Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46466 * 2 1 4 4 H 1.08992 * 109.47511 * 55.00119 * 3 2 1 5 5 O 1.42904 * 109.46966 * 294.99551 * 3 2 1 6 6 C 1.35979 * 116.99767 * 98.74467 * 5 3 2 7 7 C 1.38704 * 120.00198 * 355.39754 * 6 5 3 8 8 C 1.38120 * 120.00005 * 180.30152 * 7 6 5 9 9 C 1.38699 * 120.00423 * 359.44971 * 8 7 6 10 10 O 1.35979 * 120.00412 * 180.30154 * 9 8 7 11 11 C 1.42905 * 117.00106 * 180.02562 * 10 9 8 12 12 C 1.38700 * 119.99549 * 0.27891 * 9 8 7 13 13 C 1.38134 * 119.99891 * 359.97438 * 12 9 8 14 14 C 1.50703 * 109.46754 * 175.00162 * 3 2 1 15 15 O 1.21279 * 120.00357 * 119.99990 * 14 3 2 16 16 N 1.34781 * 119.99779 * 299.99474 * 14 3 2 17 17 C 1.39243 * 119.99949 * 184.95532 * 16 14 3 18 18 C 1.39479 * 119.83269 * 213.79486 * 17 16 14 19 19 C 1.36378 * 120.16636 * 179.76050 * 18 17 16 20 20 C 1.40869 * 119.82544 * 0.51108 * 19 18 17 21 21 C 1.41155 * 120.15855 * 179.71418 * 20 19 18 22 22 H 1.08000 * 119.99727 * 209.19552 * 21 20 19 23 23 C 1.39900 * 120.00105 * 29.20842 * 21 20 19 24 24 N 1.30876 * 120.00265 * 10.43399 * 23 21 20 25 25 Si 1.86805 * 119.99989 * 190.43850 * 23 21 20 26 26 H 1.48498 * 109.47196 * 89.99707 * 25 23 21 27 27 H 1.48500 * 109.46727 * 209.99417 * 25 23 21 28 28 H 1.48499 * 109.46852 * 329.99438 * 25 23 21 29 29 C 1.40863 * 119.67491 * 359.74418 * 20 19 18 30 30 C 1.36377 * 119.83147 * 359.97438 * 29 20 19 31 31 H 1.08995 * 109.46838 * 60.00411 * 1 2 3 32 32 H 1.09005 * 109.46509 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47215 * 300.00055 * 1 2 3 34 34 H 1.08992 * 109.47377 * 239.99918 * 2 1 3 35 35 H 1.08997 * 109.47061 * 119.99094 * 2 1 3 36 36 H 1.08005 * 119.99757 * 0.05341 * 7 6 5 37 37 H 1.08005 * 120.00009 * 179.72396 * 8 7 6 38 38 H 1.08998 * 109.46856 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.46617 * 299.99736 * 11 10 9 40 40 H 1.08997 * 109.47313 * 59.99351 * 11 10 9 41 41 H 1.08001 * 120.00206 * 180.02562 * 12 9 8 42 42 H 1.07998 * 119.99427 * 180.02562 * 13 12 9 43 43 H 0.96996 * 119.99911 * 4.95916 * 16 14 3 44 44 H 1.07999 * 119.91359 * 0.02562 * 18 17 16 45 45 H 1.08001 * 120.08613 * 180.25337 * 19 18 17 46 46 H 0.96999 * 119.99937 * 180.02562 * 24 23 21 47 47 H 1.08006 * 120.08703 * 179.97438 * 29 20 19 48 48 H 1.07994 * 119.91879 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6618 2.0814 -1.2211 6 6 0.5575 2.8741 -1.1870 7 6 -0.2007 2.9576 -0.0285 8 6 -1.3259 3.7579 0.0042 9 6 -1.6913 4.4871 -1.1177 10 8 -2.7956 5.2798 -1.0835 11 6 -3.1130 6.0019 -2.2751 12 6 -0.9299 4.4080 -2.2743 13 6 0.1925 3.6035 -2.3087 14 6 3.5418 1.4445 0.1238 15 8 4.2216 1.9437 -0.7477 16 7 4.1297 0.8914 1.2032 17 6 5.5092 0.9837 1.3685 18 6 6.2070 -0.0616 1.9734 19 6 7.5589 0.0196 2.1343 20 6 8.2488 1.1675 1.6976 21 6 9.6471 1.2615 1.8662 22 1 10.1122 2.2283 1.9900 23 6 10.4304 0.1024 1.8726 24 7 9.9056 -1.0440 1.5215 25 14 12.2253 0.1908 2.3825 26 1 12.3350 -0.0256 3.8475 27 1 12.9950 -0.8591 1.6680 28 1 12.7726 1.5274 2.0371 29 6 7.5363 2.2213 1.0925 30 6 6.1854 2.1233 0.9331 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 0.0865 2.3936 0.8467 37 1 -1.9189 3.8195 0.9048 38 1 -4.0143 6.5929 -2.1125 39 1 -2.2852 6.6636 -2.5302 40 1 -3.2816 5.2997 -3.0915 41 1 -1.2140 4.9761 -3.1478 42 1 0.7855 3.5423 -3.2092 43 1 3.5918 0.4290 1.8648 44 1 5.6761 -0.9392 2.3113 45 1 8.0984 -0.7923 2.5992 46 1 10.4487 -1.8477 1.5263 47 1 8.0585 3.1047 0.7556 48 1 5.6378 2.9306 0.4698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014398253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = -56.764676 kcal Electronic energy + Delta-G solvation = -30274.068654 eV Core-core repulsion = 26066.864438 eV Total energy + Delta-G solvation = -4207.204216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.95809 -39.95611 -38.95480 -37.29977 -36.43364 -34.57485 -33.90941 -32.81947 -31.35502 -29.82705 -29.61394 -29.09945 -27.87451 -26.98965 -24.79064 -23.44731 -22.55896 -22.17457 -21.26488 -20.71167 -19.59970 -18.86213 -17.93796 -17.54177 -17.25850 -16.38937 -16.25648 -16.01182 -15.69756 -15.29140 -15.09893 -14.71918 -14.37833 -14.18453 -13.96520 -13.87016 -13.55866 -13.21617 -13.17069 -12.91722 -12.72545 -12.56124 -12.41273 -12.19702 -12.10700 -11.97030 -11.81016 -11.61016 -11.35460 -11.27921 -11.15349 -11.02034 -10.78824 -10.73416 -10.53456 -9.96331 -9.56864 -9.41633 -9.32049 -9.15887 -8.93008 -7.90136 -7.57757 -6.96545 -6.71545 -4.33920 1.00590 1.25504 2.47968 2.72886 2.96954 3.03112 3.05986 3.08067 3.11279 3.32432 3.50781 3.79434 3.93793 4.42801 4.52896 4.56711 4.60970 4.66547 4.72382 4.81757 4.82944 4.88977 4.98585 5.09246 5.12758 5.23300 5.37444 5.44832 5.58443 5.65996 5.70527 5.74473 5.87365 5.98363 6.06703 6.11115 6.15958 6.31684 6.38485 6.71269 6.86559 7.02528 7.03820 7.15752 7.24204 7.30901 7.57359 7.68035 7.84387 8.01469 8.21275 8.26192 8.57159 8.68475 8.87594 8.96205 10.21287 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.001791 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.780321 B =15626.993607 C =16239.945267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.100 0.900 5 O -0.279 6.279 6 C 0.103 3.897 7 C -0.174 4.174 8 C -0.109 4.109 9 C 0.084 3.916 10 O -0.320 6.320 11 C 0.028 3.972 12 C -0.167 4.167 13 C -0.111 4.111 14 C 0.496 3.504 15 O -0.507 6.507 16 N -0.645 5.645 17 C -0.003 4.003 18 C -0.114 4.114 19 C -0.146 4.146 20 C 0.105 3.895 21 C -0.458 4.458 22 H 0.078 0.922 23 C 0.072 3.928 24 N -0.801 5.801 25 Si 0.913 3.087 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.210 4.210 30 C -0.079 4.079 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.395 0.605 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.280 0.720 47 H 0.096 0.904 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.618 4.869 -2.467 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.118 0.882 5 O -0.192 6.192 6 C 0.057 3.943 7 C -0.193 4.193 8 C -0.128 4.128 9 C 0.040 3.960 10 O -0.234 6.234 11 C -0.068 4.068 12 C -0.185 4.185 13 C -0.130 4.130 14 C 0.281 3.719 15 O -0.381 6.381 16 N -0.290 5.290 17 C -0.095 4.095 18 C -0.135 4.135 19 C -0.166 4.166 20 C 0.102 3.898 21 C -0.488 4.488 22 H 0.096 0.904 23 C -0.145 4.145 24 N -0.427 5.427 25 Si 0.737 3.263 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.230 4.230 30 C -0.099 4.099 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.229 0.771 44 H 0.109 0.891 45 H 0.142 0.858 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.076 4.996 -3.170 23.823 hybrid contribution 0.548 -0.305 0.334 0.710 sum -22.529 4.691 -2.836 23.186 Atomic orbital electron populations 1.21942 0.94581 1.02486 1.02315 1.22002 0.97151 0.94178 1.04369 1.22399 0.93790 0.95068 0.88024 0.88210 1.86244 1.41475 1.58944 1.32504 1.18971 0.87817 0.92892 0.94579 1.21203 0.96772 1.02965 0.98311 1.20164 0.97696 0.97578 0.97375 1.18884 0.88287 0.94189 0.94661 1.86063 1.42113 1.57567 1.37677 1.23030 1.01512 0.95575 0.86638 1.21042 0.96843 1.02680 0.97964 1.20240 0.97687 0.97071 0.97965 1.20154 0.88691 0.80620 0.82448 1.90741 1.64387 1.43990 1.39019 1.42884 1.07458 1.55840 1.22842 1.17148 0.80766 0.97439 1.14152 1.20230 0.95001 0.95387 1.02835 1.20951 0.91548 1.00504 1.03587 1.17696 0.93319 0.90972 0.87813 1.19561 0.91931 0.93783 1.43492 0.90411 1.25910 1.01136 0.94838 0.92609 1.69808 1.38188 1.00005 1.34678 0.86240 0.81541 0.79102 0.79392 1.19357 1.20313 1.18659 1.20704 0.93366 1.01385 1.07565 1.20253 0.94646 0.95402 0.99589 0.91984 0.91905 0.92327 0.89876 0.89718 0.84281 0.84935 0.88377 0.92683 0.92747 0.84881 0.84668 0.77144 0.89051 0.85827 0.90931 0.88587 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.48 37.16 0.32 -0.98 16 2 C -0.14 -1.42 5.58 -26.73 -0.15 -1.57 16 3 C 0.07 0.87 2.56 -27.88 -0.07 0.80 16 4 H 0.10 1.04 5.41 -51.93 -0.28 0.76 16 5 O -0.28 -4.10 9.12 -39.58 -0.36 -4.46 16 6 C 0.10 1.28 5.61 -39.24 -0.22 1.06 16 7 C -0.17 -1.80 7.33 -39.45 -0.29 -2.09 16 8 C -0.11 -1.09 9.98 -39.45 -0.39 -1.48 16 9 C 0.08 0.87 6.69 -39.24 -0.26 0.60 16 10 O -0.32 -3.05 10.50 -19.67 -0.21 -3.25 16 11 C 0.03 0.16 9.81 101.05 0.99 1.15 16 12 C -0.17 -1.62 9.03 -39.45 -0.36 -1.98 16 13 C -0.11 -1.27 9.98 -39.45 -0.39 -1.66 16 14 C 0.50 8.79 6.96 -10.98 -0.08 8.71 16 15 O -0.51 -11.54 14.19 -14.35 -0.20 -11.74 16 16 N -0.65 -11.05 5.21 -9.74 -0.05 -11.10 16 17 C 0.00 -0.07 6.28 -83.57 -0.52 -0.59 16 18 C -0.11 -2.57 9.89 -39.79 -0.39 -2.96 16 19 C -0.15 -3.71 8.60 -39.26 -0.34 -4.05 16 20 C 0.10 2.80 5.55 -106.80 -0.59 2.21 16 21 C -0.46 -12.14 9.04 -37.85 -0.34 -12.48 16 22 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 23 C 0.07 1.79 5.25 -17.34 -0.09 1.70 16 24 N -0.80 -20.66 10.84 55.55 0.60 -20.06 16 25 Si 0.91 18.69 29.57 -169.99 -5.03 13.66 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 28 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 29 C -0.21 -5.35 9.74 -39.26 -0.38 -5.73 16 30 C -0.08 -1.90 8.57 -39.79 -0.34 -2.25 16 31 H 0.06 0.59 6.50 -51.93 -0.34 0.25 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 6.74 -51.93 -0.35 0.05 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.71 7.32 -51.93 -0.38 0.33 16 36 H 0.14 1.19 4.30 -52.48 -0.23 0.96 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 40 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 41 H 0.13 0.97 6.29 -52.49 -0.33 0.64 16 42 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.39 5.06 8.03 -40.82 -0.33 4.74 16 44 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.12 3.22 6.23 -52.49 -0.33 2.89 16 46 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 47 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 48 H 0.10 2.42 6.43 -52.49 -0.34 2.08 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -32.58 391.10 -9.46 -42.05 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.20 Total: 10.59 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -3.91 Total: -21.58 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.55 Total: -31.16 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.77 Total: -19.45 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.58 -9.46 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014398253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.717 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds