Wall clock time and date at job start Tue Mar 31 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32279 * 120.24382 * 2 1 4 4 C 1.31984 * 122.33255 * 179.97438 * 3 2 1 5 5 N 1.36643 * 118.71108 * 180.02562 * 4 3 2 6 6 C 1.46953 * 110.99796 * 128.80227 * 5 4 3 7 7 C 1.53052 * 109.36516 * 176.80898 * 6 5 4 8 8 N 1.46957 * 109.36322 * 58.39743 * 7 6 5 9 9 C 1.46898 * 111.00250 * 176.81083 * 8 7 6 10 10 C 1.50703 * 109.47454 * 293.80574 * 9 8 7 11 11 C 1.38233 * 119.99573 * 269.72761 * 10 9 8 12 12 C 1.38238 * 119.99617 * 179.78754 * 11 10 9 13 13 C 1.38233 * 120.00095 * 0.43915 * 12 11 10 14 14 C 1.38233 * 119.99938 * 359.80923 * 13 12 11 15 15 C 1.38233 * 120.00143 * 89.99405 * 10 9 8 16 16 C 1.46953 * 110.88377 * 300.68159 * 8 7 6 17 17 C 1.46957 * 111.00209 * 4.99836 * 5 4 3 18 18 N 1.35950 * 122.57188 * 0.28257 * 4 3 2 19 19 H 0.97003 * 119.96146 * 179.69814 * 18 4 3 20 20 C 1.35153 * 120.06452 * 359.44092 * 18 4 3 21 21 O 1.21763 * 121.08703 * 180.26503 * 20 18 4 22 22 C 1.40672 * 120.25260 * 179.97438 * 2 1 3 23 23 C 1.40657 * 121.14748 * 359.97438 * 22 2 1 24 24 H 1.08006 * 119.99885 * 317.34793 * 23 22 2 25 25 C 1.39875 * 119.99832 * 137.35046 * 23 22 2 26 26 N 1.30982 * 119.99673 * 159.52736 * 25 23 22 27 27 Si 1.86795 * 120.00153 * 339.52512 * 25 23 22 28 28 H 1.48501 * 109.47184 * 95.26235 * 27 25 23 29 29 H 1.48500 * 109.47230 * 215.26213 * 27 25 23 30 30 H 1.48494 * 109.47121 * 335.26543 * 27 25 23 31 31 H 1.09001 * 109.47078 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47318 * 119.99868 * 1 2 3 33 33 H 1.09000 * 109.46698 * 239.99753 * 1 2 3 34 34 H 1.08997 * 109.48916 * 296.77467 * 6 5 4 35 35 H 1.09003 * 109.49231 * 56.84612 * 6 5 4 36 36 H 1.09005 * 109.49227 * 298.43654 * 7 6 5 37 37 H 1.08996 * 109.49199 * 178.36535 * 7 6 5 38 38 H 1.09003 * 109.46947 * 53.80428 * 9 8 7 39 39 H 1.09001 * 109.47456 * 173.79788 * 9 8 7 40 40 H 1.07995 * 120.00339 * 359.97438 * 11 10 9 41 41 H 1.08001 * 119.99916 * 180.27086 * 12 11 10 42 42 H 1.08002 * 120.00237 * 179.83854 * 13 12 11 43 43 H 1.07998 * 120.00345 * 180.02562 * 14 13 12 44 44 H 1.08003 * 120.00085 * 359.97438 * 15 10 9 45 45 H 1.08997 * 109.48916 * 299.35387 * 16 8 7 46 46 H 1.09003 * 109.49231 * 179.28242 * 16 8 7 47 47 H 1.08993 * 109.48869 * 303.16292 * 17 5 4 48 48 H 1.09004 * 109.48159 * 63.20232 * 17 5 4 49 49 H 0.96994 * 119.99544 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1733 1.1427 0.0000 4 6 3.4923 1.1908 0.0005 5 7 4.1046 2.4124 0.0010 6 6 5.1087 2.4977 1.0706 7 6 5.8254 3.8475 0.9874 8 7 4.8395 4.9308 1.1068 9 6 5.4978 6.2440 1.1074 10 6 6.3344 6.3861 2.3528 11 6 5.7816 6.9264 3.4988 12 6 6.5478 7.0527 4.6424 13 6 7.8693 6.6471 4.6374 14 6 8.4235 6.1115 3.4899 15 6 7.6561 5.9812 2.3475 16 6 3.8354 4.8455 0.0372 17 6 3.1187 3.4957 0.1204 18 7 4.2654 0.0726 -0.0046 19 1 5.2322 0.1521 -0.0085 20 6 3.6884 -1.1495 0.0009 21 8 4.3629 -2.1633 0.0014 22 6 2.2158 -1.2151 0.0005 23 6 1.5424 -2.4501 0.0016 24 1 0.6802 -2.5945 0.6358 25 6 1.9896 -3.4912 -0.8186 26 7 1.6516 -4.7278 -0.5500 27 14 3.0688 -3.1179 -2.2968 28 1 4.4963 -3.2822 -1.9217 29 1 2.7364 -4.0533 -3.4012 30 1 2.8319 -1.7214 -2.7426 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 -0.3633 -0.5139 0.8900 34 1 4.6171 2.4061 2.0390 35 1 5.8344 1.6929 0.9531 36 1 6.3396 3.9279 0.0296 37 1 6.5505 3.9248 1.7975 38 1 6.1368 6.3305 0.2286 39 1 4.7421 7.0293 1.0857 40 1 4.7504 7.2471 3.5015 41 1 6.1147 7.4708 5.5391 42 1 8.4686 6.7482 5.5301 43 1 9.4558 5.7942 3.4860 44 1 8.0891 5.5627 1.4509 45 1 4.3270 4.9371 -0.9312 46 1 3.1097 5.6503 0.1547 47 1 2.3936 3.4183 -0.6896 48 1 2.6043 3.4151 1.0780 49 1 1.9620 -5.4497 -1.1186 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013639811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:42 Heat of formation + Delta-G solvation = 55.553986 kcal Electronic energy + Delta-G solvation = -31339.108609 eV Core-core repulsion = 27266.786309 eV Total energy + Delta-G solvation = -4072.322300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.63056 -39.75974 -38.67454 -36.79186 -35.33687 -34.05723 -32.98905 -31.82196 -31.30384 -30.98372 -30.01864 -28.13037 -27.69789 -24.95221 -23.83849 -23.82393 -22.73397 -21.69746 -21.17331 -20.99808 -19.78149 -18.43219 -17.50753 -17.02441 -16.71625 -16.18751 -15.67123 -15.55076 -15.44487 -14.99927 -14.85786 -14.70630 -14.51132 -14.21604 -14.01139 -13.76922 -13.62063 -13.04114 -13.02613 -12.76920 -12.53967 -12.37960 -12.20908 -11.99884 -11.86233 -11.54260 -11.45806 -11.31947 -11.28501 -11.21403 -11.03209 -10.96793 -10.74209 -10.67217 -10.17611 -9.50361 -9.14034 -9.06247 -9.03778 -8.99719 -8.75168 -8.66061 -8.44064 -7.12115 -6.92268 -4.30157 1.08697 1.17567 1.88785 2.99009 3.21404 3.28171 3.33680 3.41379 3.49578 3.93311 4.06067 4.22655 4.47216 4.55330 4.60055 4.76346 4.79468 4.86462 5.00423 5.00981 5.11091 5.15603 5.25581 5.25953 5.37313 5.42690 5.45822 5.51052 5.62666 5.73363 5.75819 5.76381 5.80654 5.90490 6.05824 6.21237 6.24357 6.27938 6.37867 6.50236 6.63623 6.66292 6.71388 6.75810 6.78889 6.88809 6.92609 6.96386 7.28469 7.46741 7.60950 7.97796 8.09804 8.34947 8.63616 9.04250 9.34691 9.97149 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002364 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.662050 B =11841.093920 C =12329.303441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.043 4.043 3 N -0.491 5.491 4 C 0.383 3.617 5 N -0.469 5.469 6 C 0.055 3.945 7 C 0.058 3.942 8 N -0.534 5.534 9 C 0.093 3.907 10 C -0.076 4.076 11 C -0.098 4.098 12 C -0.122 4.122 13 C -0.123 4.123 14 C -0.122 4.122 15 C -0.115 4.115 16 C 0.054 3.946 17 C 0.087 3.913 18 N -0.630 5.630 19 H 0.393 0.607 20 C 0.501 3.499 21 O -0.543 6.543 22 C -0.050 4.050 23 C -0.392 4.392 24 H 0.102 0.898 25 C 0.096 3.904 26 N -0.787 5.787 27 Si 0.912 3.088 28 H -0.246 1.246 29 H -0.290 1.290 30 H -0.261 1.261 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.057 0.943 49 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 22.472 4.299 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.168 4.168 3 N -0.215 5.215 4 C 0.035 3.965 5 N -0.192 5.192 6 C -0.073 4.073 7 C -0.070 4.070 8 N -0.259 5.259 9 C -0.034 4.034 10 C -0.076 4.076 11 C -0.117 4.117 12 C -0.140 4.140 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.134 4.134 16 C -0.074 4.074 17 C -0.041 4.041 18 N -0.276 5.276 19 H 0.230 0.770 20 C 0.297 3.703 21 O -0.423 6.423 22 C -0.059 4.059 23 C -0.421 4.421 24 H 0.120 0.880 25 C -0.126 4.126 26 N -0.410 5.410 27 Si 0.738 3.262 28 H -0.170 1.170 29 H -0.218 1.218 30 H -0.185 1.185 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.076 0.924 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.725 22.160 4.269 24.196 hybrid contribution 1.557 -0.772 -0.576 1.831 sum 10.282 21.388 3.693 24.017 Atomic orbital electron populations 1.19948 0.89946 0.99833 1.00862 1.20407 0.95050 0.85955 1.15344 1.67073 1.03139 1.31162 1.20086 1.19245 0.86205 0.83084 1.07938 1.58571 1.16076 1.00860 1.43724 1.22259 0.94654 0.97149 0.93207 1.22215 0.93995 0.89893 1.00907 1.62177 1.14918 1.01825 1.46930 1.21030 0.96455 0.91905 0.93993 1.19757 0.93826 0.98472 0.95569 1.21034 0.99617 0.98683 0.92333 1.21166 0.94347 1.00252 0.98213 1.21152 0.95552 0.99230 0.98153 1.21119 0.99837 0.99790 0.93231 1.21082 0.93855 0.99963 0.98461 1.22333 0.94554 0.98139 0.92366 1.21887 0.92463 0.86373 1.03328 1.44049 1.10404 1.06731 1.66418 0.77030 1.19761 0.90749 0.81273 0.78497 1.90760 1.65798 1.33037 1.52729 1.20232 0.88381 0.95740 1.01529 1.19000 1.11489 0.92706 1.18889 0.88042 1.26146 0.93503 0.93721 0.99253 1.69760 1.36111 1.00316 1.34781 0.86284 0.82287 0.79464 0.78177 1.17033 1.21771 1.18512 0.93390 0.92525 0.93119 0.92809 0.90501 0.93867 0.89730 0.93852 0.89771 0.85954 0.86158 0.86303 0.86202 0.86330 0.93952 0.89852 0.88563 0.92420 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 9.29 36.01 0.33 -0.64 16 2 C -0.04 -1.01 6.90 -81.48 -0.56 -1.57 16 3 N -0.49 -10.60 8.35 -9.40 -0.08 -10.68 16 4 C 0.38 7.63 7.28 -321.37 -2.34 5.29 16 5 N -0.47 -7.44 4.73 -174.93 -0.83 -8.26 16 6 C 0.05 0.74 5.37 -3.77 -0.02 0.72 16 7 C 0.06 0.64 5.25 -3.77 -0.02 0.62 16 8 N -0.53 -5.65 4.70 -235.91 -1.11 -6.76 16 9 C 0.09 0.81 5.12 -4.98 -0.03 0.78 16 10 C -0.08 -0.68 4.89 -104.62 -0.51 -1.20 16 11 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 12 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 13 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 14 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 15 C -0.12 -0.99 7.92 -39.58 -0.31 -1.30 16 16 C 0.05 0.58 5.61 -3.77 -0.02 0.56 16 17 C 0.09 1.23 4.76 -3.77 -0.02 1.21 16 18 N -0.63 -13.24 5.03 -13.79 -0.07 -13.31 16 19 H 0.39 7.13 7.36 -40.82 -0.30 6.83 16 20 C 0.50 12.65 6.54 -12.36 -0.08 12.57 16 21 O -0.54 -14.94 13.66 5.13 0.07 -14.87 16 22 C -0.05 -1.28 4.81 -104.33 -0.50 -1.79 16 23 C -0.39 -10.67 8.63 -38.06 -0.33 -11.00 16 24 H 0.10 2.80 7.78 -52.48 -0.41 2.39 16 25 C 0.10 2.62 5.05 -17.30 -0.09 2.53 16 26 N -0.79 -21.40 13.94 55.55 0.77 -20.63 16 27 Si 0.91 22.71 24.79 -169.99 -4.21 18.50 16 28 H -0.25 -6.40 6.29 56.52 0.36 -6.04 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.00 7.98 -51.93 -0.41 0.58 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.99 6.63 -51.93 -0.34 0.64 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.88 5.95 -51.93 -0.31 0.57 16 38 H 0.04 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.08 0.64 7.97 -51.93 -0.41 0.22 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.89 7.99 -52.48 -0.42 0.47 16 45 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 47 H 0.10 1.44 7.66 -51.93 -0.40 1.05 16 48 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 49 H 0.29 7.15 8.30 -40.82 -0.34 6.81 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -31.07 387.71 -12.93 -44.00 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.25 Total: 4.81 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -6.07 Total: 1.37 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -1.31 Total: -59.64 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.07 Total: -14.87 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.21 Total: 18.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.07 -12.93 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013639811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.552 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds