Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86800 * 120.00417 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00213 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47214 * 119.99679 * 3 2 1 7 7 C 1.39935 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99730 * 180.02562 * 7 2 1 9 9 C 1.39687 * 120.00147 * 0.02562 * 7 2 1 10 10 O 1.22073 * 119.99662 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00226 * 180.27175 * 9 7 2 12 12 C 1.37016 * 120.00302 * 179.72694 * 11 9 7 13 13 N 1.31643 * 125.99981 * 359.69176 * 12 11 9 14 14 N 1.26119 * 117.48772 * 179.75789 * 13 12 11 15 15 C 1.31804 * 117.42670 * 0.55389 * 14 13 12 16 16 S 1.76197 * 126.01681 * 179.72297 * 15 14 13 17 17 C 1.80995 * 100.00047 * 359.97438 * 16 15 14 18 18 C 1.50702 * 109.47121 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.01077 * 89.99741 * 18 17 16 20 20 C 1.38215 * 120.01480 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.02629 * 359.97438 * 20 19 18 22 22 C 1.38192 * 120.01557 * 359.97438 * 21 20 19 23 23 C 1.38337 * 120.00377 * 269.72798 * 18 17 16 24 24 Cl 1.73597 * 120.01297 * 359.96994 * 23 18 17 25 25 S 1.76421 * 107.96006 * 359.70802 * 15 14 13 26 26 H 0.96999 * 119.99814 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00112 * 359.73019 * 11 9 7 28 28 H 1.08998 * 109.47141 * 299.99568 * 17 16 15 29 29 H 1.08997 * 109.47339 * 60.00063 * 17 16 15 30 30 H 1.08000 * 119.98882 * 359.97438 * 19 18 17 31 31 H 1.08001 * 119.98961 * 179.97438 * 20 19 18 32 32 H 1.08000 * 119.99003 * 179.97438 * 21 20 19 33 33 H 1.07996 * 120.00592 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6963 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0954 1.6963 1.2125 7 6 2.0072 -1.2119 0.0005 8 1 3.0872 -1.2119 0.0010 9 6 1.3087 -2.4216 0.0005 10 8 0.0880 -2.4215 -0.0004 11 7 1.9825 -3.5888 0.0066 12 6 1.2975 -4.7754 0.0123 13 7 -0.0117 -4.9130 0.0182 14 7 -0.4737 -6.0865 0.0181 15 6 0.3924 -7.0799 0.0234 16 16 -0.0009 -8.7974 0.0314 17 6 -1.8086 -8.7059 0.0307 18 6 -2.3821 -10.0995 0.0365 19 6 -2.6455 -10.7338 1.2362 20 6 -3.1710 -12.0121 1.2416 21 6 -3.4342 -12.6570 0.0473 22 6 -3.1723 -12.0236 -1.1527 23 6 -2.6504 -10.7421 -1.1588 24 17 -2.3273 -9.9432 -2.6658 25 16 2.0149 -6.3871 0.0207 26 1 -0.4850 0.8400 -0.0004 27 1 2.9526 -3.5889 0.0070 28 1 -2.1456 -8.1702 0.9181 29 1 -2.1453 -8.1786 -0.8618 30 1 -2.4397 -10.2306 2.1694 31 1 -3.3762 -12.5074 2.1792 32 1 -3.8444 -13.6561 0.0522 33 1 -3.3783 -12.5274 -2.0855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016741702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = 48.247009 kcal Electronic energy + Delta-G solvation = -22143.152348 eV Core-core repulsion = 18448.368141 eV Total energy + Delta-G solvation = -3694.784207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 354.996 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03769 -39.71149 -37.96423 -36.64090 -34.08131 -33.25360 -32.57497 -31.06500 -29.86889 -27.56878 -27.14837 -25.23911 -23.05235 -22.15871 -21.92700 -19.64207 -19.11424 -17.74054 -17.15542 -16.82661 -16.08245 -15.91993 -15.63621 -15.58365 -15.14715 -14.61587 -14.17270 -14.02637 -13.55556 -13.33312 -13.22141 -12.88434 -12.83005 -12.72996 -11.92373 -11.75908 -11.68329 -11.54177 -11.29304 -11.08084 -10.90341 -10.82949 -10.53571 -10.50005 -10.17406 -9.53169 -9.48813 -9.20477 -9.09647 -8.94118 -8.27471 -7.89541 -7.10262 -6.54881 -5.14993 0.49985 0.86463 0.97661 1.06165 1.58360 1.86612 1.92250 2.20441 2.97412 3.03574 3.06243 3.23819 3.34507 3.80691 4.11239 4.22711 4.25746 4.40627 4.60747 4.86096 4.96864 5.18569 5.22785 5.45065 5.50090 5.52993 5.63280 5.71755 5.85010 5.99444 6.05678 6.42106 7.03152 7.14514 7.58326 7.75477 8.58042 8.82178 9.32738 10.17527 10.36303 Molecular weight = 355.00amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.002097 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.456305 B =13351.360493 C =13583.151575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.084 3.916 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.522 3.478 10 O -0.515 6.515 11 N -0.621 5.621 12 C 0.308 3.692 13 N -0.274 5.274 14 N -0.217 5.217 15 C -0.077 4.077 16 S 0.009 5.991 17 C -0.074 4.074 18 C -0.066 4.066 19 C -0.089 4.089 20 C -0.116 4.116 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.021 4.021 24 Cl -0.055 7.055 25 S 0.046 5.954 26 H 0.278 0.722 27 H 0.406 0.594 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -22.590 0.505 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.141 4.141 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.093 0.907 9 C 0.330 3.670 10 O -0.392 6.392 11 N -0.269 5.269 12 C -0.065 4.065 13 N -0.124 5.124 14 N -0.060 5.060 15 C -0.467 4.467 16 S 0.239 5.761 17 C -0.223 4.223 18 C -0.069 4.069 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.050 4.050 24 Cl -0.026 7.026 25 S 0.280 5.720 26 H 0.089 0.911 27 H 0.242 0.758 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.860 -22.948 0.368 23.026 hybrid contribution 0.329 1.987 -0.176 2.022 sum -1.532 -20.961 0.193 21.018 Atomic orbital electron populations 1.70059 1.07340 1.28627 1.29987 1.25783 0.94798 1.00950 0.92592 0.86196 0.79770 0.79770 0.79834 1.18850 1.20112 1.18843 1.19503 0.94741 0.89629 1.52077 0.90744 1.16989 0.88437 0.81132 0.80454 1.90917 1.12476 1.83600 1.52244 1.44370 1.09976 1.02199 1.70404 1.27630 0.91104 0.91157 0.96618 1.72255 1.05679 1.10306 1.24170 1.72242 1.28896 0.93175 1.11680 1.30676 0.93344 1.04156 1.18529 1.85332 1.04233 0.93502 1.93025 1.22520 0.94674 0.96146 1.08965 1.19204 1.00366 0.95049 0.92299 1.21115 0.97653 0.94953 0.97170 1.21253 0.98744 0.94791 0.98595 1.21169 0.99309 1.00135 0.91760 1.21063 0.99532 0.92985 0.99456 1.20906 1.02573 0.94310 0.87202 1.98404 1.93912 1.79564 1.30731 1.85238 1.08806 1.01502 1.76411 0.91056 0.75773 0.87236 0.87035 0.84526 0.85085 0.84997 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.75 11.68 55.54 0.65 -20.10 16 2 C 0.08 2.17 5.49 -17.38 -0.10 2.07 16 3 Si 0.92 18.53 29.56 -169.99 -5.02 13.51 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.52 -13.64 9.20 -38.41 -0.35 -13.99 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.52 14.31 7.45 -15.72 -0.12 14.20 16 10 O -0.52 -16.50 13.47 4.85 0.07 -16.43 16 11 N -0.62 -13.77 5.31 -14.88 -0.08 -13.85 16 12 C 0.31 6.79 8.35 -87.59 -0.73 6.05 16 13 N -0.27 -6.88 9.79 30.88 0.30 -6.57 16 14 N -0.22 -4.73 11.03 31.55 0.35 -4.38 16 15 C -0.08 -1.39 7.87 52.75 0.42 -0.98 16 16 S 0.01 0.12 22.29 -107.50 -2.40 -2.27 16 17 C -0.07 -0.96 4.95 36.01 0.18 -0.78 16 18 C -0.07 -0.72 5.14 -104.58 -0.54 -1.26 16 19 C -0.09 -0.78 9.70 -39.59 -0.38 -1.17 16 20 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 21 C -0.10 -0.71 10.05 -39.59 -0.40 -1.11 16 22 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 23 C -0.02 -0.22 6.31 -39.49 -0.25 -0.47 16 24 Cl -0.06 -0.64 27.29 -51.86 -1.42 -2.05 16 25 S 0.05 0.77 23.51 -107.50 -2.53 -1.76 16 26 H 0.28 7.08 8.29 -40.82 -0.34 6.75 16 27 H 0.41 7.18 8.76 -40.82 -0.36 6.82 16 28 H 0.11 1.42 8.09 -51.92 -0.42 1.00 16 29 H 0.11 1.60 6.89 -51.92 -0.36 1.24 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -34.44 341.76 -10.36 -44.80 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.37 Total: 3.91 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.06 Total: 0.05 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 1.22 Total: -44.90 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.07 Total: -16.43 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -4.92 Total: -4.03 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.42 Total: -2.05 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.44 -10.36 -44.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016741702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.046 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds