Wall clock time and date at job start Tue Mar 31 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86797 * 120.00201 * 2 1 4 4 H 1.48497 * 109.47010 * 270.00167 * 3 2 1 5 5 H 1.48497 * 109.47201 * 29.99944 * 3 2 1 6 6 H 1.48500 * 109.47223 * 149.99801 * 3 2 1 7 7 C 1.38625 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00132 * 179.97438 * 7 2 1 9 9 O 1.34808 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.35800 * 116.99888 * 185.05993 * 9 7 2 11 11 C 1.38902 * 119.99665 * 174.63162 * 10 9 7 12 12 C 1.38005 * 120.00784 * 180.23236 * 11 10 9 13 13 C 1.38950 * 119.99226 * 359.49656 * 12 11 10 14 14 N 1.39786 * 120.00467 * 180.27739 * 13 12 11 15 15 S 1.65600 * 120.00124 * 133.82313 * 14 13 12 16 16 O 1.42101 * 106.40409 * 52.16098 * 15 14 13 17 17 O 1.42102 * 106.39975 * 185.08336 * 15 14 13 18 18 C 1.76203 * 107.21742 * 298.62314 * 15 14 13 19 19 C 1.38212 * 119.97365 * 274.83193 * 18 15 14 20 20 C 1.38476 * 120.02559 * 179.76843 * 19 18 15 21 21 F 1.35094 * 120.01536 * 180.27439 * 20 19 18 22 22 C 1.38419 * 119.97042 * 0.52821 * 20 19 18 23 23 C 1.38419 * 119.95386 * 359.72430 * 22 20 19 24 24 F 1.35103 * 120.01480 * 179.97438 * 23 22 20 25 25 C 1.38206 * 119.97665 * 95.10927 * 18 15 14 26 26 C 1.38946 * 119.98881 * 0.24807 * 13 12 11 27 27 C 1.38012 * 119.99285 * 0.02562 * 26 13 12 28 28 H 0.96997 * 120.00061 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99497 * 0.02562 * 11 10 9 30 30 H 1.08006 * 120.00619 * 179.76839 * 12 11 10 31 31 H 0.97003 * 119.99631 * 313.82209 * 14 13 12 32 32 H 1.08003 * 119.98723 * 0.02562 * 19 18 15 33 33 H 1.08001 * 120.02192 * 179.74418 * 22 20 19 34 34 H 1.08005 * 119.98567 * 359.97278 * 25 18 15 35 35 H 1.08000 * 120.00127 * 180.02562 * 26 13 12 36 36 H 1.08000 * 119.99234 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3347 -2.3680 0.0005 10 6 2.0702 -3.5046 0.1078 11 6 1.4350 -4.7341 0.2266 12 6 2.1822 -5.8888 0.3404 13 6 3.5700 -5.8224 0.3257 14 7 4.3270 -6.9924 0.4351 15 16 5.6041 -7.2510 -0.5869 16 8 6.4204 -6.0902 -0.5108 17 8 6.0843 -8.5586 -0.3061 18 6 4.9591 -7.2990 -2.2259 19 6 4.4531 -8.4804 -2.7344 20 6 3.9415 -8.5182 -4.0207 21 9 3.4418 -9.6717 -4.5155 22 6 3.9470 -7.3749 -4.8010 23 6 4.4588 -6.1936 -4.2925 24 9 4.4654 -5.0771 -5.0532 25 6 4.9648 -6.1568 -3.0040 26 6 4.2052 -4.5928 0.2015 27 6 3.4575 -3.4379 0.0934 28 1 -0.4850 0.8400 0.0004 29 1 0.3562 -4.7862 0.2332 30 1 1.6882 -6.8445 0.4365 31 1 4.1043 -7.6528 1.1098 32 1 4.4529 -9.3733 -2.1269 33 1 3.5520 -7.4045 -5.8057 34 1 5.3641 -5.2352 -2.6070 35 1 5.2839 -4.5410 0.1897 36 1 3.9512 -2.4822 -0.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018895482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:26 Heat of formation + Delta-G solvation = -127.284255 kcal Electronic energy + Delta-G solvation = -28584.541835 eV Core-core repulsion = 23991.136813 eV Total energy + Delta-G solvation = -4593.405022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.052 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -49.38745 -49.26176 -39.33402 -39.12108 -37.58065 -37.07204 -36.05709 -34.01943 -32.26589 -31.72471 -30.79514 -30.37718 -27.67958 -25.38134 -24.21680 -23.32714 -22.33855 -21.55884 -19.92940 -18.80208 -18.29409 -17.86671 -17.64291 -17.32867 -16.88835 -16.59084 -16.31665 -16.21056 -16.00768 -15.61419 -15.09564 -14.68309 -14.66325 -14.59061 -13.82137 -13.74891 -13.28911 -13.26295 -12.91138 -12.80354 -12.67593 -12.60754 -12.51539 -12.19694 -12.09039 -11.91708 -11.62519 -11.41268 -11.32630 -11.12794 -10.71795 -10.51374 -10.16065 -9.84164 -9.40128 -9.17722 -8.88534 -8.41975 -7.22575 -6.56783 -4.14360 -0.03189 0.26794 0.53304 2.00983 2.06478 2.57760 2.90127 3.07678 3.09301 3.13970 3.44741 3.52366 3.72436 3.88228 4.27548 4.32075 4.33846 4.46066 4.58870 4.85355 4.96174 5.12244 5.26217 5.35682 5.43663 5.47034 5.54418 5.55068 5.61933 6.03175 6.15595 6.27227 6.45838 6.63739 6.73870 7.00744 7.05089 7.17356 7.31063 7.63405 7.87498 8.88517 9.54779 10.60330 Molecular weight = 355.05amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.003262 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.900030 B = 8580.421913 C = 9404.781811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.152 3.848 11 C -0.180 4.180 12 C -0.074 4.074 13 C 0.021 3.979 14 N -1.036 6.036 15 S 2.691 3.309 16 O -0.941 6.941 17 O -0.958 6.958 18 C -0.618 4.618 19 C -0.065 4.065 20 C 0.110 3.890 21 F -0.127 7.127 22 C -0.140 4.140 23 C 0.117 3.883 24 F -0.121 7.121 25 C -0.054 4.054 26 C -0.094 4.094 27 C -0.216 4.216 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.420 0.580 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 -15.051 -5.224 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.113 0.887 9 O -0.072 6.072 10 C 0.096 3.904 11 C -0.200 4.200 12 C -0.095 4.095 13 C -0.074 4.074 14 N -0.790 5.790 15 S 2.779 3.221 16 O -0.931 6.931 17 O -0.948 6.948 18 C -0.702 4.702 19 C -0.085 4.085 20 C 0.090 3.910 21 F -0.105 7.105 22 C -0.159 4.159 23 C 0.097 3.903 24 F -0.100 7.100 25 C -0.074 4.074 26 C -0.115 4.115 27 C -0.236 4.236 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.257 0.743 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.402 -14.848 -5.224 17.843 hybrid contribution -0.443 0.527 -0.608 0.919 sum 7.960 -14.321 -5.832 17.392 Atomic orbital electron populations 1.70040 1.06031 1.27974 1.45103 1.25321 0.95866 0.98980 0.96238 0.85693 0.79024 0.79819 0.78865 1.19752 1.20179 1.18978 1.21388 0.91982 0.80661 1.52852 0.88717 1.83982 1.34486 1.11545 1.77185 1.19473 0.90352 0.88134 0.92409 1.20091 0.99718 0.89886 1.10313 1.20590 0.91866 0.97476 0.99611 1.16868 0.90355 0.84107 1.16112 1.52686 1.51541 1.28083 1.46674 1.02491 0.73277 0.73556 0.72730 1.93585 1.64426 1.49594 1.85506 1.93595 1.78165 1.39199 1.83813 1.30948 1.15333 0.98345 1.25555 1.20879 0.95044 0.98077 0.94510 1.17240 0.98961 0.82084 0.92757 1.91560 1.84951 1.46367 1.87627 1.21350 1.01263 0.91193 1.02136 1.17310 1.00353 0.82828 0.89835 1.91597 1.94188 1.49437 1.74751 1.21089 0.95368 0.98956 0.91996 1.21434 1.00827 0.90601 0.98672 1.21093 0.93493 0.98779 1.10273 0.91819 0.85940 0.86403 0.74266 0.82438 0.82583 0.81792 0.84018 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.08 13.67 55.48 0.76 -23.32 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.68 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.37 9.48 30.88 0.29 -10.08 16 8 H 0.10 2.30 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.53 9.76 -0.04 0.00 -4.53 16 10 C 0.15 3.36 6.65 -39.09 -0.26 3.10 16 11 C -0.18 -3.38 9.98 -39.42 -0.39 -3.77 16 12 C -0.07 -1.13 9.96 -39.40 -0.39 -1.52 16 13 C 0.02 0.31 6.14 -83.70 -0.51 -0.21 16 14 N -1.04 -12.07 5.77 32.45 0.19 -11.89 16 15 S 2.69 32.77 5.63 -107.50 -0.61 32.16 16 16 O -0.94 -13.68 14.30 -57.17 -0.82 -14.50 16 17 O -0.96 -12.72 17.41 -57.17 -1.00 -13.71 16 18 C -0.62 -7.17 5.83 -39.60 -0.23 -7.40 16 19 C -0.07 -0.68 9.50 -39.50 -0.38 -1.05 16 20 C 0.11 1.13 7.30 -39.43 -0.29 0.85 16 21 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 22 C -0.14 -1.41 10.01 -39.45 -0.39 -1.81 16 23 C 0.12 1.38 7.30 -39.43 -0.29 1.09 16 24 F -0.12 -1.54 17.27 2.25 0.04 -1.50 16 25 C -0.05 -0.66 9.51 -39.51 -0.38 -1.04 16 26 C -0.09 -1.61 9.22 -39.40 -0.36 -1.97 16 27 C -0.22 -4.32 9.16 -39.42 -0.36 -4.68 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.42 3.71 8.96 -34.47 -0.31 3.40 16 32 H 0.16 1.32 7.73 -52.48 -0.41 0.92 16 33 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.16 1.98 7.51 -52.48 -0.39 1.59 16 35 H 0.14 2.30 5.70 -52.49 -0.30 2.00 16 36 H 0.14 2.70 5.63 -52.49 -0.30 2.41 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -31.37 340.68 -7.70 -39.08 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.38 Total: 7.20 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -4.04 Total: -27.53 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.95 Total: -35.21 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.81 Total: -32.74 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.61 Total: 32.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.37 -7.70 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018895482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.208 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds