Wall clock time and date at job start Tue Mar 31 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 H 1.09004 * 109.46834 * 304.99421 * 3 2 1 5 5 O 1.42896 * 109.47216 * 64.99473 * 3 2 1 6 6 C 1.35988 * 117.00315 * 267.15188 * 5 3 2 7 7 C 1.38566 * 120.07123 * 356.00161 * 6 5 3 8 8 C 1.38243 * 120.00115 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.14488 * 359.97438 * 8 7 6 10 10 C 1.38245 * 120.14572 * 0.02562 * 9 8 7 11 11 C 1.38566 * 119.99489 * 359.97438 * 10 9 8 12 12 O 1.36002 * 120.06545 * 180.02562 * 11 10 9 13 13 C 1.42902 * 117.00091 * 359.97438 * 12 11 10 14 14 C 1.50698 * 109.47117 * 184.99894 * 3 2 1 15 15 O 1.21280 * 119.99800 * 244.99969 * 14 3 2 16 16 N 1.34780 * 120.00022 * 64.99202 * 14 3 2 17 17 C 1.39239 * 119.99866 * 185.22272 * 16 14 3 18 18 C 1.39479 * 119.83228 * 213.94014 * 17 16 14 19 19 C 1.36373 * 120.16732 * 179.76097 * 18 17 16 20 20 C 1.40874 * 119.83118 * 0.51126 * 19 18 17 21 21 C 1.41150 * 120.16743 * 179.71675 * 20 19 18 22 22 H 1.08000 * 120.00250 * 210.64748 * 21 20 19 23 23 C 1.39908 * 119.99940 * 30.64625 * 21 20 19 24 24 N 1.30875 * 119.99648 * 9.02520 * 23 21 20 25 25 Si 1.86796 * 120.00090 * 189.02636 * 23 21 20 26 26 H 1.48499 * 109.47186 * 60.00165 * 25 23 21 27 27 H 1.48503 * 109.47205 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47188 * 299.99956 * 25 23 21 29 29 C 1.40873 * 119.66799 * 359.74109 * 20 19 18 30 30 C 1.36376 * 119.83011 * 0.02562 * 29 20 19 31 31 H 1.09007 * 109.46814 * 60.00551 * 1 2 3 32 32 H 1.09006 * 109.47137 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47155 * 300.00401 * 1 2 3 34 34 H 1.08994 * 109.47555 * 239.99313 * 2 1 3 35 35 H 1.09007 * 109.46814 * 119.99449 * 2 1 3 36 36 H 1.07997 * 120.00299 * 359.95754 * 7 6 5 37 37 H 1.07999 * 119.93124 * 180.02562 * 8 7 6 38 38 H 1.07999 * 119.92490 * 180.27580 * 9 8 7 39 39 H 1.07990 * 119.99752 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.46887 * 60.00570 * 13 12 11 41 41 H 1.09004 * 109.46907 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.47222 * 300.00105 * 13 12 11 43 43 H 0.96998 * 120.00167 * 5.22949 * 16 14 3 44 44 H 1.07999 * 119.91811 * 0.02562 * 18 17 16 45 45 H 1.08004 * 120.08739 * 180.25228 * 19 18 17 46 46 H 0.97002 * 119.99712 * 179.97438 * 24 23 21 47 47 H 1.08003 * 120.08523 * 179.97438 * 29 20 19 48 48 H 1.07992 * 119.91785 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6618 2.0814 1.2209 6 6 0.4914 2.7737 1.2188 7 6 -0.2348 2.9063 0.0461 8 6 -1.4247 3.6099 0.0457 9 6 -1.8934 4.1822 1.2138 10 6 -1.1738 4.0537 2.3872 11 6 0.0196 3.3497 2.3944 12 8 0.7284 3.2219 3.5480 13 6 0.1838 3.8397 4.7159 14 6 3.5419 1.4444 -0.1238 15 8 4.2249 1.8612 0.7876 16 7 4.1260 0.9827 -1.2473 17 6 5.5129 0.8826 -1.3202 18 6 6.1618 1.1073 -2.5342 19 6 7.5203 1.0159 -2.6123 20 6 8.2673 0.6830 -1.4653 21 6 9.6731 0.5806 -1.5395 22 1 10.1993 -0.1071 -0.8941 23 6 10.3850 1.3700 -2.4492 24 7 9.7751 2.3251 -3.1040 25 14 12.2058 1.0608 -2.7292 26 1 12.4019 -0.3247 -3.2264 27 1 12.7228 2.0244 -3.7339 28 1 12.9401 1.2364 -1.4506 29 6 7.6043 0.4523 -0.2440 30 6 6.2456 0.5521 -0.1803 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5138 0.8901 36 1 0.1290 2.4602 -0.8677 37 1 -1.9900 3.7122 -0.8689 38 1 -2.8257 4.7273 1.2104 39 1 -1.5423 4.5013 3.2983 40 1 -0.7979 3.4157 4.9269 41 1 0.8463 3.6624 5.5632 42 1 0.0879 4.9124 4.5483 43 1 3.5803 0.7202 -2.0050 44 1 5.5875 1.3585 -3.4137 45 1 8.0218 1.1941 -3.5521 46 1 10.2687 2.8726 -3.7344 47 1 8.1703 0.1963 0.6394 48 1 5.7358 0.3752 0.7551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016576835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:17 Heat of formation + Delta-G solvation = -53.603257 kcal Electronic energy + Delta-G solvation = -30769.161266 eV Core-core repulsion = 26562.094140 eV Total energy + Delta-G solvation = -4207.067126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.02246 -39.81551 -38.59039 -37.30003 -36.78891 -34.51170 -33.84322 -32.79368 -30.64881 -30.21038 -29.61307 -29.12005 -27.55364 -27.29369 -24.79983 -23.22452 -22.48168 -22.15975 -21.34118 -20.64845 -19.55176 -19.02444 -17.60595 -17.37225 -17.19735 -16.36488 -16.20311 -16.05165 -15.55372 -15.19302 -15.07067 -14.96622 -14.57433 -14.20343 -14.04162 -13.90115 -13.51244 -13.17792 -12.96149 -12.69052 -12.45602 -12.42586 -12.32823 -12.10951 -12.00021 -11.79101 -11.65797 -11.40348 -11.38052 -11.33899 -11.17429 -11.10380 -11.02825 -10.73961 -10.67407 -9.95741 -9.53415 -9.40479 -9.15163 -8.94003 -8.87091 -7.94688 -7.55766 -6.92499 -6.68603 -4.32117 1.05418 1.24610 2.48851 2.76555 2.99651 3.07507 3.09125 3.11344 3.11810 3.33808 3.51200 3.82281 3.95867 4.45647 4.58265 4.61625 4.68414 4.69269 4.75851 4.88686 4.91633 4.96151 5.04824 5.17028 5.21347 5.26778 5.30986 5.41852 5.46676 5.67545 5.70907 5.86236 5.94994 6.02268 6.05558 6.17664 6.25971 6.40923 6.44345 6.73249 6.85232 6.96041 7.04985 7.18013 7.27302 7.44015 7.59544 7.70296 7.86692 8.03499 8.23410 8.28511 8.59346 8.71590 8.89806 8.98400 10.24785 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002014 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.821342 B =13901.938913 C =14365.950145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.097 0.903 5 O -0.268 6.268 6 C 0.109 3.891 7 C -0.178 4.178 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.174 4.174 11 C 0.099 3.901 12 O -0.302 6.302 13 C 0.027 3.973 14 C 0.499 3.501 15 O -0.504 6.504 16 N -0.646 5.646 17 C 0.000 4.000 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.105 3.895 21 C -0.459 4.459 22 H 0.077 0.923 23 C 0.071 3.929 24 N -0.803 5.803 25 Si 0.913 3.087 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.266 1.266 29 C -0.209 4.209 30 C -0.079 4.079 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.395 0.605 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.280 0.720 47 H 0.096 0.904 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 0.965 4.437 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.115 0.885 5 O -0.180 6.180 6 C 0.063 3.937 7 C -0.197 4.197 8 C -0.134 4.134 9 C -0.141 4.141 10 C -0.193 4.193 11 C 0.053 3.947 12 O -0.215 6.215 13 C -0.068 4.068 14 C 0.283 3.717 15 O -0.377 6.377 16 N -0.291 5.291 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.165 4.165 20 C 0.103 3.897 21 C -0.489 4.489 22 H 0.095 0.905 23 C -0.145 4.145 24 N -0.429 5.429 25 Si 0.738 3.262 26 H -0.189 1.189 27 H -0.204 1.204 28 H -0.190 1.190 29 C -0.229 4.229 30 C -0.099 4.099 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.228 0.772 44 H 0.109 0.891 45 H 0.141 0.859 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.775 1.327 5.164 23.391 hybrid contribution 0.236 0.147 -0.636 0.694 sum -22.539 1.474 4.528 23.036 Atomic orbital electron populations 1.21958 0.94644 1.02407 1.02279 1.22010 0.97060 0.94231 1.04428 1.22379 0.94004 0.94967 0.88059 0.88541 1.86349 1.34861 1.63455 1.33359 1.18320 0.87715 0.95675 0.91992 1.21180 0.97278 1.04389 0.96836 1.20829 0.95912 0.98283 0.98408 1.20823 1.00141 1.00953 0.92150 1.21058 0.95021 1.03112 1.00086 1.18279 0.92122 0.98986 0.85324 1.86267 1.47357 1.72511 1.15351 1.23065 0.99884 0.97400 0.86477 1.20053 0.88534 0.79190 0.83924 1.90755 1.64188 1.44009 1.38772 1.42853 1.06690 1.63810 1.15757 1.17147 0.80252 1.15690 0.96150 1.20230 0.95263 1.03241 0.94813 1.20941 0.91273 1.04911 0.99349 1.17687 0.93436 0.88459 0.90141 1.19505 0.91882 1.20068 1.17476 0.90488 1.25903 1.00993 0.93597 0.94009 1.69797 1.38306 1.14123 1.20710 0.86292 0.81888 0.79128 0.78926 1.18930 1.20399 1.19048 1.20728 0.93247 1.11803 0.97120 1.20258 0.94184 0.99268 0.96172 0.92292 0.91976 0.92097 0.89619 0.89950 0.84383 0.85605 0.85730 0.84900 0.92886 0.88145 0.92801 0.77179 0.89066 0.85899 0.90922 0.88560 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.44 37.16 0.31 -1.06 16 2 C -0.14 -1.51 5.61 -26.73 -0.15 -1.66 16 3 C 0.07 0.90 2.58 -27.88 -0.07 0.83 16 4 H 0.10 1.05 5.39 -51.93 -0.28 0.77 16 5 O -0.27 -4.34 9.01 -47.30 -0.43 -4.76 16 6 C 0.11 1.48 5.27 -39.12 -0.21 1.27 16 7 C -0.18 -1.87 7.10 -39.46 -0.28 -2.15 16 8 C -0.12 -1.02 10.04 -39.57 -0.40 -1.42 16 9 C -0.12 -1.05 10.04 -39.57 -0.40 -1.45 16 10 C -0.17 -1.70 9.04 -39.46 -0.36 -2.06 16 11 C 0.10 1.28 6.70 -39.12 -0.26 1.02 16 12 O -0.30 -4.17 10.28 -34.25 -0.35 -4.52 16 13 C 0.03 0.23 9.81 101.05 0.99 1.22 16 14 C 0.50 9.14 6.90 -10.98 -0.08 9.06 16 15 O -0.50 -11.87 14.22 -14.30 -0.20 -12.07 16 16 N -0.65 -11.28 5.19 -9.74 -0.05 -11.33 16 17 C 0.00 -0.01 6.27 -83.57 -0.52 -0.53 16 18 C -0.12 -2.62 9.89 -39.79 -0.39 -3.01 16 19 C -0.14 -3.71 8.59 -39.26 -0.34 -4.05 16 20 C 0.11 2.84 5.54 -106.80 -0.59 2.25 16 21 C -0.46 -12.27 9.04 -37.85 -0.34 -12.61 16 22 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 23 C 0.07 1.80 5.27 -17.33 -0.09 1.71 16 24 N -0.80 -20.95 10.87 55.55 0.60 -20.35 16 25 Si 0.91 18.88 29.57 -169.99 -5.03 13.85 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 C -0.21 -5.37 9.74 -39.26 -0.38 -5.75 16 30 C -0.08 -1.92 8.57 -39.79 -0.34 -2.26 16 31 H 0.06 0.43 6.81 -51.92 -0.35 0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.63 6.20 -51.93 -0.32 0.30 16 34 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.14 1.20 4.60 -52.49 -0.24 0.96 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 40 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 43 H 0.39 5.16 8.70 -40.82 -0.36 4.80 16 44 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.12 3.22 6.29 -52.48 -0.33 2.89 16 46 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 47 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 48 H 0.10 2.46 6.45 -52.49 -0.34 2.12 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -33.79 391.72 -9.71 -43.50 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.27 Total: 10.42 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.90 Total: -20.65 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.55 Total: -31.68 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.98 Total: -21.35 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.79 -9.71 -43.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016576835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.099 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds