Wall clock time and date at job start Tue Mar 31 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47322 * 2 1 4 4 H 1.08996 * 109.46838 * 54.99717 * 3 2 1 5 5 O 1.42900 * 109.46996 * 295.00231 * 3 2 1 6 6 C 1.35996 * 117.00231 * 98.17056 * 5 3 2 7 7 C 1.38560 * 120.07414 * 354.60933 * 6 5 3 8 8 C 1.38240 * 120.00069 * 179.69926 * 7 6 5 9 9 C 1.38253 * 120.14467 * 0.59600 * 8 7 6 10 10 C 1.38242 * 120.14574 * 359.67853 * 9 8 7 11 11 C 1.38559 * 119.99912 * 0.02562 * 10 9 8 12 12 O 1.35998 * 120.07234 * 179.97438 * 11 10 9 13 13 C 1.42896 * 117.00174 * 0.02562 * 12 11 10 14 14 C 1.50696 * 109.47301 * 175.00143 * 3 2 1 15 15 O 1.21276 * 120.00197 * 115.00026 * 14 3 2 16 16 N 1.34779 * 120.00106 * 294.99878 * 14 3 2 17 17 C 1.39237 * 120.00408 * 184.73216 * 16 14 3 18 18 C 1.39483 * 119.82871 * 322.77317 * 17 16 14 19 19 C 1.36377 * 120.16380 * 180.23003 * 18 17 16 20 20 C 1.40871 * 119.82736 * 359.50530 * 19 18 17 21 21 C 1.41155 * 120.16024 * 180.24797 * 20 19 18 22 22 H 1.07994 * 119.99975 * 206.15564 * 21 20 19 23 23 C 1.39908 * 120.00178 * 26.15828 * 21 20 19 24 24 N 1.30874 * 119.99623 * 12.57076 * 23 21 20 25 25 Si 1.86801 * 120.00110 * 192.57828 * 23 21 20 26 26 H 1.48502 * 109.47320 * 84.98092 * 25 23 21 27 27 H 1.48499 * 109.47056 * 204.98630 * 25 23 21 28 28 H 1.48503 * 109.46880 * 324.98356 * 25 23 21 29 29 C 1.40863 * 119.67552 * 0.49151 * 20 19 18 30 30 C 1.36376 * 119.82694 * 359.76151 * 29 20 19 31 31 H 1.08997 * 109.46973 * 299.99935 * 1 2 3 32 32 H 1.08997 * 109.47111 * 60.00568 * 1 2 3 33 33 H 1.09003 * 109.46775 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47071 * 239.99810 * 2 1 3 35 35 H 1.09006 * 109.46970 * 120.00043 * 2 1 3 36 36 H 1.08005 * 119.99982 * 359.97302 * 7 6 5 37 37 H 1.08005 * 119.92580 * 180.29858 * 8 7 6 38 38 H 1.08002 * 119.92377 * 179.69821 * 9 8 7 39 39 H 1.07994 * 119.99844 * 179.97438 * 10 9 8 40 40 H 1.09004 * 109.47457 * 300.00679 * 13 12 11 41 41 H 1.09006 * 109.47026 * 60.00322 * 13 12 11 42 42 H 1.08995 * 109.47400 * 180.02562 * 13 12 11 43 43 H 0.97006 * 119.99490 * 4.73364 * 16 14 3 44 44 H 1.08001 * 119.91741 * 359.95648 * 18 17 16 45 45 H 1.07998 * 120.08193 * 179.74796 * 19 18 17 46 46 H 0.97007 * 119.99464 * 180.02562 * 24 23 21 47 47 H 1.07996 * 120.08973 * 179.73161 * 29 20 19 48 48 H 1.07995 * 119.91783 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 8 1.6620 2.0813 -1.2210 6 6 0.5508 2.8648 -1.1897 7 6 -0.2227 2.9271 -0.0417 8 6 -1.3484 3.7288 -0.0094 9 6 -1.7122 4.4600 -1.1249 10 6 -0.9481 4.3979 -2.2753 11 6 0.1848 3.6011 -2.3123 12 8 0.9373 3.5385 -3.4434 13 6 0.5015 4.3212 -4.5567 14 6 3.5419 1.4442 0.1238 15 8 4.2250 1.8610 -0.7875 16 7 4.1261 0.9827 1.2473 17 6 5.5067 1.0749 1.4026 18 6 6.3430 0.8807 0.3033 19 6 7.6964 0.9648 0.4486 20 6 8.2487 1.2588 1.7108 21 6 9.6483 1.3526 1.8680 22 1 10.0980 1.1559 2.8300 23 6 10.4530 1.7005 0.7777 24 7 9.9075 2.1754 -0.3130 25 14 12.3060 1.4868 0.8786 26 1 12.6640 0.0919 0.5163 27 1 12.9648 2.4275 -0.0629 28 1 12.7624 1.7712 2.2629 29 6 7.3976 1.4536 2.8162 30 6 6.0464 1.3612 2.6565 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.0565 2.3528 0.8294 37 1 -1.9477 3.7802 0.8876 38 1 -2.5952 5.0814 -1.0973 39 1 -1.2348 4.9698 -3.1454 40 1 -0.4992 4.0063 -4.8528 41 1 0.4827 5.3742 -4.2754 42 1 1.1883 4.1800 -5.3912 43 1 3.5846 0.5863 1.9478 44 1 5.9179 0.6590 -0.6644 45 1 8.3429 0.8102 -0.4026 46 1 10.4654 2.4162 -1.0691 47 1 7.8140 1.6750 3.7877 48 1 5.3925 1.5099 3.5031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016576838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:21 Heat of formation + Delta-G solvation = -53.013599 kcal Electronic energy + Delta-G solvation = -30877.660163 eV Core-core repulsion = 26670.618606 eV Total energy + Delta-G solvation = -4207.041557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97659 -39.77519 -38.54859 -37.27105 -36.75665 -34.50748 -33.87247 -32.78535 -30.62508 -30.16189 -29.52685 -29.14529 -27.53018 -27.26727 -24.78901 -23.21386 -22.45635 -22.08129 -21.29484 -20.73699 -19.46253 -18.98688 -17.60772 -17.30675 -17.25134 -16.32104 -16.21005 -15.95975 -15.49461 -15.23182 -15.06821 -14.93598 -14.39513 -14.25788 -14.01206 -13.87211 -13.56887 -13.14772 -12.95975 -12.69190 -12.47821 -12.37959 -12.29111 -12.09945 -11.92554 -11.78424 -11.64239 -11.46870 -11.36835 -11.28933 -11.12618 -11.08485 -10.94554 -10.69138 -10.48927 -9.91660 -9.83019 -9.43374 -9.08105 -8.87910 -8.66471 -7.92473 -7.50878 -7.00237 -6.68757 -4.30066 1.07949 1.26912 2.55285 2.80892 2.98794 3.08863 3.11778 3.12559 3.15562 3.33521 3.54991 3.83175 3.95252 4.49940 4.60072 4.62950 4.68656 4.70855 4.78113 4.91763 4.94378 5.00025 5.05510 5.18282 5.23786 5.28499 5.35133 5.44647 5.46709 5.70370 5.72161 5.86926 5.96558 6.03980 6.06729 6.14934 6.28208 6.41099 6.47074 6.80053 6.92470 7.02381 7.05813 7.18295 7.29876 7.46909 7.62257 7.69595 7.98283 8.07381 8.20267 8.32081 8.65471 8.75686 8.90471 9.01589 10.23153 Molecular weight = 355.16amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002214 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.914914 B =12643.106509 C =13667.700639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.098 0.902 5 O -0.268 6.268 6 C 0.107 3.893 7 C -0.179 4.179 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.175 4.175 11 C 0.100 3.900 12 O -0.301 6.301 13 C 0.027 3.973 14 C 0.496 3.504 15 O -0.500 6.500 16 N -0.648 5.648 17 C -0.008 4.008 18 C -0.085 4.085 19 C -0.155 4.155 20 C 0.105 3.895 21 C -0.457 4.457 22 H 0.077 0.923 23 C 0.071 3.929 24 N -0.792 5.792 25 Si 0.912 3.088 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.215 4.215 30 C -0.103 4.103 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.393 0.607 44 H 0.104 0.896 45 H 0.125 0.875 46 H 0.281 0.719 47 H 0.096 0.904 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.067 0.821 -1.725 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.116 0.884 5 O -0.180 6.180 6 C 0.061 3.939 7 C -0.198 4.198 8 C -0.135 4.135 9 C -0.140 4.140 10 C -0.194 4.194 11 C 0.055 3.945 12 O -0.214 6.214 13 C -0.068 4.068 14 C 0.281 3.719 15 O -0.374 6.374 16 N -0.293 5.293 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.175 4.175 20 C 0.103 3.897 21 C -0.487 4.487 22 H 0.096 0.904 23 C -0.147 4.147 24 N -0.417 5.417 25 Si 0.736 3.264 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.235 4.235 30 C -0.123 4.123 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.227 0.773 44 H 0.122 0.878 45 H 0.142 0.858 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.204 1.099 -2.863 22.415 hybrid contribution 0.251 0.104 0.445 0.521 sum -21.954 1.203 -2.418 22.119 Atomic orbital electron populations 1.21957 0.94661 1.02415 1.02263 1.22000 0.97088 0.94239 1.04344 1.22415 0.93957 0.95028 0.87991 0.88449 1.86345 1.40369 1.59087 1.32174 1.18350 0.88879 0.93792 0.92841 1.21235 0.97387 1.03720 0.97450 1.20826 0.96862 0.97180 0.98677 1.20820 1.00033 1.00441 0.92718 1.21060 0.95739 1.02142 1.00416 1.18301 0.92515 0.97193 0.86527 1.86275 1.49793 1.65463 1.19844 1.23067 1.00913 0.94978 0.87870 1.20154 0.88631 0.79342 0.83822 1.90766 1.64016 1.44559 1.38037 1.42819 1.07276 1.59980 1.19220 1.17155 0.80097 1.17351 0.95360 1.20544 0.93669 0.99741 0.96495 1.21116 0.93016 1.04402 0.98962 1.17699 0.93212 0.87677 0.91149 1.19556 0.91578 1.40979 0.96549 0.90438 1.25957 1.01478 0.92564 0.94663 1.69840 1.38025 1.29699 1.04155 0.86269 0.81844 0.79046 0.79191 1.19233 1.20322 1.18723 1.20564 0.92225 1.11957 0.98791 1.20053 0.95338 1.02503 0.94404 0.92335 0.92000 0.91952 0.89885 0.89714 0.84291 0.85626 0.85737 0.84894 0.92916 0.92782 0.88125 0.77317 0.87772 0.85756 0.90780 0.88610 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.45 37.16 0.31 -1.05 16 2 C -0.14 -1.50 5.61 -26.73 -0.15 -1.65 16 3 C 0.07 0.92 2.55 -27.89 -0.07 0.85 16 4 H 0.10 1.10 5.48 -51.93 -0.28 0.81 16 5 O -0.27 -4.42 8.92 -47.33 -0.42 -4.84 16 6 C 0.11 1.50 5.64 -39.12 -0.22 1.28 16 7 C -0.18 -1.93 7.26 -39.46 -0.29 -2.22 16 8 C -0.12 -1.06 10.04 -39.58 -0.40 -1.46 16 9 C -0.12 -1.09 10.04 -39.57 -0.40 -1.48 16 10 C -0.17 -1.79 9.04 -39.46 -0.36 -2.14 16 11 C 0.10 1.36 6.70 -39.12 -0.26 1.09 16 12 O -0.30 -4.34 10.28 -34.24 -0.35 -4.69 16 13 C 0.03 0.24 9.81 101.05 0.99 1.24 16 14 C 0.50 9.29 7.00 -10.99 -0.08 9.21 16 15 O -0.50 -12.12 14.04 -14.30 -0.20 -12.32 16 16 N -0.65 -11.43 5.22 -9.74 -0.05 -11.48 16 17 C -0.01 -0.18 6.27 -83.57 -0.52 -0.70 16 18 C -0.08 -2.15 8.60 -39.79 -0.34 -2.50 16 19 C -0.16 -4.23 8.62 -39.26 -0.34 -4.56 16 20 C 0.11 2.85 5.58 -106.80 -0.60 2.25 16 21 C -0.46 -12.21 9.05 -37.85 -0.34 -12.55 16 22 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 23 C 0.07 1.82 5.23 -17.33 -0.09 1.73 16 24 N -0.79 -21.24 10.75 55.55 0.60 -20.64 16 25 Si 0.91 18.97 29.58 -169.99 -5.03 13.94 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 28 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 29 C -0.22 -5.24 9.74 -39.26 -0.38 -5.62 16 30 C -0.10 -2.26 9.90 -39.79 -0.39 -2.65 16 31 H 0.06 0.42 6.65 -51.93 -0.35 0.07 16 32 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.75 7.65 -51.93 -0.40 0.35 16 36 H 0.14 1.24 4.20 -52.48 -0.22 1.02 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.39 5.15 8.37 -40.82 -0.34 4.81 16 44 H 0.10 2.70 6.36 -52.49 -0.33 2.36 16 45 H 0.12 3.53 6.07 -52.49 -0.32 3.21 16 46 H 0.28 6.89 8.30 -40.82 -0.34 6.56 16 47 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 48 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -34.26 390.93 -9.70 -43.96 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.21 Total: 11.10 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -3.92 Total: -20.93 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.55 Total: -32.11 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.98 Total: -21.85 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.26 -9.70 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016576838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.052 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds