -0.515 6.515 16 C -0.065 4.065 17 H 0.124 0.876 18 C -0.134 4.134 19 C 0.524 3.476 20 O -0.516 6.516 21 N -0.659 5.659 22 C 0.206 3.794 23 C -0.192 4.192 24 C 0.133 3.867 25 F -0.136 7.136 26 C -0.175 4.175 27 C -0.039 4.039 28 C -0.107 4.107 29 C -0.110 4.110 30 C -0.155 4.155 31 H 0.281 0.719 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.394 0.606 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.414 0.586 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.381 -18.259 -1.277 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.238 4.238 11 C -0.092 4.092 12 C -0.105 4.105 13 N -0.288 5.288 14 C 0.281 3.719 15 O -0.390 6.390 16 C -0.087 4.087 17 H 0.142 0.858 18 C -0.174 4.174 19 C 0.312 3.688 20 O -0.390 6.390 21 N -0.303 5.303 22 C 0.109 3.891 23 C -0.213 4.213 24 C 0.113 3.887 25 F -0.115 7.115 26 C -0.194 4.194 27 C -0.058 4.058 28 C -0.110 4.110 29 C -0.131 4.131 30 C -0.175 4.175 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.228 0.772 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.252 0.748 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.109 0.891 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.822 -17.952 -1.051 19.610 hybrid contribution 0.459 0.422 0.088 0.629 sum -7.363 -17.530 -0.963 19.038 Atomic orbital electron populations 1.69822 1.07542 1.29308 1.35186 1.25938 0.94800 1.01397 0.92285 0.86322 0.80090 0.80038 0.80026 1.18797 1.20307 1.18971 1.19562 0.97369 0.91019 1.40495 0.90403 1.17675 0.91452 0.92111 0.88351 1.20657 1.03253 0.92727 1.07206 1.20316 0.93341 0.97738 0.97842 1.17129 0.97720 0.83690 1.11972 1.42912 1.55110 1.14791 1.15975 1.20226 0.82540 0.84388 0.84731 1.90726 1.44420 1.79502 1.24370 1.20266 1.02562 0.93077 0.92803 0.85771 1.21771 0.94524 1.02529 0.98544 1.20590 0.90294 0.76963 0.80912 1.90813 1.46190 1.56308 1.45731 1.43551 1.16585 1.57686 1.12470 1.17168 0.88951 0.93971 0.88977 1.20555 1.02011 1.02990 0.95787 1.17307 0.95763 0.90486 0.85178 1.91516 1.96193 1.68366 1.55412 1.21043 0.99403 0.98029 1.00971 1.20664 0.97583 0.96216 0.91329 1.18935 0.96481 0.97225 0.98384 1.20233 0.98904 0.91751 1.02172 1.20966 0.98921 0.96450 1.01174 0.90784 0.88790 0.87903 0.77214 0.86489 0.86594 0.74792 0.84151 0.84264 0.84153 0.89142 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.17 10.82 55.55 0.60 -19.57 16 2 C 0.07 1.82 5.18 -17.34 -0.09 1.73 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.04 9.05 -37.85 -0.34 -12.39 16 8 H 0.08 1.98 7.89 -52.49 -0.41 1.57 16 9 C 0.11 2.85 5.58 -106.80 -0.60 2.26 16 10 C -0.22 -5.58 9.74 -39.26 -0.38 -5.96 16 11 C -0.07 -1.75 8.61 -39.79 -0.34 -2.09 16 12 C -0.01 -0.28 6.29 -83.57 -0.53 -0.81 16 13 N -0.64 -10.67 5.16 -9.74 -0.05 -10.72 16 14 C 0.50 7.92 6.63 -10.98 -0.07 7.85 16 15 O -0.51 -10.52 13.49 5.55 0.07 -10.44 16 16 C -0.07 -0.67 2.76 -92.99 -0.26 -0.93 16 17 H 0.12 0.85 8.06 -51.93 -0.42 0.44 16 18 C -0.13 -1.21 5.49 -28.05 -0.15 -1.37 16 19 C 0.52 6.58 7.37 -11.19 -0.08 6.50 16 20 O -0.52 -8.28 17.91 5.55 0.10 -8.18 16 21 N -0.66 -7.36 5.36 -10.02 -0.05 -7.42 16 22 C 0.21 2.26 6.50 -83.76 -0.54 1.71 16 23 C -0.19 -1.90 9.90 -39.33 -0.39 -2.29 16 24 C 0.13 1.35 7.30 -39.44 -0.29 1.06 16 25 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 26 C -0.17 -1.62 10.02 -39.48 -0.40 -2.01 16 27 C -0.04 -0.37 9.68 -39.63 -0.38 -0.76 16 28 C -0.11 -1.16 4.15 -104.45 -0.43 -1.59 16 29 C -0.11 -2.46 9.90 -39.79 -0.39 -2.86 16 30 C -0.16 -3.94 8.64 -39.25 -0.34 -4.28 16 31 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 32 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.10 2.49 6.27 -52.48 -0.33 2.16 16 34 H 0.39 4.95 8.01 -40.82 -0.33 4.62 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.12 0.98 7.18 -51.93 -0.37 0.61 16 37 H 0.41 4.03 8.83 -40.82 -0.36 3.67 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.12 3.22 6.07 -52.49 -0.32 2.90 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -33.42 362.76 -9.08 -42.50 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -4.21 Total: 12.52 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -6.01 Total: -16.21 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.50 Total: -37.70 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.62 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.42 -9.08 -42.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012776054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds