Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47068 * 2 1 4 4 C 1.36767 * 119.99894 * 95.65182 * 3 2 1 5 5 H 1.08000 * 119.99694 * 219.59662 * 4 3 2 6 6 C 1.38826 * 120.00478 * 39.59748 * 4 3 2 7 7 N 1.31567 * 119.99855 * 19.72450 * 6 4 3 8 8 Si 1.86792 * 120.00293 * 199.72365 * 6 4 3 9 9 H 1.48498 * 109.47203 * 90.00002 * 8 6 4 10 10 H 1.48499 * 109.47222 * 209.99953 * 8 6 4 11 11 H 1.48504 * 109.47288 * 329.99693 * 8 6 4 12 12 C 1.38826 * 119.99652 * 275.64742 * 3 2 1 13 13 C 1.39366 * 119.92435 * 359.72682 * 12 3 2 14 14 C 1.36612 * 120.07549 * 179.75902 * 13 12 3 15 15 C 1.40014 * 119.91863 * 0.53747 * 14 13 12 16 16 C 1.47001 * 120.07181 * 179.73941 * 15 14 13 17 17 N 1.30411 * 120.00231 * 359.97438 * 16 15 14 18 18 C 1.36730 * 119.99758 * 175.45481 * 17 16 15 19 19 C 1.39678 * 120.12979 * 48.78682 * 18 17 16 20 20 C 1.37825 * 119.94695 * 179.78624 * 19 18 17 21 21 C 1.38960 * 120.21586 * 0.46828 * 20 19 18 22 22 O 1.35872 * 119.86885 * 179.76167 * 21 20 19 23 23 C 1.42895 * 117.00517 * 0.02562 * 22 21 20 24 24 C 1.38753 * 120.26184 * 359.78454 * 21 20 19 25 25 C 1.38357 * 120.04340 * 359.97438 * 24 21 20 26 26 O 1.35853 * 120.10425 * 179.97438 * 25 24 21 27 27 C 1.42893 * 117.00081 * 0.02562 * 26 25 24 28 28 C 1.40014 * 119.84796 * 359.71676 * 15 14 13 29 29 C 1.36603 * 119.92140 * 359.97438 * 28 15 14 30 30 H 1.08992 * 109.47037 * 60.00102 * 1 2 3 31 31 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46955 * 300.00003 * 1 2 3 33 33 H 1.09006 * 109.47172 * 120.00063 * 2 1 3 34 34 H 1.09002 * 109.47421 * 239.99832 * 2 1 3 35 35 H 0.96990 * 119.99833 * 179.97438 * 7 6 4 36 36 H 1.07998 * 119.96175 * 0.02562 * 13 12 3 37 37 H 1.07995 * 120.03482 * 180.27304 * 14 13 12 38 38 H 1.08008 * 119.99700 * 179.97438 * 16 15 14 39 39 H 1.08003 * 120.02541 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.89252 * 180.20342 * 20 19 18 41 41 H 1.09007 * 109.46758 * 300.00138 * 23 22 21 42 42 H 1.08998 * 109.47089 * 59.98908 * 23 22 21 43 43 H 1.08997 * 109.47862 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.97464 * 180.02562 * 24 21 20 45 45 H 1.09000 * 109.47005 * 59.99295 * 27 26 25 46 46 H 1.08997 * 109.47724 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.46896 * 300.00091 * 27 26 25 48 48 H 1.08004 * 120.03932 * 180.02562 * 28 15 14 49 49 H 1.08003 * 119.95949 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3562 1.9871 1.1787 5 1 2.1049 3.0243 1.3441 6 6 3.0223 1.2688 2.1624 7 7 3.6664 0.1653 1.8489 8 14 3.0040 1.8691 3.9312 9 1 1.8390 1.2825 4.6410 10 1 4.2579 1.4517 4.6086 11 1 2.9008 3.3504 3.9502 12 6 2.1381 2.0750 -1.1965 13 6 1.7988 1.4542 -2.3972 14 6 1.9108 2.1356 -3.5759 15 6 2.3778 3.4556 -3.5777 16 6 2.5051 4.1901 -4.8447 17 7 2.1834 3.6122 -5.9687 18 6 2.2129 4.3235 -7.1360 19 6 3.3321 5.0941 -7.4594 20 6 3.3596 5.8061 -8.6392 21 6 2.2730 5.7680 -9.5045 22 8 2.3057 6.4765 -10.6634 23 6 3.4872 7.2359 -10.9265 24 6 1.1545 5.0097 -9.1895 25 6 1.1174 4.2868 -8.0104 26 8 0.0227 3.5443 -7.7005 27 6 -1.0551 3.5548 -8.6386 28 6 2.7228 4.0744 -2.3701 29 6 2.6024 3.3892 -1.1945 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 4.1321 -0.3363 2.5362 36 1 1.4428 0.4345 -2.3954 37 1 1.6435 1.6553 -4.5055 38 1 2.8651 5.2084 -4.8447 39 1 4.1765 5.1294 -6.7870 40 1 4.2268 6.3990 -8.8900 41 1 3.6334 7.9675 -10.1317 42 1 4.3472 6.5675 -10.9674 43 1 3.3827 7.7518 -11.8809 44 1 0.3128 4.9831 -9.8656 45 1 -0.7052 3.1744 -9.5983 46 1 -1.8634 2.9230 -8.2706 47 1 -1.4186 4.5749 -8.7629 48 1 3.0830 5.0926 -2.3679 49 1 2.8687 3.8658 -0.2627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018191826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = 13.687129 kcal Electronic energy + Delta-G solvation = -29791.710248 eV Core-core repulsion = 25685.279714 eV Total energy + Delta-G solvation = -4106.430534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.56295 -39.03803 -38.78082 -37.38540 -36.13800 -34.62713 -32.33819 -30.98661 -30.52725 -30.04314 -29.46147 -28.07940 -27.38147 -26.69588 -25.07586 -23.59138 -22.42135 -21.87614 -21.61366 -20.28905 -19.34965 -18.78893 -17.41080 -16.92300 -16.49997 -16.38110 -16.14702 -16.03776 -15.59113 -15.03161 -14.96169 -14.73406 -14.24643 -14.12324 -13.69392 -13.49589 -13.27545 -13.04349 -12.78604 -12.69177 -12.62375 -12.50367 -12.22904 -12.02715 -11.91614 -11.71309 -11.63627 -11.33866 -11.29114 -11.15872 -11.00943 -10.78748 -10.66593 -10.52479 -10.33811 -10.15947 -9.79289 -9.30941 -9.11216 -8.67958 -8.44816 -8.06456 -7.50152 -6.71041 -6.21523 -4.05922 0.99857 1.30038 1.98648 2.59973 2.99121 3.02104 3.12229 3.14414 3.26097 3.33049 3.77213 3.95147 4.62599 4.67345 4.67821 4.81290 4.88505 4.88830 4.91852 4.95843 5.06489 5.07544 5.17697 5.29715 5.30327 5.41442 5.46334 5.50735 5.77103 5.88555 5.94933 5.99953 6.15804 6.17673 6.19133 6.24016 6.32083 6.41329 6.52267 6.64639 6.71880 6.77650 6.82666 7.10713 7.14481 7.15045 7.26556 7.35505 7.42940 7.54162 7.60154 7.82841 8.09793 8.51641 8.54545 9.10720 9.49022 10.45169 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.001876 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.479711 B =14924.958402 C =15910.279048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.419 5.419 4 C -0.321 4.321 5 H 0.092 0.908 6 C 0.039 3.961 7 N -0.855 5.855 8 Si 0.921 3.079 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.238 3.762 13 C -0.250 4.250 14 C -0.001 4.001 15 C -0.221 4.221 16 C 0.240 3.760 17 N -0.519 5.519 18 C 0.055 3.945 19 C -0.093 4.093 20 C -0.224 4.224 21 C 0.139 3.861 22 O -0.320 6.320 23 C 0.029 3.971 24 C -0.230 4.230 25 C 0.164 3.836 26 O -0.291 6.291 27 C 0.024 3.976 28 C -0.028 4.028 29 C -0.215 4.215 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.054 0.946 46 H 0.100 0.900 47 H 0.053 0.947 48 H 0.106 0.894 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 8.939 -17.265 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.101 5.101 4 C -0.449 4.449 5 H 0.110 0.890 6 C -0.168 4.168 7 N -0.489 5.489 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.117 3.883 13 C -0.273 4.273 14 C -0.022 4.022 15 C -0.227 4.227 16 C 0.044 3.956 17 N -0.227 5.227 18 C -0.047 4.047 19 C -0.114 4.114 20 C -0.244 4.244 21 C 0.094 3.906 22 O -0.233 6.233 23 C -0.067 4.067 24 C -0.250 4.250 25 C 0.117 3.883 26 O -0.202 6.202 27 C -0.071 4.071 28 C -0.050 4.050 29 C -0.238 4.238 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.154 0.846 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.072 0.928 48 H 0.124 0.876 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.556 7.688 -17.253 19.220 hybrid contribution 0.643 1.129 0.618 1.438 sum -2.914 8.817 -16.635 19.052 Atomic orbital electron populations 1.22187 0.97861 1.00481 1.01830 1.21510 0.91906 0.84729 1.03565 1.42603 1.53876 1.10864 1.02761 1.19441 1.35959 0.98301 0.91211 0.89005 1.25501 0.93857 0.96567 1.00845 1.70008 1.27911 1.16705 1.34265 0.86016 0.77868 0.79553 0.81878 1.20113 1.20781 1.19119 1.18459 0.91434 0.92288 0.86131 1.20213 1.14999 1.00489 0.91644 1.20600 0.92247 0.92618 0.96764 1.17980 1.18077 0.96333 0.90301 1.24252 0.86711 0.94049 0.90566 1.68513 1.23933 1.32995 0.97223 1.18190 0.92969 0.97706 0.95881 1.21327 0.98047 0.94962 0.97015 1.20936 0.99298 1.06978 0.97183 1.18603 0.93859 0.92436 0.85727 1.86012 1.40530 1.59886 1.36892 1.23033 0.86681 0.94887 1.02052 1.20198 1.00162 1.05392 0.99206 1.18545 0.86734 0.91232 0.91836 1.86255 1.23967 1.64146 1.45872 1.23092 0.88769 1.02159 0.93114 1.20528 0.95249 0.97655 0.91557 1.20187 1.10966 0.94688 0.97983 0.93143 0.93087 0.92655 0.88010 0.92764 0.91766 0.87277 0.86616 0.89730 0.85171 0.85531 0.92618 0.92631 0.88410 0.84614 0.92764 0.88171 0.92829 0.87579 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 10.10 37.16 0.38 -2.63 16 2 C 0.11 2.28 5.28 -4.04 -0.02 2.26 16 3 N -0.42 -9.80 2.61 -113.11 -0.30 -10.09 16 4 C -0.32 -7.83 8.37 -15.13 -0.13 -7.95 16 5 H 0.09 2.20 6.92 -52.49 -0.36 1.84 16 6 C 0.04 0.95 4.92 -17.45 -0.09 0.87 16 7 N -0.86 -21.69 11.60 55.49 0.64 -21.05 16 8 Si 0.92 18.81 29.60 -169.99 -5.03 13.78 16 9 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 C 0.24 5.31 6.49 -83.85 -0.54 4.76 16 13 C -0.25 -5.16 8.71 -39.75 -0.35 -5.51 16 14 C 0.00 -0.02 9.53 -39.50 -0.38 -0.40 16 15 C -0.22 -4.12 5.87 -105.02 -0.62 -4.74 16 16 C 0.24 4.02 9.92 -14.61 -0.14 3.88 16 17 N -0.52 -9.24 9.26 -8.95 -0.08 -9.32 16 18 C 0.05 0.88 6.14 -84.40 -0.52 0.36 16 19 C -0.09 -1.26 9.21 -39.19 -0.36 -1.62 16 20 C -0.22 -2.66 9.01 -39.47 -0.36 -3.02 16 21 C 0.14 1.73 6.69 -39.12 -0.26 1.47 16 22 O -0.32 -3.51 10.49 -19.34 -0.20 -3.72 16 23 C 0.03 0.20 9.81 101.05 0.99 1.19 16 24 C -0.23 -2.98 8.96 -39.35 -0.35 -3.33 16 25 C 0.16 2.48 6.73 -38.80 -0.26 2.22 16 26 O -0.29 -4.36 10.24 -19.28 -0.20 -4.56 16 27 C 0.02 0.23 9.81 101.05 0.99 1.22 16 28 C -0.03 -0.52 9.74 -39.51 -0.38 -0.90 16 29 C -0.21 -4.50 9.20 -39.75 -0.37 -4.87 16 30 H 0.05 0.90 7.59 -51.93 -0.39 0.51 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 2.37 5.69 -51.93 -0.30 2.08 16 34 H 0.05 1.13 6.48 -51.93 -0.34 0.79 16 35 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 36 H 0.11 2.15 6.03 -52.49 -0.32 1.83 16 37 H 0.12 2.23 7.54 -52.49 -0.40 1.84 16 38 H 0.09 1.21 7.59 -52.48 -0.40 0.81 16 39 H 0.13 1.59 7.80 -52.48 -0.41 1.18 16 40 H 0.13 1.16 6.27 -52.49 -0.33 0.83 16 41 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 42 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.14 1.48 6.29 -52.49 -0.33 1.15 16 45 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 48 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 49 H 0.12 2.54 6.46 -52.48 -0.34 2.20 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -28.76 403.85 -8.59 -37.35 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.75 Total: 8.25 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.77 Total: -16.73 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.27 Total: -40.46 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.40 Total: -8.27 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.76 -8.59 -37.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018191826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.034 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds