Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38278 * 119.96141 * 2 1 4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2 6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3 7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3 8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7 11 11 O 1.20825 * 119.99640 * 0.02562 * 10 9 8 12 12 O 1.34227 * 120.00681 * 180.02562 * 10 9 8 13 13 C 1.45192 * 117.00505 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47269 * 179.97438 * 13 12 10 15 15 O 1.21277 * 119.99860 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99980 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00238 * 359.97438 * 16 14 13 18 18 C 1.46498 * 120.00322 * 180.02562 * 16 14 13 19 19 C 1.50693 * 109.47446 * 89.99576 * 18 16 14 20 20 H 1.07998 * 120.00004 * 0.02562 * 19 18 16 21 21 C 1.37883 * 120.00175 * 180.02562 * 19 18 16 22 22 N 1.31510 * 120.00219 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99942 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47368 * 89.99771 * 23 21 19 25 25 H 1.48491 * 109.47313 * 210.00189 * 23 21 19 26 26 H 1.48509 * 109.47075 * 330.00061 * 23 21 19 27 27 C 1.38151 * 119.96265 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46711 * 269.97874 * 1 2 3 29 29 H 1.08996 * 109.46942 * 29.98001 * 1 2 3 30 30 H 1.09002 * 109.46795 * 149.97700 * 1 2 3 31 31 H 1.08000 * 119.94149 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.97834 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47232 * 300.00400 * 9 8 7 34 34 H 1.09008 * 109.46822 * 60.00182 * 9 8 7 35 35 H 1.09000 * 109.46745 * 299.99799 * 13 12 10 36 36 H 1.09001 * 109.47613 * 59.99057 * 13 12 10 37 37 H 1.08994 * 109.46809 * 89.99555 * 17 16 14 38 38 H 1.09000 * 109.47252 * 210.00270 * 17 16 14 39 39 H 1.09007 * 109.46635 * 330.00200 * 17 16 14 40 40 H 1.09001 * 109.47478 * 210.00570 * 18 16 14 41 41 H 1.09005 * 109.46649 * 329.99965 * 18 16 14 42 42 H 0.97000 * 120.00193 * 179.97438 * 22 21 19 43 43 H 1.07995 * 120.02562 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5801 1.2018 0.0005 5 6 4.2755 0.0069 0.0001 6 17 6.0115 0.0118 0.0075 7 6 3.5840 -1.1968 -0.0003 8 8 4.2650 -2.3732 -0.0002 9 6 3.4881 -3.5725 -0.0012 10 6 4.4074 -4.7666 -0.0003 11 8 5.6050 -4.6069 0.0016 12 8 3.8958 -6.0075 -0.0015 13 6 4.8405 -7.1101 0.0000 14 6 4.0885 -8.4160 -0.0010 15 8 2.8757 -8.4173 -0.0034 16 7 4.7637 -9.5825 -0.0004 17 6 6.2287 -9.5809 0.0008 18 6 4.0327 -10.8520 -0.0020 19 6 3.7841 -11.2868 -1.4233 20 1 4.1359 -10.6786 -2.2434 21 6 3.1076 -12.4613 -1.6767 22 7 2.8912 -12.8410 -2.9170 23 14 2.4986 -13.5130 -0.2582 24 1 1.1242 -13.0925 0.1154 25 1 2.4850 -14.9397 -0.6699 26 1 3.4024 -13.3429 0.9079 27 6 2.1969 -1.1969 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6560 2.1324 -0.0004 32 1 4.1171 2.1388 0.0010 33 1 2.8586 -3.5983 0.8882 34 1 2.8600 -3.5977 -0.8918 35 1 5.4687 -7.0514 -0.8888 36 1 5.4656 -7.0518 0.8911 37 1 6.5912 -9.5803 1.0287 38 1 6.5935 -10.4705 -0.5128 39 1 6.5914 -8.6904 -0.5129 40 1 4.6218 -11.6112 0.5125 41 1 3.0793 -10.7229 0.5104 42 1 2.4156 -13.6674 -3.0953 43 1 1.6568 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013160576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = -124.385112 kcal Electronic energy + Delta-G solvation = -27764.451412 eV Core-core repulsion = 23416.049010 eV Total energy + Delta-G solvation = -4348.402402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09815 -40.39504 -39.05322 -38.14490 -36.73568 -36.45195 -35.03497 -32.96845 -32.63798 -31.02157 -30.12766 -29.08944 -27.59000 -27.03116 -25.87661 -23.40266 -22.39810 -22.10812 -21.16846 -18.94642 -18.65765 -17.78495 -17.33834 -17.19868 -17.00376 -16.61658 -16.37396 -16.08338 -15.82000 -15.18221 -14.85815 -14.73199 -14.26028 -14.16284 -14.03246 -13.71268 -13.37719 -13.14166 -12.98795 -12.85638 -12.48151 -12.44401 -12.34710 -12.12165 -12.10061 -11.82675 -11.70594 -11.56195 -11.31674 -11.10156 -11.06031 -10.81731 -10.70106 -10.57620 -10.20738 -9.61342 -9.27249 -9.20886 -8.64170 -8.61122 -7.87082 -6.13704 -4.13526 0.64351 0.82533 1.64019 1.89891 1.90591 2.98249 3.08686 3.09527 3.25827 3.31666 3.33463 3.68316 4.16477 4.24269 4.34788 4.41321 4.52196 4.55639 4.63453 4.70651 4.74246 4.94375 5.03777 5.06540 5.10804 5.14219 5.19467 5.20450 5.49456 5.49566 5.59270 5.67761 5.74199 6.00074 6.06499 6.11184 6.14398 6.58083 6.68241 6.83318 7.15775 7.47878 7.53352 8.02279 8.39136 8.73077 8.89276 9.45375 10.99459 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.001812 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.190652 B =15452.645982 C =16595.566648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.039 4.039 3 C -0.147 4.147 4 C -0.068 4.068 5 C -0.072 4.072 6 Cl -0.053 7.053 7 C 0.145 3.855 8 O -0.282 6.282 9 C 0.068 3.932 10 C 0.464 3.536 11 O -0.484 6.484 12 O -0.325 6.325 13 C 0.054 3.946 14 C 0.509 3.491 15 O -0.518 6.518 16 N -0.592 5.592 17 C 0.077 3.923 18 C 0.217 3.783 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.201 4.201 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.265 0.735 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 28.566 8.245 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.040 4.040 3 C -0.165 4.165 4 C -0.087 4.087 5 C -0.100 4.100 6 Cl -0.024 7.024 7 C 0.099 3.901 8 O -0.195 6.195 9 C -0.008 4.008 10 C 0.305 3.695 11 O -0.370 6.370 12 O -0.240 6.240 13 C -0.023 4.023 14 C 0.293 3.707 15 O -0.394 6.394 16 N -0.326 5.326 17 C -0.067 4.067 18 C 0.097 3.903 19 C -0.571 4.571 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.704 3.296 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.219 4.219 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.785 28.350 8.133 29.504 hybrid contribution -0.065 -0.810 0.485 0.946 sum 0.721 27.541 8.617 28.866 Atomic orbital electron populations 1.20874 0.90250 1.03496 1.02984 1.19834 0.96602 0.92209 0.95318 1.20949 0.93188 0.98106 1.04251 1.20922 0.94165 0.96096 0.97521 1.20187 0.85852 0.92107 1.11822 1.98391 1.08104 1.98849 1.97017 1.18612 0.90294 0.84647 0.96584 1.86158 1.33898 1.11081 1.88368 1.21911 0.92047 0.80744 1.06064 1.22773 0.88312 0.84477 0.73945 1.90732 1.16278 1.86366 1.43581 1.86483 1.40241 1.13736 1.83557 1.22956 0.90893 0.83723 1.04742 1.19676 0.88113 0.84235 0.78655 1.90718 1.13324 1.86714 1.48603 1.47764 1.06524 1.06527 1.71756 1.21783 0.80475 1.03479 1.00953 1.19737 0.92560 0.79362 0.98635 1.21303 1.37397 1.07303 0.91127 0.90680 1.24863 0.95165 0.97332 0.95653 1.69891 1.41284 1.23515 1.18634 0.86836 0.80161 0.79787 0.82808 1.19834 1.21002 1.19040 1.21184 0.91753 0.99913 1.09099 0.90447 0.90955 0.90913 0.84845 0.84149 0.87077 0.86972 0.88078 0.88344 0.93097 0.89922 0.92089 0.94760 0.94315 0.92465 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.01 36.00 0.36 -0.16 16 2 C -0.04 -0.26 5.88 -104.64 -0.62 -0.88 16 3 C -0.15 -0.91 9.70 -39.56 -0.38 -1.30 16 4 C -0.07 -0.50 9.83 -39.57 -0.39 -0.89 16 5 C -0.07 -0.71 6.33 -39.36 -0.25 -0.96 16 6 Cl -0.05 -0.56 28.50 -51.86 -1.48 -2.04 16 7 C 0.15 1.45 6.68 -39.19 -0.26 1.19 16 8 O -0.28 -3.27 9.13 -39.47 -0.36 -3.63 16 9 C 0.07 0.66 5.33 36.00 0.19 0.85 16 10 C 0.46 6.19 8.03 36.00 0.29 6.48 16 11 O -0.48 -7.67 16.25 -25.48 -0.41 -8.08 16 12 O -0.32 -4.94 9.75 -45.89 -0.45 -5.38 16 13 C 0.05 0.82 4.50 36.00 0.16 0.98 16 14 C 0.51 10.18 7.75 -10.99 -0.09 10.09 16 15 O -0.52 -12.60 16.08 -14.10 -0.23 -12.83 16 16 N -0.59 -11.81 2.86 -182.95 -0.52 -12.33 16 17 C 0.08 1.12 10.24 59.85 0.61 1.73 16 18 C 0.22 5.17 4.23 -5.20 -0.02 5.14 16 19 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 21 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 23 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 27 C -0.20 -1.56 8.69 -39.44 -0.34 -1.90 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 30 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.11 0.78 7.66 -51.93 -0.40 0.38 16 34 H 0.11 0.83 7.66 -51.92 -0.40 0.43 16 35 H 0.10 1.40 7.39 -51.93 -0.38 1.01 16 36 H 0.10 1.25 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.06 0.74 6.44 -51.92 -0.33 0.40 16 40 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 41 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -36.78 387.90 -8.20 -44.98 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.53 Total: -3.51 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.17 Total: 6.99 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.25 Total: -38.81 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.45 Total: -29.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.78 -8.20 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013160576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.406 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds