Wall clock time and date at job start Tue Mar 31 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35888 * 116.99598 * 2 1 4 4 C 1.39848 * 119.57140 * 0.02577 * 3 2 1 5 5 C 1.35982 * 120.93280 * 180.02562 * 4 3 2 6 6 C 1.40594 * 119.73417 * 0.02562 * 5 4 3 7 7 C 1.40521 * 121.22318 * 179.97438 * 6 5 4 8 8 C 1.36106 * 119.67336 * 180.02562 * 7 6 5 9 9 C 1.50689 * 119.50305 * 180.02562 * 8 7 6 10 10 C 1.53001 * 110.53958 * 89.29596 * 9 8 7 11 11 N 1.47313 * 110.60066 * 326.46191 * 9 8 7 12 12 C 1.34523 * 106.62206 * 241.47760 * 11 9 8 13 13 O 1.21539 * 123.76928 * 180.02562 * 12 11 9 14 14 N 1.33792 * 112.45781 * 359.97438 * 12 11 9 15 15 C 1.46503 * 124.17661 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46982 * 89.97593 * 15 14 12 17 17 H 1.08003 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99874 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99656 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47442 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46921 * 120.00694 * 20 18 16 23 23 H 1.48504 * 109.47208 * 240.00017 * 20 18 16 24 24 C 1.35116 * 111.68533 * 359.91078 * 14 12 11 25 25 O 1.21233 * 127.33440 * 180.09917 * 24 14 12 26 26 C 1.39376 * 120.99059 * 0.02562 * 8 7 6 27 27 C 1.36083 * 120.98311 * 359.97438 * 26 8 7 28 28 C 1.40578 * 119.65727 * 359.97438 * 27 26 8 29 29 C 1.36575 * 119.56563 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47042 * 59.99812 * 1 2 3 31 31 H 1.09002 * 109.46865 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46894 * 299.99649 * 1 2 3 33 33 H 1.07997 * 119.53501 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.13090 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.16328 * 359.97438 * 7 6 5 36 36 H 1.09001 * 109.46992 * 59.99618 * 10 9 8 37 37 H 1.09004 * 109.47555 * 179.97438 * 10 9 8 38 38 H 1.08995 * 109.46824 * 300.00212 * 10 9 8 39 39 H 0.97004 * 126.68664 * 61.51388 * 11 9 8 40 40 H 1.08998 * 109.47104 * 209.97508 * 15 14 12 41 41 H 1.09001 * 109.46917 * 329.97859 * 15 14 12 42 42 H 0.97000 * 120.00085 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.50513 * 180.02562 * 26 8 7 44 44 H 1.08002 * 120.17702 * 179.97438 * 27 26 8 45 45 H 1.07999 * 120.18597 * 359.72908 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2754 2.3779 0.0005 5 6 1.8637 3.6039 0.0000 6 6 3.2660 3.7044 -0.0016 7 6 3.9067 4.9551 -0.0027 8 6 5.2664 5.0156 -0.0048 9 6 5.9494 6.3588 -0.0054 10 6 6.1793 6.8448 1.4271 11 7 5.1586 7.3421 -0.7657 12 6 5.9306 7.7473 -1.7901 13 8 5.5794 8.5641 -2.6188 14 7 7.1286 7.1516 -1.7941 15 6 8.1697 7.4038 -2.7936 16 6 9.0488 8.5360 -2.3284 17 1 8.8520 9.0191 -1.3827 18 6 10.1051 8.9544 -3.1097 19 7 10.3451 8.3658 -4.2610 20 14 11.1952 10.3573 -2.5328 21 1 10.7177 10.8452 -1.2140 22 1 12.5944 9.8767 -2.4053 23 1 11.1404 11.4651 -3.5203 24 6 7.2614 6.2904 -0.7615 25 8 8.2255 5.6055 -0.4948 26 6 6.0365 3.8539 -0.0064 27 6 5.4511 2.6254 -0.0054 28 6 4.0491 2.5229 -0.0022 29 6 3.4103 1.2720 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.1979 2.3045 0.0005 34 1 1.2561 4.4968 0.0001 35 1 3.3230 5.8638 -0.0027 36 1 6.8073 6.1288 1.9572 37 1 6.6739 7.8159 1.4064 38 1 5.2208 6.9355 1.9381 39 1 4.2572 7.6397 -0.5661 40 1 8.7730 6.5055 -2.9243 41 1 7.7051 7.6709 -3.7427 42 1 11.0879 8.6604 -4.8108 43 1 7.1138 3.9299 -0.0077 44 1 6.0605 1.7337 -0.0071 45 1 3.9946 0.3638 0.0035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015234723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:44 Heat of formation + Delta-G solvation = -30.447847 kcal Electronic energy + Delta-G solvation = -30878.436040 eV Core-core repulsion = 26634.258576 eV Total energy + Delta-G solvation = -4244.177465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10328 -40.77999 -39.16360 -38.00137 -36.59043 -35.33380 -34.51884 -32.95266 -32.43236 -30.92453 -29.91113 -29.10691 -27.88155 -27.25034 -24.88954 -23.56286 -23.47493 -22.68119 -22.23421 -21.02135 -19.79188 -18.56314 -17.74276 -17.42290 -17.00791 -16.70967 -16.08991 -15.89837 -15.71682 -15.41163 -15.21984 -14.92356 -14.75927 -14.41832 -14.20279 -13.87808 -13.76220 -13.58584 -13.52877 -13.15733 -12.96673 -12.78602 -12.45415 -12.37721 -12.30714 -12.08787 -11.75201 -11.56062 -11.47753 -11.12667 -10.95521 -10.82562 -10.78192 -10.43021 -10.03021 -10.00047 -9.90883 -9.46712 -9.26195 -8.59139 -8.58179 -8.52650 -7.87211 -6.14959 -4.20210 0.32780 0.78945 1.85352 2.15831 2.70294 2.90655 2.94783 3.28036 3.34486 3.39092 3.55227 3.72645 3.92518 4.23481 4.27228 4.38626 4.44213 4.55197 4.61066 4.75633 4.78376 4.88668 4.95283 5.05952 5.09102 5.15856 5.17733 5.21339 5.44646 5.51288 5.56545 5.62863 5.72298 5.86029 5.97406 5.99423 6.00272 6.06932 6.30974 6.41018 6.49154 6.57198 6.77012 7.01669 7.05857 7.11919 7.20673 7.77763 7.91449 8.00941 8.02999 8.70275 8.84799 9.44672 10.94497 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.002342 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.988984 B =11954.770390 C =12184.929925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.194 4.194 5 C -0.060 4.060 6 C -0.082 4.082 7 C -0.073 4.073 8 C -0.087 4.087 9 C 0.158 3.842 10 C -0.140 4.140 11 N -0.732 5.732 12 C 0.703 3.297 13 O -0.538 6.538 14 N -0.554 5.554 15 C 0.248 3.752 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.890 5.890 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.534 3.466 25 O -0.466 6.466 26 C -0.094 4.094 27 C -0.112 4.112 28 C -0.009 4.009 29 C -0.152 4.152 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.430 0.570 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.266 0.734 43 H 0.147 0.853 44 H 0.133 0.867 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.066 -14.108 12.705 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.212 4.212 5 C -0.078 4.078 6 C -0.083 4.083 7 C -0.092 4.092 8 C -0.088 4.088 9 C 0.066 3.934 10 C -0.198 4.198 11 N -0.397 5.397 12 C 0.404 3.596 13 O -0.411 6.411 14 N -0.298 5.298 15 C 0.131 3.869 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.319 3.681 25 O -0.337 6.337 26 C -0.112 4.112 27 C -0.130 4.130 28 C -0.009 4.009 29 C -0.171 4.171 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.273 0.727 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.165 0.835 44 H 0.150 0.850 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.396 -14.192 12.109 26.912 hybrid contribution -0.112 1.070 0.255 1.105 sum -19.508 -13.123 12.364 26.564 Atomic orbital electron populations 1.23058 0.78473 1.03964 1.01333 1.86096 1.21346 1.26943 1.88868 1.18655 0.92192 0.84078 0.96954 1.21000 1.00177 0.92398 1.07666 1.20876 0.93310 0.97415 0.96227 1.17942 0.93246 0.92910 1.04153 1.20639 0.93544 0.96493 0.98479 1.19171 0.93689 0.93023 1.02926 1.20183 0.90380 0.87898 0.94901 1.21960 1.03409 1.02837 0.91572 1.45680 1.18384 1.45980 1.29690 1.15943 0.80870 0.80924 0.81851 1.90964 1.75242 1.34320 1.40576 1.46886 1.16167 1.38323 1.28394 1.19637 0.83326 0.98340 0.85627 1.21273 1.12679 1.17210 1.06020 0.92121 1.24905 0.97204 0.97035 0.94673 1.69931 1.30061 1.41335 1.11487 0.86330 0.80041 0.81600 0.78819 1.19689 1.20710 1.20704 1.20383 0.87648 0.79218 0.80827 1.90683 1.34098 1.40311 1.68618 1.21215 1.02047 0.91324 0.96583 1.20946 0.92769 0.98035 1.01205 1.17823 0.93583 0.91769 0.97737 1.20158 0.91619 0.97581 1.07726 0.92608 0.88251 0.92658 0.85311 0.85036 0.85564 0.89862 0.90750 0.90713 0.72670 0.92918 0.92747 0.92441 0.83534 0.84960 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.80 101.05 0.99 1.13 16 2 O -0.32 -2.98 10.47 -19.39 -0.20 -3.18 16 3 C 0.13 1.27 6.63 -39.58 -0.26 1.01 16 4 C -0.19 -1.67 8.93 -39.79 -0.36 -2.03 16 5 C -0.06 -0.54 9.76 -39.50 -0.39 -0.93 16 6 C -0.08 -0.92 5.74 -106.81 -0.61 -1.53 16 7 C -0.07 -0.81 9.04 -39.49 -0.36 -1.17 16 8 C -0.09 -1.13 4.86 -104.97 -0.51 -1.64 16 9 C 0.16 2.27 1.14 -133.25 -0.15 2.12 16 10 C -0.14 -1.62 8.96 37.16 0.33 -1.29 16 11 N -0.73 -10.72 5.30 -54.03 -0.29 -11.00 16 12 C 0.70 14.48 8.62 -88.02 -0.76 13.72 16 13 O -0.54 -12.95 17.48 5.33 0.09 -12.86 16 14 N -0.55 -12.38 2.60 -121.92 -0.32 -12.70 16 15 C 0.25 6.60 5.46 -5.19 -0.03 6.57 16 16 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 17 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 18 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.53 10.41 6.50 -10.40 -0.07 10.35 16 25 O -0.47 -9.87 15.61 5.60 0.09 -9.79 16 26 C -0.09 -1.25 9.08 -39.93 -0.36 -1.61 16 27 C -0.11 -1.31 9.77 -39.47 -0.39 -1.70 16 28 C -0.01 -0.10 5.74 -106.84 -0.61 -0.72 16 29 C -0.15 -1.64 9.68 -39.35 -0.38 -2.02 16 30 H 0.06 0.25 7.63 -51.93 -0.40 -0.15 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.23 7.63 -51.93 -0.40 -0.17 16 33 H 0.13 0.78 6.21 -52.49 -0.33 0.45 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.13 1.09 6.93 -52.48 -0.36 0.72 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.43 4.73 8.09 -40.82 -0.33 4.40 16 40 H 0.05 1.46 8.02 -51.93 -0.42 1.04 16 41 H 0.05 1.55 7.86 -51.93 -0.41 1.14 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.15 2.15 5.61 -52.49 -0.29 1.85 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -34.77 381.01 -8.94 -43.71 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.44 Total: 2.28 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -4.33 Total: 6.46 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.13 Total: -49.19 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.02 Total: -25.82 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.77 -8.94 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015234723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.258 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds