Wall clock time and date at job start Tue Mar 31 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47145 * 2 1 4 4 C 1.35796 * 117.00224 * 179.97438 * 3 2 1 5 5 C 1.38842 * 119.92743 * 359.97438 * 4 3 2 6 6 C 1.37779 * 120.15338 * 180.02562 * 5 4 3 7 7 C 1.39725 * 120.00053 * 359.97438 * 6 5 4 8 8 C 1.47558 * 120.07305 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00293 * 179.72586 * 8 7 6 10 10 N 1.34776 * 119.99898 * 359.97438 * 8 7 6 11 11 C 1.39134 * 119.99834 * 176.68582 * 10 8 7 12 12 C 1.39506 * 119.83273 * 217.49535 * 11 10 8 13 13 C 1.36365 * 120.16633 * 179.76239 * 12 11 10 14 14 C 1.40881 * 119.82698 * 0.53409 * 13 12 11 15 15 C 1.41134 * 120.16099 * 179.69856 * 14 13 12 16 16 H 1.07999 * 120.00314 * 157.99948 * 15 14 13 17 17 C 1.39907 * 119.99865 * 337.99625 * 15 14 13 18 18 N 1.30873 * 119.99961 * 327.55657 * 17 15 14 19 19 Si 1.86804 * 120.00037 * 147.56192 * 17 15 14 20 20 H 1.48498 * 109.47181 * 94.98128 * 19 17 15 21 21 H 1.48499 * 109.47197 * 214.98730 * 19 17 15 22 22 H 1.48502 * 109.46676 * 334.98678 * 19 17 15 23 23 C 1.40883 * 119.67609 * 359.72287 * 14 13 12 24 24 C 1.36360 * 119.82970 * 359.97438 * 23 14 13 25 25 C 1.39750 * 119.85640 * 0.23342 * 7 6 5 26 26 C 1.38135 * 119.84563 * 359.49019 * 25 7 6 27 27 O 1.36007 * 120.00200 * 180.23199 * 26 25 7 28 28 C 1.42900 * 116.99941 * 0.31920 * 27 26 25 29 29 C 1.53000 * 109.47234 * 179.97438 * 28 27 26 30 30 H 1.09000 * 109.46745 * 59.99929 * 1 2 3 31 31 H 1.08999 * 109.46780 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47148 * 300.00198 * 1 2 3 33 33 H 1.08993 * 109.47779 * 239.99775 * 2 1 3 34 34 H 1.09000 * 109.47169 * 119.99217 * 2 1 3 35 35 H 1.08003 * 119.92205 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00037 * 179.97438 * 6 5 4 37 37 H 0.96999 * 120.00342 * 356.68447 * 10 8 7 38 38 H 1.08004 * 119.92099 * 0.02562 * 12 11 10 39 39 H 1.08000 * 120.08853 * 180.25360 * 13 12 11 40 40 H 0.97006 * 119.99593 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.08119 * 179.97438 * 23 14 13 42 42 H 1.08004 * 119.91326 * 180.02562 * 24 23 14 43 43 H 1.08002 * 120.07886 * 179.72239 * 25 7 6 44 44 H 1.09003 * 109.47432 * 300.00311 * 28 27 26 45 45 H 1.09004 * 109.46675 * 60.00200 * 28 27 26 46 46 H 1.08998 * 109.47168 * 180.02562 * 29 28 27 47 47 H 1.09003 * 109.47269 * 300.00539 * 29 28 27 48 48 H 1.08997 * 109.46976 * 60.00191 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3526 1.5253 0.0005 5 6 4.1970 0.4231 0.0016 6 6 5.5636 0.5983 0.0027 7 6 6.1027 1.8874 0.0022 8 6 7.5661 2.0769 0.0039 9 8 8.0339 3.1992 -0.0016 10 7 8.3842 1.0058 0.0065 11 6 9.7626 1.1832 -0.0615 12 6 10.5411 0.2931 -0.8016 13 6 11.8920 0.4633 -0.8769 14 6 12.5023 1.5348 -0.1956 15 6 13.9006 1.7139 -0.2635 16 1 14.3312 2.6839 -0.0633 17 6 14.7290 0.6347 -0.5901 18 7 14.3960 -0.5784 -0.2293 19 14 16.3104 0.9255 -1.5409 20 1 17.4440 1.0504 -0.5898 21 1 16.5554 -0.2183 -2.4557 22 1 16.1889 2.1757 -2.3330 23 6 11.7100 2.4264 0.5542 24 6 10.3597 2.2470 0.6151 25 6 5.2530 2.9969 0.0055 26 6 3.8838 2.8142 -0.0014 27 8 3.0539 3.8917 -0.0029 28 6 3.6668 5.1826 -0.0043 29 6 2.5825 6.2620 -0.0066 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.7816 -0.5738 0.0024 36 1 6.2182 -0.2607 0.0039 37 1 8.0122 0.1114 0.0558 38 1 10.0723 -0.5304 -1.3198 39 1 12.4931 -0.2242 -1.4536 40 1 14.9702 -1.3267 -0.4561 41 1 12.1711 3.2498 1.0794 42 1 9.7510 2.9300 1.1891 43 1 5.6658 3.9949 0.0097 44 1 4.2866 5.2915 0.8858 45 1 4.2871 5.2893 -0.8943 46 1 3.0500 7.2466 -0.0080 47 1 1.9630 6.1529 -0.8968 48 1 1.9619 6.1554 0.8831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015028937.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:01 Heat of formation + Delta-G solvation = -67.418641 kcal Electronic energy + Delta-G solvation = -29943.262040 eV Core-core repulsion = 25735.595834 eV Total energy + Delta-G solvation = -4207.666206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.89701 -39.57751 -38.85281 -37.47029 -36.56442 -34.51093 -33.13039 -32.45583 -31.76135 -30.51821 -29.81874 -29.48873 -28.58325 -25.47313 -24.54865 -23.42252 -23.34834 -21.76041 -21.30418 -20.70060 -19.86836 -18.94746 -17.77699 -17.34589 -16.92531 -16.62097 -16.55756 -16.02377 -15.75083 -15.19923 -14.98045 -14.60559 -14.36931 -14.20369 -13.95785 -13.78663 -13.32241 -13.11295 -13.03935 -12.92544 -12.77587 -12.72841 -12.53954 -12.16897 -12.09771 -12.00623 -11.93122 -11.47382 -11.42769 -11.21336 -11.15872 -10.99058 -10.95308 -10.90105 -10.54829 -10.18699 -9.75217 -9.49425 -9.10422 -8.95683 -8.71032 -8.03525 -7.56130 -7.15996 -6.89929 -4.28503 0.79762 1.14217 2.61449 2.86652 2.95756 2.97304 3.04101 3.08736 3.10762 3.26070 3.69450 3.87811 3.91085 4.46149 4.49439 4.56888 4.63449 4.72656 4.74309 4.78730 4.87200 4.99350 5.02871 5.05045 5.11901 5.23006 5.42859 5.43144 5.50923 5.57905 5.64837 5.67187 5.77907 5.87343 6.00087 6.16338 6.19466 6.36768 6.42341 6.75655 6.84330 6.95579 6.98508 7.13160 7.27495 7.35423 7.55498 7.68428 7.87859 8.00737 8.23956 8.27433 8.53328 8.74819 8.82339 8.98597 9.99997 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.001890 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.174559 B =14812.495383 C =16130.492941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.303 6.303 4 C 0.120 3.880 5 C -0.181 4.181 6 C -0.084 4.084 7 C -0.120 4.120 8 C 0.542 3.458 9 O -0.532 6.532 10 N -0.640 5.640 11 C -0.023 4.023 12 C -0.101 4.101 13 C -0.171 4.171 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.064 4.064 25 C -0.117 4.117 26 C 0.093 3.907 27 O -0.305 6.305 28 C 0.049 3.951 29 C -0.149 4.149 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.393 0.607 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.283 0.717 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.149 0.851 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.505 -0.138 -0.108 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.216 6.216 4 C 0.074 3.926 5 C -0.200 4.200 6 C -0.103 4.103 7 C -0.124 4.124 8 C 0.330 3.670 9 O -0.411 6.411 10 N -0.283 5.283 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.191 4.191 14 C 0.110 3.890 15 C -0.492 4.492 16 H 0.100 0.900 17 C -0.134 4.134 18 N -0.391 5.391 19 Si 0.719 3.281 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.084 4.084 25 C -0.136 4.136 26 C 0.048 3.952 27 O -0.220 6.220 28 C -0.026 4.026 29 C -0.206 4.206 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.228 0.772 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.166 0.834 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.478 0.554 -0.100 23.485 hybrid contribution 0.914 -0.746 -0.402 1.246 sum -22.565 -0.192 -0.503 22.571 Atomic orbital electron populations 1.21761 0.92665 1.02782 1.03616 1.22838 0.96032 0.82049 1.01496 1.86135 1.18085 1.28997 1.88429 1.18393 0.83089 0.91100 1.00054 1.20961 0.93629 0.97562 1.07856 1.21042 0.94544 0.96331 0.98360 1.19788 0.93595 0.93289 1.05692 1.18065 0.85574 0.85239 0.78123 1.90754 1.76759 1.23653 1.49922 1.42817 1.05795 1.08203 1.71468 1.17029 0.80263 1.03820 1.10431 1.20169 0.94558 0.98421 0.98915 1.20614 0.92456 1.01681 1.04341 1.17606 0.93145 0.90206 0.88042 1.19516 0.91386 0.96567 1.41690 0.89963 1.25951 0.99913 0.94358 0.93173 1.69950 1.37316 1.00679 1.31161 0.86506 0.81211 0.79814 0.80540 1.19440 1.19873 1.18068 1.20596 0.93007 1.04134 1.06648 1.20309 0.94473 0.96281 0.97327 1.21172 0.90309 1.00559 1.01597 1.18021 0.88647 0.85473 1.03077 1.86150 1.33865 1.12835 1.89133 1.22856 0.96839 0.80989 1.01903 1.21747 0.98783 0.96707 1.03372 0.91487 0.90367 0.91492 0.91895 0.91894 0.84280 0.84987 0.77223 0.89243 0.87452 0.90575 0.88698 0.87928 0.83359 0.91750 0.91746 0.90302 0.91599 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.37 5.46 37.16 0.20 0.58 16 3 O -0.30 -3.45 9.91 -33.76 -0.33 -3.79 16 4 C 0.12 1.46 6.71 -38.92 -0.26 1.20 16 5 C -0.18 -1.89 9.01 -39.53 -0.36 -2.25 16 6 C -0.08 -0.98 9.53 -39.19 -0.37 -1.35 16 7 C -0.12 -1.77 5.87 -104.98 -0.62 -2.39 16 8 C 0.54 10.05 7.57 -12.46 -0.09 9.95 16 9 O -0.53 -11.78 13.96 5.29 0.07 -11.70 16 10 N -0.64 -11.69 5.24 -10.68 -0.06 -11.75 16 11 C -0.02 -0.53 6.25 -83.60 -0.52 -1.05 16 12 C -0.10 -2.30 9.90 -39.78 -0.39 -2.70 16 13 C -0.17 -4.37 8.74 -39.26 -0.34 -4.71 16 14 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 15 C -0.46 -12.24 8.94 -37.86 -0.34 -12.58 16 16 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 17 C 0.09 2.16 4.77 -17.34 -0.08 2.08 16 18 N -0.77 -19.27 11.78 55.55 0.65 -18.62 16 19 Si 0.90 18.13 29.66 -169.99 -5.04 13.08 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.22 -5.73 9.74 -39.26 -0.38 -6.12 16 24 C -0.06 -1.56 8.59 -39.79 -0.34 -1.91 16 25 C -0.12 -1.65 8.58 -39.05 -0.33 -1.99 16 26 C 0.09 1.25 6.69 -39.18 -0.26 0.98 16 27 O -0.31 -3.92 9.92 -34.42 -0.34 -4.26 16 28 C 0.05 0.49 5.46 37.16 0.20 0.70 16 29 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 34 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 35 H 0.14 1.03 6.27 -52.48 -0.33 0.70 16 36 H 0.13 1.24 6.39 -52.49 -0.34 0.91 16 37 H 0.39 5.69 6.85 -40.82 -0.28 5.41 16 38 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 39 H 0.11 2.77 6.52 -52.49 -0.34 2.43 16 40 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 41 H 0.09 2.31 8.06 -52.48 -0.42 1.89 16 42 H 0.10 2.47 6.45 -52.48 -0.34 2.13 16 43 H 0.15 2.09 5.87 -52.49 -0.31 1.78 16 44 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 45 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -31.76 399.98 -9.61 -41.37 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.46 Total: 10.00 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -4.13 Total: -20.35 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.60 Total: -30.37 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.60 Total: -19.75 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.04 Total: 13.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.76 -9.61 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015028937.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.053 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds