Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21447 * 120.00358 * 2 1 4 4 C 1.40974 * 119.99620 * 180.02562 * 2 1 3 5 5 C 1.36155 * 126.68821 * 186.83735 * 4 2 1 6 6 O 1.35259 * 125.43744 * 359.96943 * 5 4 2 7 7 C 1.47286 * 109.12246 * 179.70665 * 5 4 2 8 8 O 1.21636 * 124.95313 * 180.26630 * 7 5 4 9 9 N 1.34506 * 110.09654 * 0.26303 * 7 5 4 10 10 C 1.36000 * 125.98817 * 180.02562 * 9 7 5 11 11 H 1.08000 * 119.99781 * 320.95206 * 10 9 7 12 12 C 1.39697 * 119.99964 * 140.95014 * 10 9 7 13 13 N 1.30951 * 120.00034 * 151.82407 * 12 10 9 14 14 Si 1.86799 * 119.99995 * 331.83106 * 12 10 9 15 15 H 1.48499 * 109.47065 * 96.29189 * 14 12 10 16 16 H 1.48502 * 109.46902 * 216.28942 * 14 12 10 17 17 H 1.48500 * 109.47206 * 336.29077 * 14 12 10 18 18 C 1.46760 * 108.02458 * 0.02562 * 9 7 5 19 19 H 1.09001 * 110.11638 * 240.83200 * 18 9 7 20 20 C 1.50694 * 110.12016 * 119.23197 * 18 9 7 21 21 C 1.38239 * 119.99318 * 314.37308 * 20 18 9 22 22 C 1.38204 * 120.02377 * 179.97438 * 21 20 18 23 23 C 1.38374 * 120.01749 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01115 * 179.97438 * 23 22 21 25 25 C 1.38314 * 119.98572 * 0.02562 * 23 22 21 26 26 C 1.38346 * 119.99186 * 134.10049 * 20 18 9 27 27 Cl 1.73595 * 120.00459 * 0.02562 * 26 20 18 28 28 H 1.08999 * 109.46832 * 265.54702 * 1 2 3 29 29 H 1.09001 * 109.47067 * 25.54511 * 1 2 3 30 30 H 1.09002 * 109.47281 * 145.54602 * 1 2 3 31 31 H 0.96704 * 113.99563 * 179.72115 * 6 5 4 32 32 H 0.96996 * 120.00193 * 180.02562 * 13 12 10 33 33 H 1.08000 * 119.98789 * 0.02562 * 21 20 18 34 34 H 1.08007 * 119.99281 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.01486 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0517 0.0000 4 6 2.2118 -1.2209 -0.0005 5 6 3.5573 -1.3835 0.1294 6 8 4.4568 -0.3850 0.2825 7 6 3.8764 -2.8207 0.0829 8 8 4.9948 -3.2896 0.1771 9 7 2.7508 -3.5390 -0.0789 10 6 2.6727 -4.8941 -0.1630 11 1 3.4259 -5.4457 -0.7061 12 6 1.6183 -5.5726 0.4530 13 7 1.2032 -6.7160 -0.0320 14 14 0.8004 -4.8488 1.9684 15 1 -0.4190 -4.1037 1.5645 16 1 0.4259 -5.9436 2.8993 17 1 1.7440 -3.9238 2.6461 18 6 1.6216 -2.6041 -0.1486 19 1 0.9232 -2.7985 0.6655 20 6 0.9200 -2.7367 -1.4756 21 6 1.6567 -2.7951 -2.6439 22 6 1.0139 -2.9172 -3.8613 23 6 -0.3675 -2.9806 -3.9115 24 17 -1.1747 -3.1333 -5.4408 25 6 -1.1051 -2.9212 -2.7430 26 6 -0.4609 -2.8056 -1.5240 27 17 -1.3854 -2.7387 -0.0562 28 1 -0.3633 -0.0798 1.0246 29 1 -0.3633 0.9272 -0.4432 30 1 -0.3634 -0.8474 -0.5814 31 1 5.3714 -0.6886 0.3636 32 1 0.4709 -7.1869 0.3954 33 1 2.7348 -2.7461 -2.6053 34 1 1.5900 -2.9632 -4.7738 35 1 -2.1833 -2.9702 -2.7816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018189892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -50.314283 kcal Electronic energy + Delta-G solvation = -27897.025388 eV Core-core repulsion = 23720.877914 eV Total energy + Delta-G solvation = -4176.147474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 355.021 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19740 -39.17706 -38.52071 -37.34835 -36.77384 -36.28675 -35.69939 -33.49736 -31.67239 -30.92072 -30.77862 -29.58161 -26.17779 -25.63417 -23.17760 -22.75269 -21.63357 -20.43969 -18.77593 -18.06787 -17.52184 -17.26652 -16.47504 -15.82022 -15.44287 -15.26978 -14.94558 -14.86304 -14.47819 -14.23116 -14.04297 -13.89029 -13.61897 -13.48375 -13.22494 -12.95067 -12.80063 -12.54181 -12.43924 -11.92649 -11.86675 -11.67287 -11.58678 -11.38574 -11.09720 -10.95116 -10.77107 -10.42965 -10.34035 -9.65587 -9.40372 -8.94391 -8.87707 -8.53693 -8.38626 -8.28281 -6.95953 -4.41435 0.85840 1.02800 1.18793 1.83572 2.29130 2.82363 2.95066 3.03146 3.09015 3.39729 3.65720 3.78402 3.84909 4.03495 4.35470 4.65636 4.71094 4.80566 4.96012 5.01071 5.13101 5.22036 5.41821 5.47525 5.62596 5.68136 5.78544 5.94322 5.95141 6.14029 6.22517 6.37519 6.42782 6.62439 6.91411 7.47924 7.57822 7.94277 8.00972 8.40131 8.67774 9.28209 10.11174 Molecular weight = 355.02amu Principal moments of inertia in cm(-1) A = 0.008970 B = 0.006176 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.884183 B = 4532.930240 C = 5342.042824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.417 3.583 3 O -0.472 6.472 4 C -0.304 4.304 5 C 0.168 3.832 6 O -0.421 6.421 7 C 0.425 3.575 8 O -0.558 6.558 9 N -0.397 5.397 10 C -0.317 4.317 11 H 0.119 0.881 12 C 0.087 3.913 13 N -0.805 5.805 14 Si 0.832 3.168 15 H -0.234 1.234 16 H -0.274 1.274 17 H -0.258 1.258 18 C 0.187 3.813 19 H 0.106 0.894 20 C -0.042 4.042 21 C -0.057 4.057 22 C -0.101 4.101 23 C -0.024 4.024 24 Cl -0.067 7.067 25 C -0.102 4.102 26 C -0.019 4.019 27 Cl -0.048 7.048 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.406 0.594 32 H 0.286 0.714 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 6.900 -4.557 11.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C 0.300 3.700 3 O -0.352 6.352 4 C -0.310 4.310 5 C 0.112 3.888 6 O -0.220 6.220 7 C 0.216 3.784 8 O -0.443 6.443 9 N -0.115 5.115 10 C -0.442 4.442 11 H 0.136 0.864 12 C -0.129 4.129 13 N -0.435 5.435 14 Si 0.655 3.345 15 H -0.158 1.158 16 H -0.200 1.200 17 H -0.181 1.181 18 C 0.083 3.917 19 H 0.123 0.877 20 C -0.044 4.044 21 C -0.076 4.076 22 C -0.120 4.120 23 C -0.051 4.051 24 Cl -0.039 7.039 25 C -0.122 4.122 26 C -0.047 4.047 27 Cl -0.019 7.019 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.260 0.740 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.187 7.262 -4.556 11.186 hybrid contribution -0.225 -0.410 0.924 1.036 sum -7.411 6.851 -3.631 10.726 Atomic orbital electron populations 1.22586 0.94823 1.04939 1.04430 1.19833 0.91201 0.86684 0.72304 1.90576 1.72062 1.33685 1.38846 1.20766 0.92183 0.95799 1.22262 1.21974 0.90188 0.89281 0.87393 1.84887 1.20947 1.30892 1.85314 1.18859 0.86919 0.85764 0.86886 1.90726 1.21875 1.75219 1.56526 1.43419 1.04493 1.05493 1.58048 1.18922 1.13477 0.77190 1.34652 0.86413 1.25448 0.95423 0.95151 0.96840 1.69589 1.22810 1.15233 1.35902 0.87504 0.81877 0.80996 0.84086 1.15837 1.19989 1.18146 1.19386 0.91172 0.86416 0.94692 0.87659 1.19503 0.91069 0.98333 0.95502 1.20809 1.00607 0.96031 0.90123 1.21080 0.92164 0.99774 0.98976 1.20648 0.92653 1.05259 0.86556 1.98362 1.79749 1.96319 1.29419 1.20734 1.00661 1.01699 0.89077 1.20522 0.91215 1.05122 0.87794 1.98390 1.73511 1.96156 1.33856 0.89114 0.90032 0.89444 0.73961 0.90315 0.84421 0.84272 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.98 9.44 36.01 0.34 -2.64 16 2 C 0.42 7.41 6.99 -33.27 -0.23 7.18 16 3 O -0.47 -9.52 16.86 -8.64 -0.15 -9.67 16 4 C -0.30 -5.72 5.36 -104.13 -0.56 -6.27 16 5 C 0.17 3.25 7.38 -36.65 -0.27 2.98 16 6 O -0.42 -7.18 12.72 -33.30 -0.42 -7.60 16 7 C 0.42 9.44 7.89 -12.70 -0.10 9.34 16 8 O -0.56 -13.76 17.60 5.24 0.09 -13.67 16 9 N -0.40 -8.87 1.75 -111.18 -0.19 -9.06 16 10 C -0.32 -7.84 9.73 -15.16 -0.15 -7.99 16 11 H 0.12 3.21 8.06 -52.49 -0.42 2.79 16 12 C 0.09 2.09 5.37 -17.38 -0.09 2.00 16 13 N -0.81 -19.94 13.93 55.53 0.77 -19.16 16 14 Si 0.83 17.58 25.50 -169.99 -4.33 13.24 16 15 H -0.23 -4.34 4.21 56.52 0.24 -4.11 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 18 C 0.19 3.63 1.86 -69.89 -0.13 3.50 16 19 H 0.11 2.06 2.92 -51.93 -0.15 1.91 16 20 C -0.04 -0.74 4.06 -104.58 -0.42 -1.17 16 21 C -0.06 -0.94 9.26 -39.59 -0.37 -1.31 16 22 C -0.10 -1.43 9.83 -39.54 -0.39 -1.82 16 23 C -0.02 -0.33 6.32 -39.50 -0.25 -0.58 16 24 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.30 16 25 C -0.10 -1.42 9.62 -39.51 -0.38 -1.80 16 26 C -0.02 -0.30 4.86 -39.50 -0.19 -0.49 16 27 Cl -0.05 -0.72 22.15 -51.86 -1.15 -1.87 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.23 2.66 -51.93 -0.14 1.09 16 31 H 0.41 5.16 8.86 45.56 0.40 5.56 16 32 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 33 H 0.14 2.33 7.91 -52.49 -0.42 1.92 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -28.99 326.94 -6.86 -35.85 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -1.71 Total: 8.39 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.19 Total: 0.93 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: 0.58 Total: -28.23 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.48 Total: -30.94 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.33 Total: 13.24 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -2.65 Total: -4.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.99 -6.86 -35.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018189892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.467 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds