Wall clock time and date at job start Tue Mar 31 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21454 * 120.00010 * 2 1 4 4 C 1.40973 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.36143 * 126.69146 * 174.63038 * 4 2 1 6 6 O 1.35257 * 125.43973 * 0.02877 * 5 4 2 7 7 C 1.47294 * 109.12409 * 179.97438 * 5 4 2 8 8 O 1.21634 * 124.95794 * 179.97438 * 7 5 4 9 9 N 1.34510 * 110.09371 * 0.02562 * 7 5 4 10 10 C 1.35997 * 125.98765 * 180.02562 * 9 7 5 11 11 H 1.08004 * 119.99879 * 24.67342 * 10 9 7 12 12 C 1.39698 * 120.00089 * 204.67626 * 10 9 7 13 13 N 1.30956 * 119.99658 * 18.62179 * 12 10 9 14 14 Si 1.86801 * 120.00191 * 198.62519 * 12 10 9 15 15 H 1.48504 * 109.46688 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46793 * 119.99879 * 14 12 10 17 17 H 1.48500 * 109.46881 * 240.00014 * 14 12 10 18 18 C 1.46755 * 108.02446 * 359.97438 * 9 7 5 19 19 H 1.08998 * 110.17084 * 119.19459 * 18 9 7 20 20 C 1.50695 * 110.12309 * 240.82995 * 18 9 7 21 21 C 1.38244 * 119.98948 * 51.46502 * 20 18 9 22 22 C 1.38206 * 120.02111 * 180.27432 * 21 20 18 23 23 C 1.38371 * 120.01710 * 359.45493 * 22 21 20 24 24 Cl 1.73598 * 120.01029 * 180.25173 * 23 22 21 25 25 C 1.38310 * 119.98431 * 0.26868 * 23 22 21 26 26 C 1.38342 * 119.99566 * 231.19175 * 20 18 9 27 27 Cl 1.73596 * 120.00433 * 359.97438 * 26 20 18 28 28 H 1.08994 * 109.47353 * 183.67407 * 1 2 3 29 29 H 1.09003 * 109.47043 * 303.67754 * 1 2 3 30 30 H 1.09008 * 109.47346 * 63.67210 * 1 2 3 31 31 H 0.96702 * 113.99822 * 179.97438 * 6 5 4 32 32 H 0.97006 * 119.99711 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.99182 * 0.02562 * 21 20 18 34 34 H 1.08004 * 119.99079 * 179.72959 * 22 21 20 35 35 H 1.08007 * 120.01153 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2118 -1.2209 -0.0005 5 6 3.5598 -1.3819 -0.1028 6 8 4.4623 -0.3816 -0.2222 7 6 3.8787 -2.8193 -0.0612 8 8 4.9994 -3.2869 -0.1310 9 7 2.7496 -3.5396 0.0640 10 6 2.6704 -4.8955 0.1345 11 1 3.5161 -5.4683 0.4855 12 6 1.4952 -5.5473 -0.2470 13 7 0.6187 -4.9299 -0.9990 14 14 1.1741 -7.2994 0.3155 15 1 2.3104 -7.7677 1.1491 16 1 -0.0769 -7.3412 1.1145 17 1 1.0339 -8.1821 -0.8704 18 6 1.6184 -2.6060 0.1125 19 1 0.9411 -2.7927 -0.7208 20 6 0.8829 -2.7502 1.4199 21 6 1.5784 -2.6968 2.6135 22 6 0.9053 -2.8345 3.8127 23 6 -0.4666 -3.0147 3.8198 24 17 -1.3127 -3.1812 5.3264 25 6 -1.1637 -3.0625 2.6261 26 6 -0.4887 -2.9302 1.4257 27 17 -1.3628 -2.9894 -0.0730 28 1 -0.3634 -1.0255 0.0658 29 1 -0.3633 0.5699 0.8552 30 1 -0.3634 0.4558 -0.9211 31 1 5.3789 -0.6839 -0.2825 32 1 -0.1972 -5.3827 -1.2643 33 1 2.6485 -2.5514 2.6088 34 1 1.4497 -2.7971 4.7448 35 1 -2.2345 -3.2035 2.6311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017822292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:54 Heat of formation + Delta-G solvation = -59.759543 kcal Electronic energy + Delta-G solvation = -27910.808933 eV Core-core repulsion = 23734.251882 eV Total energy + Delta-G solvation = -4176.557051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 355.021 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91070 -39.00203 -38.30262 -37.15464 -36.58405 -36.02715 -35.46053 -33.46242 -31.39720 -30.77328 -30.44524 -29.35879 -25.77413 -25.68042 -23.01956 -22.65988 -21.38957 -20.42262 -18.47171 -17.88333 -17.41754 -16.96316 -16.15140 -15.71855 -15.26655 -15.02930 -14.77262 -14.63141 -14.15661 -14.07635 -13.98257 -13.78084 -13.60600 -13.36180 -12.88745 -12.71362 -12.42772 -12.31540 -11.96315 -11.69889 -11.60405 -11.51835 -11.36938 -11.16766 -10.95488 -10.86729 -10.62657 -10.61703 -10.41778 -9.70780 -9.38107 -8.78138 -8.74448 -8.45489 -8.24239 -8.07229 -6.86054 -4.30855 1.08615 1.17768 1.29346 1.98869 2.53545 2.89177 3.02485 3.06570 3.17170 3.54347 3.72920 3.94304 4.07272 4.38184 4.62595 4.77439 4.87628 5.02063 5.14733 5.16501 5.39775 5.46745 5.60064 5.64834 5.82243 5.86026 6.10575 6.15658 6.24594 6.30461 6.46638 6.59122 6.72830 6.81574 7.05333 7.34357 7.69125 7.98729 8.21318 8.62292 8.70959 9.49889 10.13345 Molecular weight = 355.02amu Principal moments of inertia in cm(-1) A = 0.008269 B = 0.006524 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.408099 B = 4290.738446 C = 5639.304467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.418 3.582 3 O -0.481 6.481 4 C -0.309 4.309 5 C 0.162 3.838 6 O -0.426 6.426 7 C 0.404 3.596 8 O -0.584 6.584 9 N -0.368 5.368 10 C -0.302 4.302 11 H 0.113 0.887 12 C 0.051 3.949 13 N -0.820 5.820 14 Si 0.921 3.079 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.274 1.274 18 C 0.197 3.803 19 H 0.155 0.845 20 C -0.034 4.034 21 C -0.071 4.071 22 C -0.108 4.108 23 C -0.029 4.029 24 Cl -0.073 7.073 25 C -0.110 4.110 26 C -0.007 4.007 27 Cl -0.031 7.031 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.403 0.597 32 H 0.284 0.716 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 2.525 5.990 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C 0.301 3.699 3 O -0.361 6.361 4 C -0.316 4.316 5 C 0.106 3.894 6 O -0.225 6.225 7 C 0.195 3.805 8 O -0.473 6.473 9 N -0.082 5.082 10 C -0.429 4.429 11 H 0.130 0.870 12 C -0.162 4.162 13 N -0.453 5.453 14 Si 0.746 3.254 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.199 1.199 18 C 0.093 3.907 19 H 0.171 0.829 20 C -0.035 4.035 21 C -0.090 4.090 22 C -0.127 4.127 23 C -0.056 4.056 24 Cl -0.044 7.044 25 C -0.130 4.130 26 C -0.034 4.034 27 Cl -0.001 7.001 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.137 3.039 5.868 9.726 hybrid contribution 0.007 -1.257 0.147 1.266 sum -7.130 1.782 6.015 9.497 Atomic orbital electron populations 1.22479 0.95067 1.05552 1.03763 1.19830 0.91107 0.86788 0.72151 1.90558 1.72080 1.33950 1.39541 1.20939 0.91998 0.96442 1.22176 1.21914 0.90096 0.89193 0.88168 1.84879 1.20448 1.31010 1.86157 1.18583 0.86442 0.85843 0.89611 1.90689 1.21855 1.75253 1.59499 1.43374 1.04493 1.05396 1.54908 1.19621 1.01980 0.78555 1.42746 0.86959 1.25530 0.95724 1.00750 0.94161 1.69588 1.09764 1.39183 1.26755 0.85914 0.79370 0.80890 0.79275 1.18551 1.19641 1.19943 1.19444 0.90768 0.84093 0.96418 0.82856 1.19661 0.91433 0.96823 0.95603 1.20893 1.00449 0.97216 0.90475 1.21030 0.92027 1.00535 0.99106 1.20620 0.92565 1.05940 0.86518 1.98352 1.77930 1.96303 1.31823 1.20769 1.00598 1.02355 0.89268 1.20532 0.91941 1.03350 0.87624 1.98366 1.74885 1.95779 1.31099 0.89460 0.89929 0.89497 0.74375 0.90504 0.84809 0.84641 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.24 10.05 36.00 0.36 -2.87 16 2 C 0.42 7.96 6.99 -33.27 -0.23 7.72 16 3 O -0.48 -10.34 16.85 -8.79 -0.15 -10.49 16 4 C -0.31 -6.18 5.24 -104.14 -0.55 -6.73 16 5 C 0.16 3.36 7.38 -36.65 -0.27 3.09 16 6 O -0.43 -7.90 12.72 -33.42 -0.42 -8.32 16 7 C 0.40 9.41 7.89 -12.70 -0.10 9.31 16 8 O -0.58 -15.04 17.60 5.24 0.09 -14.95 16 9 N -0.37 -8.44 2.47 -111.18 -0.27 -8.72 16 10 C -0.30 -7.19 9.49 -15.16 -0.14 -7.33 16 11 H 0.11 2.78 7.91 -52.48 -0.42 2.37 16 12 C 0.05 1.12 5.13 -17.38 -0.09 1.03 16 13 N -0.82 -17.81 9.40 55.53 0.52 -17.29 16 14 Si 0.92 17.78 29.60 -169.99 -5.03 12.75 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 C 0.20 3.99 1.60 -69.89 -0.11 3.88 16 19 H 0.15 3.26 4.59 -51.93 -0.24 3.02 16 20 C -0.03 -0.61 3.88 -104.58 -0.41 -1.01 16 21 C -0.07 -1.21 9.19 -39.59 -0.36 -1.58 16 22 C -0.11 -1.57 9.83 -39.54 -0.39 -1.96 16 23 C -0.03 -0.41 6.32 -39.51 -0.25 -0.66 16 24 Cl -0.07 -0.89 28.96 -51.86 -1.50 -2.39 16 25 C -0.11 -1.60 9.62 -39.51 -0.38 -1.98 16 26 C -0.01 -0.11 5.39 -39.50 -0.21 -0.32 16 27 Cl -0.03 -0.49 22.93 -51.86 -1.19 -1.68 16 28 H 0.09 1.34 2.46 -51.93 -0.13 1.21 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.19 8.14 -51.92 -0.42 0.76 16 31 H 0.40 5.75 8.86 45.56 0.40 6.16 16 32 H 0.28 5.80 8.30 -40.82 -0.34 5.47 16 33 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -28.02 332.39 -7.70 -35.73 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -1.63 Total: 9.74 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.13 Total: 0.60 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.25 Total: -26.01 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.48 Total: -33.76 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -2.69 Total: -4.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.02 -7.70 -35.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017822292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.033 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds