Wall clock time and date at job start Tue Mar 31 2020 05:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38165 * 120.02768 * 2 1 4 4 C 1.38245 * 120.05689 * 179.97438 * 3 2 1 5 5 C 1.38286 * 120.11268 * 359.97438 * 4 3 2 6 6 C 1.38126 * 120.05417 * 0.02562 * 5 4 3 7 7 C 1.38714 * 120.03100 * 179.97438 * 2 1 3 8 8 O 1.35900 * 120.05544 * 359.97438 * 7 2 1 9 9 C 1.42901 * 117.00249 * 180.02562 * 8 7 2 10 10 C 1.50697 * 109.46992 * 180.02562 * 9 8 7 11 11 O 1.21313 * 120.00548 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99849 * 179.97438 * 10 9 8 13 13 N 1.40101 * 120.00247 * 179.97438 * 12 10 9 14 14 C 1.29820 * 120.00401 * 180.02562 * 13 12 10 15 15 C 1.47349 * 120.00403 * 179.97438 * 14 13 12 16 16 C 1.39820 * 120.08707 * 359.72832 * 15 14 13 17 17 C 1.37710 * 119.90895 * 179.73998 * 16 15 14 18 18 C 1.39078 * 120.09019 * 0.53212 * 17 16 15 19 19 O 1.35655 * 119.90925 * 179.69815 * 18 17 16 20 20 C 1.34812 * 116.99703 * 174.47254 * 19 18 17 21 21 H 1.07995 * 119.99981 * 5.05366 * 20 19 18 22 22 C 1.38643 * 119.99894 * 185.06102 * 20 19 18 23 23 N 1.31559 * 120.00283 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47219 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47518 * 119.99719 * 24 22 20 27 27 H 1.48504 * 109.47212 * 239.99686 * 24 22 20 28 28 C 1.39078 * 120.17644 * 359.72012 * 18 17 16 29 29 C 1.37718 * 120.08599 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47094 * 270.02073 * 1 2 3 31 31 H 1.08999 * 109.47150 * 30.02576 * 1 2 3 32 32 H 1.09009 * 109.47168 * 150.02167 * 1 2 3 33 33 H 1.07995 * 119.97339 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.94760 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.97520 * 180.28197 * 5 4 3 36 36 H 1.08002 * 120.02814 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46892 * 299.99991 * 9 8 7 38 38 H 1.08993 * 109.46848 * 60.00149 * 9 8 7 39 39 H 0.96995 * 119.99728 * 0.02562 * 12 10 9 40 40 H 1.08007 * 119.99679 * 0.02562 * 14 13 12 41 41 H 1.07995 * 120.03933 * 359.97438 * 16 15 14 42 42 H 1.08009 * 119.95320 * 180.25784 * 17 16 15 43 43 H 0.96994 * 120.00502 * 180.02562 * 23 22 20 44 44 H 1.07997 * 119.95775 * 179.97438 * 28 18 17 45 45 H 1.07994 * 120.04136 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0016 6 6 3.5887 -1.1975 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5235 -2.3789 0.0016 9 6 2.3035 -3.5762 0.0027 10 6 1.3872 -4.7726 0.0031 11 8 0.1843 -4.6155 0.0030 12 7 1.9042 -6.0173 0.0036 13 7 1.0525 -7.1297 0.0045 14 6 1.5504 -8.3286 0.0055 15 6 0.6546 -9.4985 0.0071 16 6 -0.7321 -9.3195 0.0132 17 6 -1.5659 -10.4155 0.0093 18 6 -1.0305 -11.6991 0.0103 19 8 -1.8553 -12.7760 0.0126 20 6 -1.2783 -13.9890 -0.1023 21 1 -0.2019 -14.0765 -0.1084 22 6 -2.0667 -15.1241 -0.2126 23 7 -3.3780 -15.0175 -0.2047 24 14 -1.2672 -16.8049 -0.3709 25 1 0.2100 -16.6540 -0.3534 26 1 -1.6910 -17.6636 0.7640 27 1 -1.6850 -17.4332 -1.6500 28 6 0.3483 -11.8814 0.0095 29 6 1.1889 -10.7905 0.0081 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6584 2.1315 -0.0004 34 1 4.1195 2.1330 0.0010 35 1 5.3552 0.0042 0.0066 36 1 4.1314 -2.1313 0.0029 37 1 2.9323 -3.6009 -0.8873 38 1 2.9323 -3.5993 0.8926 39 1 2.8660 -6.1430 0.0040 40 1 2.6214 -8.4685 0.0060 41 1 -1.1486 -8.3231 0.0173 42 1 -2.6372 -10.2780 0.0098 43 1 -3.9296 -15.8116 -0.2815 44 1 0.7603 -12.8797 0.0107 45 1 2.2594 -10.9329 0.0079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017415709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:16 Heat of formation + Delta-G solvation = -3.189300 kcal Electronic energy + Delta-G solvation = -27927.356786 eV Core-core repulsion = 23684.361340 eV Total energy + Delta-G solvation = -4242.995445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.83057 -39.55663 -39.12287 -37.73266 -37.06300 -35.83361 -33.22731 -32.76309 -32.21763 -30.62610 -30.35889 -29.37175 -27.91430 -27.00500 -25.63189 -23.40118 -22.54881 -22.03338 -21.93976 -20.77192 -20.27320 -18.59503 -18.24255 -17.74513 -17.01320 -16.80391 -16.68535 -16.15265 -16.00692 -15.02427 -14.89364 -14.74384 -14.65530 -14.48383 -14.25790 -13.83085 -13.73432 -13.56854 -13.50553 -13.08768 -12.86034 -12.69755 -12.58498 -12.49852 -12.34543 -11.81818 -11.71189 -11.55497 -11.36062 -11.31424 -11.24098 -10.98657 -10.80911 -10.52330 -10.20259 -9.96337 -9.46683 -9.29980 -9.24764 -8.80386 -8.53216 -8.32156 -7.16258 -6.60972 -4.17352 0.89969 1.02222 1.29056 1.91836 2.18145 2.33310 2.95009 3.05506 3.10352 3.10945 3.11827 3.33897 3.84499 4.09692 4.32376 4.44195 4.47368 4.52232 4.55710 4.65968 4.81048 4.90388 4.94158 4.96733 5.04323 5.15651 5.17434 5.31523 5.46440 5.49347 5.52689 5.71504 5.88313 5.90025 5.92658 6.05952 6.11186 6.13977 6.30355 6.35267 6.59022 6.77090 6.85597 6.93904 6.96514 7.14392 7.16793 7.29541 7.53844 7.67212 7.84027 8.34246 8.83721 9.51268 10.55883 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.001286 C = 0.001245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.250100 B =21775.683913 C =22481.258981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.084 4.084 4 C -0.154 4.154 5 C -0.087 4.087 6 C -0.208 4.208 7 C 0.127 3.873 8 O -0.284 6.284 9 C 0.049 3.951 10 C 0.529 3.471 11 O -0.482 6.482 12 N -0.585 5.585 13 N -0.266 5.266 14 C 0.155 3.845 15 C -0.177 4.177 16 C -0.024 4.024 17 C -0.201 4.201 18 C 0.170 3.830 19 O -0.165 6.165 20 C -0.393 4.393 21 H 0.097 0.903 22 C 0.041 3.959 23 N -0.853 5.853 24 Si 0.944 3.056 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.033 4.033 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.379 0.621 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.273 0.727 44 H 0.132 0.868 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.934 25.407 0.271 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.102 4.102 4 C -0.172 4.172 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.082 3.918 8 O -0.197 6.197 9 C -0.032 4.032 10 C 0.313 3.687 11 O -0.352 6.352 12 N -0.328 5.328 13 N -0.072 5.072 14 C -0.052 4.052 15 C -0.181 4.181 16 C -0.044 4.044 17 C -0.220 4.220 18 C 0.113 3.887 19 O -0.065 6.065 20 C -0.469 4.469 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.486 5.486 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.216 0.784 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.150 0.850 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.611 26.005 0.274 30.332 hybrid contribution 2.257 -1.387 -0.064 2.650 sum 17.868 24.617 0.210 30.419 Atomic orbital electron populations 1.20666 0.90142 1.03165 1.02670 1.19338 0.96894 0.90124 1.04707 1.20929 0.94156 0.96802 0.98318 1.21068 0.94235 0.98159 1.03781 1.20926 0.99825 0.91827 0.97932 1.21246 0.92748 0.99652 1.08975 1.18874 0.90427 0.85319 0.97214 1.86150 1.33865 1.11102 1.88536 1.22343 0.93404 0.83362 1.04047 1.19681 0.89315 0.82023 0.77641 1.90784 1.14862 1.84882 1.44669 1.46668 1.07446 1.04109 1.74538 1.75206 1.19398 0.94299 1.18277 1.24471 0.97445 0.90471 0.92844 1.17770 0.92297 0.89870 1.18143 1.20919 0.91961 0.97974 0.93580 1.20207 1.00021 0.89714 1.12077 1.19602 0.89650 0.88439 0.90991 1.83949 1.33851 1.12801 1.75942 1.21487 0.93036 0.80293 1.52072 0.88533 1.25375 0.95419 0.99581 0.96114 1.70045 1.03631 1.30649 1.44253 0.85594 0.79107 0.80003 0.78437 1.18917 1.19983 1.19976 1.21041 0.93063 0.99369 1.12675 1.20772 0.98389 0.90940 0.95231 0.91144 0.91629 0.90590 0.85268 0.85858 0.85755 0.85429 0.88731 0.88714 0.78416 0.87469 0.85637 0.86046 0.91711 0.85028 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.79 36.00 0.35 -0.60 16 2 C -0.11 -1.02 5.89 -104.48 -0.62 -1.63 16 3 C -0.08 -0.62 9.70 -39.61 -0.38 -1.00 16 4 C -0.15 -1.02 10.04 -39.56 -0.40 -1.41 16 5 C -0.09 -0.57 10.04 -39.60 -0.40 -0.97 16 6 C -0.21 -1.55 9.04 -39.43 -0.36 -1.90 16 7 C 0.13 1.24 6.66 -39.22 -0.26 0.98 16 8 O -0.28 -3.22 8.72 -39.33 -0.34 -3.56 16 9 C 0.05 0.40 5.22 36.00 0.19 0.59 16 10 C 0.53 6.77 8.02 -10.98 -0.09 6.68 16 11 O -0.48 -8.79 16.84 -14.38 -0.24 -9.03 16 12 N -0.58 -6.71 6.26 31.22 0.20 -6.51 16 13 N -0.27 -4.04 10.15 32.14 0.33 -3.72 16 14 C 0.15 2.10 10.74 -14.70 -0.16 1.94 16 15 C -0.18 -2.93 5.87 -105.01 -0.62 -3.55 16 16 C -0.02 -0.45 9.57 -39.18 -0.37 -0.82 16 17 C -0.20 -4.18 9.97 -39.46 -0.39 -4.58 16 18 C 0.17 3.91 6.65 -38.96 -0.26 3.65 16 19 O -0.16 -4.50 9.75 0.39 0.00 -4.49 16 20 C -0.39 -10.40 9.48 30.88 0.29 -10.11 16 21 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.85 -24.03 13.67 55.48 0.76 -23.27 16 24 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 C -0.24 -4.82 9.15 -39.46 -0.36 -5.19 16 29 C -0.03 -0.53 9.78 -39.18 -0.38 -0.92 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.08 0.80 7.53 -51.92 -0.39 0.40 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 36 H 0.13 0.64 6.30 -52.49 -0.33 0.31 16 37 H 0.09 0.51 7.66 -51.93 -0.40 0.11 16 38 H 0.10 0.51 7.66 -51.93 -0.40 0.11 16 39 H 0.38 2.59 8.65 -182.60 -1.58 1.01 16 40 H 0.11 1.01 8.02 -52.48 -0.42 0.59 16 41 H 0.13 2.28 7.55 -52.49 -0.40 1.88 16 42 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 44 H 0.13 2.58 5.62 -52.49 -0.29 2.29 16 45 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -34.76 396.39 -9.23 -44.00 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.57 Total: 4.06 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -4.31 Total: -17.87 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 1.28 Total: -33.50 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.58 Total: -17.09 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.76 -9.23 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017415709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.807 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds