Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48503 * 109.46951 * 270.00561 * 3 2 1 5 5 H 1.48497 * 109.46949 * 30.00258 * 3 2 1 6 6 H 1.48490 * 109.47161 * 150.00475 * 3 2 1 7 7 C 1.39906 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00162 * 175.56824 * 7 2 1 9 9 C 1.41150 * 119.99441 * 355.56502 * 7 2 1 10 10 C 1.40871 * 120.16171 * 214.77483 * 9 7 2 11 11 C 1.36380 * 119.82643 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17045 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83221 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99641 * 35.30068 * 13 12 11 15 15 O 1.21287 * 120.00561 * 355.70217 * 14 13 12 16 16 C 1.50704 * 119.99989 * 175.70444 * 14 13 12 17 17 H 1.09001 * 109.45130 * 60.02172 * 16 14 13 18 18 C 1.53234 * 109.89712 * 300.10400 * 16 14 13 19 19 C 1.50502 * 109.77952 * 288.74822 * 18 16 14 20 20 O 1.21289 * 119.60871 * 144.65073 * 19 18 16 21 21 N 1.34553 * 120.77475 * 324.62580 * 19 18 16 22 22 C 1.39821 * 120.46154 * 0.84375 * 21 19 18 23 23 C 1.38829 * 120.18212 * 198.47622 * 22 21 19 24 24 C 1.38324 * 119.88195 * 179.97438 * 23 22 21 25 25 F 1.35095 * 119.98618 * 180.02562 * 24 23 22 26 26 C 1.38539 * 120.03455 * 359.97438 * 24 23 22 27 27 C 1.38233 * 120.11814 * 0.02562 * 26 24 23 28 28 C 1.38108 * 120.06473 * 0.02562 * 27 26 24 29 29 C 1.39482 * 120.33059 * 0.25471 * 12 11 10 30 30 C 1.36376 * 120.16865 * 359.47767 * 29 12 11 31 31 H 0.97004 * 119.99823 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.09049 * 0.02562 * 10 9 7 33 33 H 1.08001 * 119.91317 * 179.97438 * 11 10 9 34 34 H 0.96997 * 120.00089 * 215.29228 * 13 12 11 35 35 H 1.09002 * 109.61422 * 168.56394 * 18 16 14 36 36 H 1.08999 * 109.23918 * 48.70345 * 18 16 14 37 37 H 0.97002 * 119.77321 * 180.81601 * 21 19 18 38 38 H 1.07997 * 120.05717 * 359.92501 * 23 22 21 39 39 H 1.07993 * 119.93849 * 180.02562 * 26 24 23 40 40 H 1.08005 * 119.96980 * 180.02562 * 27 26 24 41 41 H 1.07999 * 119.90997 * 179.74593 * 29 12 11 42 42 H 1.08006 * 120.08307 * 180.26033 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.6999 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2129 -0.0728 9 6 1.3057 -2.4322 0.0934 10 6 1.8650 -3.5186 0.7943 11 6 1.1804 -4.6950 0.8804 12 6 -0.0701 -4.8241 0.2763 13 7 -0.7627 -6.0286 0.3681 14 6 -0.6811 -6.7688 1.4914 15 8 0.0561 -6.4260 2.3915 16 6 -1.5057 -8.0227 1.6291 17 1 -1.2412 -8.7202 0.8344 18 6 -2.9958 -7.6810 1.5245 19 6 -3.4383 -6.9479 2.7622 20 8 -4.2719 -6.0714 2.6736 21 7 -2.9204 -7.2538 3.9658 22 6 -1.9460 -8.2494 4.0858 23 6 -1.6902 -8.8304 5.3205 24 6 -0.7252 -9.8152 5.4321 25 9 -0.4750 -10.3823 6.6324 26 6 -0.0160 -10.2209 4.3133 27 6 -0.2701 -9.6429 3.0836 28 6 -1.2318 -8.6586 2.9673 29 6 -0.6277 -3.7547 -0.4243 30 6 0.0425 -2.5704 -0.5144 31 1 -0.4850 0.8401 0.0004 32 1 2.8334 -3.4204 1.2622 33 1 1.6081 -5.5290 1.4170 34 1 -1.3040 -6.3348 -0.3763 35 1 -3.5751 -8.5984 1.4206 36 1 -3.1589 -7.0489 0.6516 37 1 -3.2248 -6.7802 4.7556 38 1 -2.2431 -8.5135 6.1924 39 1 0.7368 -10.9902 4.4021 40 1 0.2840 -9.9614 2.2129 41 1 -1.5947 -3.8634 -0.8929 42 1 -0.3925 -1.7418 -1.0536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012776057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = -65.688189 kcal Electronic energy + Delta-G solvation = -30284.718124 eV Core-core repulsion = 25915.552218 eV Total energy + Delta-G solvation = -4369.165906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.117 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.16073 -41.57007 -39.49386 -38.78839 -37.28966 -35.35491 -34.51320 -34.26829 -32.86036 -30.43254 -29.67013 -29.52388 -28.87514 -26.03490 -24.61462 -23.41127 -23.16875 -21.79292 -21.01032 -20.25653 -19.21385 -18.53108 -17.72879 -17.40809 -17.21081 -16.62959 -16.21508 -15.84876 -15.82274 -15.71648 -15.55377 -15.15839 -14.62575 -14.24902 -14.05624 -13.91534 -13.72420 -13.57745 -13.14284 -13.07018 -12.72543 -12.52194 -12.27479 -12.09092 -11.87490 -11.65534 -11.59127 -11.38180 -11.16065 -11.00611 -10.86649 -10.74008 -10.29940 -10.05379 -9.52905 -9.48168 -9.23800 -9.04370 -8.90661 -8.35576 -7.56923 -6.89976 -6.63105 -4.36169 0.74285 0.86159 2.27446 2.46087 2.70006 2.94342 3.06930 3.09281 3.12633 3.17049 3.30210 3.69255 3.85545 3.97135 4.13899 4.17412 4.30019 4.45698 4.68175 4.71910 4.82589 4.83537 5.07345 5.10270 5.25585 5.42622 5.55315 5.61849 5.65880 5.82764 5.98886 6.17593 6.35355 6.40648 6.53091 6.69924 6.84490 6.87811 7.04393 7.17129 7.27058 7.61362 7.69592 7.72855 7.82294 8.03980 8.20072 8.29269 8.57628 8.66608 8.91113 8.97295 10.27817 Molecular weight = 354.12amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.002490 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.486635 B =11244.317592 C =11760.586656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.207 4.207 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.646 5.646 14 C 0.497 3.503 15 O -0.514 6.514 16 C -0.065 4.065 17 H 0.123 0.877 18 C -0.132 4.132 19 C 0.523 3.477 20 O -0.513 6.513 21 N -0.659 5.659 22 C 0.209 3.791 23 C -0.192 4.192 24 C 0.133 3.867 25 F -0.136 7.136 26 C -0.176 4.176 27 C -0.040 4.040 28 C -0.109 4.109 29 C -0.118 4.118 30 C -0.142 4.142 31 H 0.278 0.722 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.395 0.605 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.414 0.586 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -20.124 3.492 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.104 4.104 12 C -0.091 4.091 13 N -0.289 5.289 14 C 0.282 3.718 15 O -0.389 6.389 16 C -0.087 4.087 17 H 0.141 0.859 18 C -0.172 4.172 19 C 0.312 3.688 20 O -0.387 6.387 21 N -0.303 5.303 22 C 0.112 3.888 23 C -0.214 4.214 24 C 0.113 3.887 25 F -0.115 7.115 26 C -0.196 4.196 27 C -0.059 4.059 28 C -0.112 4.112 29 C -0.138 4.138 30 C -0.162 4.162 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.229 0.771 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.252 0.748 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.110 0.890 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.700 -19.261 3.943 20.470 hybrid contribution -0.020 0.796 0.435 0.907 sum -5.720 -18.465 4.378 19.821 Atomic orbital electron populations 1.69761 1.07291 1.28779 1.37882 1.25892 0.94946 1.01204 0.92561 0.86193 0.80242 0.80476 0.79054 1.19494 1.20292 1.18714 1.19503 0.94740 0.90222 1.44660 0.90591 1.17729 0.92261 0.91995 0.88137 1.20801 1.01258 0.94979 1.05632 1.20370 0.92750 0.97841 0.99414 1.17232 0.94239 0.85744 1.11934 1.42940 1.48711 1.21337 1.15944 1.20221 0.83857 0.84942 0.82743 1.90727 1.38457 1.70040 1.39670 1.20293 0.94454 0.96986 0.96957 0.85891 1.21828 0.95126 1.03238 0.97019 1.20598 0.80643 0.82848 0.84760 1.90822 1.31984 1.30150 1.85790 1.43566 1.39003 1.36740 1.11030 1.17182 0.89458 0.88934 0.93265 1.20567 1.02770 1.00416 0.97624 1.17307 0.96452 0.94061 0.80856 1.91513 1.93236 1.83405 1.43330 1.21028 1.02798 1.04113 0.91648 1.20640 0.94308 0.93444 0.97464 1.18934 0.99047 1.00038 0.93181 1.20321 0.98286 0.93134 1.02089 1.21199 0.97302 0.95550 1.02119 0.91084 0.88624 0.87534 0.77107 0.86476 0.86570 0.74756 0.84134 0.84300 0.84216 0.89043 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.25 10.60 55.55 0.59 -20.67 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.92 19.10 29.56 -169.99 -5.03 14.08 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.30 9.02 -37.85 -0.34 -12.64 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 11 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 12 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 13 N -0.65 -10.52 5.07 -9.74 -0.05 -10.57 16 14 C 0.50 7.83 6.66 -10.99 -0.07 7.75 16 15 O -0.51 -10.37 13.45 5.55 0.07 -10.29 16 16 C -0.07 -0.66 2.74 -92.82 -0.25 -0.92 16 17 H 0.12 0.77 8.06 -51.93 -0.42 0.35 16 18 C -0.13 -1.24 5.53 -27.86 -0.15 -1.40 16 19 C 0.52 6.97 7.38 -11.18 -0.08 6.88 16 20 O -0.51 -8.79 17.91 5.55 0.10 -8.69 16 21 N -0.66 -7.81 5.36 -10.01 -0.05 -7.86 16 22 C 0.21 2.34 6.50 -83.76 -0.54 1.79 16 23 C -0.19 -1.94 9.90 -39.33 -0.39 -2.32 16 24 C 0.13 1.35 7.30 -39.44 -0.29 1.06 16 25 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 26 C -0.18 -1.58 10.02 -39.47 -0.40 -1.97 16 27 C -0.04 -0.36 9.68 -39.63 -0.38 -0.74 16 28 C -0.11 -1.16 4.14 -104.45 -0.43 -1.59 16 29 C -0.12 -2.68 9.90 -39.79 -0.39 -3.07 16 30 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.11 2.45 6.22 -52.49 -0.33 2.12 16 34 H 0.40 4.82 8.31 -40.82 -0.34 4.48 16 35 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.12 1.04 7.40 -51.93 -0.38 0.66 16 37 H 0.41 4.38 8.83 -40.82 -0.36 4.02 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -34.06 363.10 -9.10 -43.16 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.23 Total: 12.55 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -6.01 Total: -15.79 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.49 Total: -39.10 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.17 Total: -18.98 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.06 -9.10 -43.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012776057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.525 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds