Wall clock time and date at job start Tue Mar 31 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46789 * 2 1 4 4 C 1.35974 * 116.99715 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.98273 * 179.97438 * 4 3 2 6 6 C 1.38086 * 120.00936 * 180.02562 * 5 4 3 7 7 C 1.38846 * 119.98849 * 359.97438 * 6 5 4 8 8 N 1.40115 * 120.01368 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00104 * 292.13009 * 8 7 6 10 10 C 1.50699 * 109.47127 * 269.99944 * 9 8 7 11 11 H 1.08000 * 119.99906 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99844 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00314 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99745 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47331 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47192 * 119.99484 * 14 12 10 17 17 H 1.48497 * 109.47123 * 239.99616 * 14 12 10 18 18 C 1.34777 * 119.99593 * 112.12962 * 8 7 6 19 19 O 1.21297 * 120.00017 * 355.26662 * 18 8 7 20 20 C 1.50701 * 119.99971 * 175.26961 * 18 8 7 21 21 N 1.46499 * 109.47117 * 179.97438 * 20 18 8 22 22 C 1.34691 * 126.73023 * 124.99834 * 21 20 18 23 23 N 1.30527 * 108.34718 * 180.02562 * 22 21 20 24 24 C 1.34186 * 109.79399 * 0.02562 * 23 22 21 25 25 C 1.43200 * 125.67249 * 179.97438 * 24 23 22 26 26 N 9.81071 * 118.96457 * 305.22995 * 5 1 2 27 27 N 1.31721 * 108.65074 * 0.25935 * 24 23 22 28 28 C 1.38842 * 119.97273 * 0.24939 * 7 6 5 29 29 C 1.38095 * 119.98293 * 359.51565 * 28 7 6 30 30 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47260 * 300.00049 * 1 2 3 32 32 H 1.09005 * 109.46671 * 60.00256 * 1 2 3 33 33 H 1.08989 * 109.47837 * 239.99961 * 2 1 3 34 34 H 1.09004 * 109.47084 * 119.99400 * 2 1 3 35 35 H 1.07994 * 119.99056 * 0.02704 * 5 4 3 36 36 H 1.08007 * 120.00438 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47035 * 30.00028 * 9 8 7 38 38 H 1.09004 * 109.47065 * 149.99945 * 9 8 7 39 39 H 0.97000 * 120.00379 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.46810 * 59.99509 * 20 18 8 41 41 H 1.09003 * 109.46675 * 299.99985 * 20 18 8 42 42 H 1.08003 * 125.83368 * 359.97438 * 22 21 20 43 43 H 1.08000 * 120.01154 * 179.74180 * 28 7 6 44 44 H 1.07998 * 119.99263 * 180.20536 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8842 2.8076 0.0000 6 6 5.2530 2.9892 0.0001 7 6 6.0991 1.8883 0.0011 8 7 7.4882 2.0719 0.0006 9 6 8.1515 2.6404 -1.1755 10 6 8.5513 1.5300 -2.1125 11 1 8.3328 0.5035 -1.8577 12 6 9.1961 1.8245 -3.2951 13 7 9.4618 3.0745 -3.6056 14 14 9.6910 0.4480 -4.4569 15 1 9.2809 -0.8577 -3.8806 16 1 9.0222 0.6427 -5.7684 17 1 11.1639 0.4648 -4.6451 18 6 8.2141 1.7256 1.0821 19 8 7.6573 1.3356 2.0867 20 6 9.7174 1.8228 1.0432 21 7 10.2680 1.3936 2.3312 22 6 11.1897 0.4324 2.5331 23 7 11.4188 0.3456 3.8152 24 6 10.6613 1.2364 4.4734 25 6 10.6429 1.4303 5.8921 26 7 10.6353 1.5778 7.0115 27 7 9.9331 1.8986 3.5981 28 6 5.5682 0.6054 -0.0031 29 6 4.1991 0.4251 0.0018 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8935 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.2259 3.6638 -0.0003 36 1 5.6655 3.9874 -0.0008 37 1 7.4675 3.3182 -1.6862 38 1 9.0398 3.1888 -0.8620 39 1 9.9157 3.2817 -4.4374 40 1 10.0098 2.8548 0.8492 41 1 10.1026 1.1809 0.2509 42 1 11.6586 -0.1652 1.7654 43 1 6.2257 -0.2513 -0.0065 44 1 3.7859 -0.5727 0.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014143476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:15 Heat of formation + Delta-G solvation = 93.862818 kcal Electronic energy + Delta-G solvation = -30293.927976 eV Core-core repulsion = 26022.007866 eV Total energy + Delta-G solvation = -4271.920110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27693 -40.30227 -39.36828 -37.28536 -36.82934 -35.08523 -34.03534 -32.84240 -31.86556 -31.57984 -30.73966 -29.44738 -28.02659 -27.00928 -24.28924 -24.08237 -23.21928 -22.71758 -22.08928 -21.39620 -19.29010 -18.74559 -18.17405 -17.21366 -16.92930 -16.54423 -16.11339 -16.05154 -15.80589 -15.50525 -15.18741 -14.79305 -14.50346 -14.35396 -13.82669 -13.51483 -13.43867 -13.34128 -13.26797 -13.14869 -13.01174 -12.79205 -12.68482 -12.49934 -12.26826 -11.94641 -11.89541 -11.73608 -11.69288 -11.22296 -11.02707 -10.77666 -10.66775 -10.44769 -10.31226 -10.15018 -10.02471 -9.94244 -9.35450 -8.80906 -8.75535 -8.49446 -7.61151 -6.42044 -4.52202 1.11756 1.57383 1.63472 1.90085 2.10713 2.45785 2.88431 3.06333 3.17360 3.17711 3.21112 3.26416 3.47692 3.54235 3.98479 4.13786 4.45333 4.62967 4.78053 4.80766 4.90853 4.92999 5.01923 5.11536 5.13358 5.22878 5.33665 5.34802 5.56160 5.61286 5.62714 5.73116 5.81011 5.84338 5.97673 6.08088 6.22647 6.48620 6.51787 6.55546 6.73411 6.85638 6.92966 7.20827 7.28066 7.50298 7.56436 7.74043 7.74605 7.87572 8.46587 8.62016 9.17702 10.64326 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.006047 B = 0.003699 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4629.455213 B = 7567.496854 C =11212.136853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.117 3.883 5 C -0.142 4.142 6 C -0.081 4.081 7 C 0.137 3.863 8 N -0.551 5.551 9 C 0.233 3.767 10 C -0.548 4.548 11 H 0.064 0.936 12 C 0.070 3.930 13 N -0.885 5.885 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.508 3.492 19 O -0.531 6.531 20 C 0.111 3.889 21 N -0.346 5.346 22 C 0.273 3.727 23 N -0.515 5.515 24 C 0.276 3.724 25 C 0.322 3.678 26 N -0.377 5.377 27 N -0.225 5.225 28 C -0.065 4.065 29 C -0.199 4.199 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.268 0.732 40 H 0.128 0.872 41 H 0.153 0.847 42 H 0.234 0.766 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 -4.148 2.938 7.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.072 3.928 5 C -0.162 4.162 6 C -0.100 4.100 7 C 0.047 3.953 8 N -0.280 5.280 9 C 0.115 3.885 10 C -0.587 4.587 11 H 0.083 0.917 12 C -0.134 4.134 13 N -0.522 5.522 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.206 1.206 18 C 0.294 3.706 19 O -0.408 6.408 20 C -0.013 4.013 21 N -0.138 5.138 22 C -0.023 4.023 23 N -0.243 5.243 24 C -0.006 4.006 25 C 0.002 3.998 26 N -0.056 5.056 27 N -0.058 5.058 28 C -0.084 4.084 29 C -0.218 4.218 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.171 0.829 42 H 0.250 0.750 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.548 -3.503 5.234 9.085 hybrid contribution 0.449 -1.077 -1.914 2.242 sum -6.099 -4.581 3.320 8.319 Atomic orbital electron populations 1.21766 0.93005 1.02638 1.03398 1.22734 0.95591 0.82404 1.01411 1.86044 1.19322 1.28874 1.89120 1.18899 0.81890 0.94138 0.97875 1.20174 0.94501 0.94689 1.06798 1.21003 0.92022 0.98748 0.98252 1.17358 0.83239 0.92590 1.02161 1.45799 1.04133 1.61526 1.16511 1.19693 0.93174 0.94624 0.81019 1.21444 1.39346 0.93492 1.04376 0.91743 1.24925 0.95203 0.95768 0.97521 1.69908 1.40368 1.17403 1.24540 0.86462 0.78365 0.81950 0.80887 1.19557 1.20710 1.20625 1.20203 0.88706 0.78456 0.83190 1.90763 1.72187 1.46528 1.31283 1.21997 0.93533 1.05839 0.79933 1.50278 1.30028 1.27514 1.05966 1.26188 0.90653 0.91033 0.94457 1.70529 1.26779 1.23467 1.03490 1.18158 0.97009 0.96716 0.88669 1.22653 0.94003 0.93962 0.89164 1.80964 1.06916 1.06941 1.10777 1.78607 1.18499 1.20294 0.88390 1.20973 0.94215 0.96688 0.96540 1.21012 0.93743 0.97824 1.09210 0.90573 0.91627 0.91576 0.92070 0.92173 0.85205 0.85136 0.93706 0.94012 0.92218 0.85451 0.82924 0.75027 0.85959 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.32 -4.38 10.14 -19.66 -0.20 -4.58 16 4 C 0.12 1.78 6.69 -39.22 -0.26 1.52 16 5 C -0.14 -2.17 9.98 -39.46 -0.39 -2.57 16 6 C -0.08 -1.34 9.68 -39.41 -0.38 -1.72 16 7 C 0.14 2.50 4.75 -83.62 -0.40 2.11 16 8 N -0.55 -10.08 2.51 -114.69 -0.29 -10.37 16 9 C 0.23 4.65 4.88 -5.19 -0.03 4.62 16 10 C -0.55 -12.03 9.16 -34.44 -0.32 -12.35 16 11 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 12 C 0.07 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -21.56 13.29 55.43 0.74 -20.82 16 14 Si 0.90 18.11 29.54 -169.99 -5.02 13.09 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 C 0.51 8.95 7.56 -10.98 -0.08 8.87 16 19 O -0.53 -10.91 15.49 5.54 0.09 -10.82 16 20 C 0.11 1.53 5.69 -5.19 -0.03 1.50 16 21 N -0.35 -4.83 3.42 -63.82 -0.22 -5.04 16 22 C 0.27 3.11 12.61 -90.67 -1.14 1.97 16 23 N -0.51 -7.14 11.22 -13.78 -0.15 -7.30 16 24 C 0.28 4.22 7.82 -158.51 -1.24 2.98 16 25 C 0.32 4.87 15.98 -22.70 -0.36 4.50 16 26 N -0.38 -5.89 18.49 41.57 0.77 -5.13 16 27 N -0.23 -3.69 11.84 30.96 0.37 -3.33 16 28 C -0.06 -1.12 9.56 -39.41 -0.38 -1.49 16 29 C -0.20 -3.02 9.03 -39.45 -0.36 -3.37 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 7.66 -51.94 -0.40 0.19 16 34 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 37 H 0.04 0.98 7.86 -51.93 -0.41 0.57 16 38 H 0.04 0.81 6.47 -51.93 -0.34 0.47 16 39 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 40 H 0.13 1.60 7.26 -51.93 -0.38 1.22 16 41 H 0.15 1.80 7.86 -51.93 -0.41 1.39 16 42 H 0.23 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.13 1.57 6.29 -52.49 -0.33 1.24 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -30.06 395.68 -8.00 -38.05 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.16 Total: 2.23 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -4.88 Total: 8.05 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 1.21 Total: -51.99 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.11 Total: -15.40 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.06 -8.00 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014143476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.916 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds