Wall clock time and date at job start Tue Mar 31 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30943 * 1 3 3 Si 1.86807 * 119.99947 * 2 1 4 4 H 1.48496 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46907 * 299.99613 * 3 2 1 6 6 H 1.48503 * 109.47018 * 59.99471 * 3 2 1 7 7 C 1.40021 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.39431 * 119.99781 * 0.02562 * 7 2 1 10 10 S 1.75409 * 124.83882 * 0.45229 * 9 7 2 11 11 C 1.76082 * 91.96130 * 179.97438 * 10 9 7 12 12 N 1.33064 * 129.75497 * 179.50841 * 11 10 9 13 13 C 1.32649 * 122.00456 * 180.02562 * 12 11 10 14 14 C 1.47284 * 119.61267 * 179.97438 * 13 12 11 15 15 C 1.36332 * 125.96186 * 359.73616 * 14 13 12 16 16 C 1.40684 * 106.73172 * 179.88406 * 15 14 13 17 17 C 1.34929 * 107.07161 * 0.38054 * 16 15 14 18 18 O 1.34232 * 108.72264 * 359.76215 * 17 16 15 19 19 C 1.40193 * 120.77781 * 0.02562 * 13 12 11 20 20 C 1.36118 * 119.52050 * 359.97438 * 19 13 12 21 21 C 1.50703 * 120.46827 * 179.97438 * 20 19 13 22 22 F 1.39905 * 109.47157 * 0.02562 * 21 20 19 23 23 F 1.39900 * 109.47159 * 240.00430 * 21 20 19 24 24 F 1.39897 * 109.47274 * 120.00121 * 21 20 19 25 25 C 1.40418 * 110.00572 * 359.74204 * 11 10 9 26 26 C 1.38007 * 124.83939 * 179.97438 * 9 7 2 27 27 N 1.38790 * 122.66430 * 359.97438 * 26 9 7 28 28 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 29 29 H 1.08002 * 126.63454 * 0.02562 * 15 14 13 30 30 H 1.07994 * 126.46325 * 180.17370 * 16 15 14 31 31 H 1.08001 * 125.63778 * 179.76764 * 17 16 15 32 32 H 1.07993 * 120.23505 * 179.97438 * 19 13 12 33 33 H 0.97007 * 120.00029 * 180.02562 * 27 26 9 34 34 H 0.96996 * 120.00656 * 0.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 3.7034 1.3465 0.0006 5 1 1.8847 2.3964 -1.2125 6 1 1.8846 2.3966 1.2125 7 6 2.0096 -1.2126 0.0005 8 1 3.0895 -1.2125 0.0010 9 6 1.3124 -2.4201 0.0005 10 16 -0.4354 -2.5681 -0.0115 11 6 -0.3470 -4.3267 -0.0043 12 7 -1.3260 -5.2279 0.0008 13 6 -1.0814 -6.5316 0.0064 14 6 -2.2057 -7.4830 0.0125 15 6 -3.5296 -7.1578 0.0181 16 6 -4.2443 -8.3696 0.0198 17 6 -3.3346 -9.3660 0.0238 18 8 -2.1052 -8.8271 0.0193 19 6 0.2347 -7.0145 0.0077 20 6 1.2724 -6.1336 0.0026 21 6 2.6956 -6.6293 0.0045 22 9 2.7021 -8.0284 0.0111 23 9 3.3535 -6.1541 1.1440 24 9 3.3523 -6.1658 -1.1405 25 6 0.9949 -4.7402 0.0010 26 6 1.8991 -3.6692 0.0005 27 7 3.2752 -3.8505 0.0000 28 1 -0.4850 0.8400 -0.0004 29 1 -3.9488 -6.1624 0.0185 30 1 -5.3185 -8.4812 0.0214 31 1 -3.5585 -10.4226 0.0296 32 1 0.4238 -8.0778 0.0127 33 1 3.6463 -4.7467 -0.0003 34 1 3.8658 -3.0811 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019074868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:16 Heat of formation + Delta-G solvation = -88.447762 kcal Electronic energy + Delta-G solvation = -28626.474222 eV Core-core repulsion = 24009.011634 eV Total energy + Delta-G solvation = -4617.462588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.039 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91178 -47.36983 -47.18018 -42.06062 -39.18314 -36.34233 -34.35862 -32.74897 -32.09019 -31.39614 -29.84857 -28.45282 -26.44677 -24.79407 -23.23027 -22.25378 -21.01528 -20.37245 -19.67647 -18.72464 -18.16398 -18.04684 -17.88351 -16.58559 -16.42840 -15.90088 -15.64610 -15.26927 -14.98673 -14.43146 -14.29905 -14.15308 -13.89408 -13.68226 -13.67797 -13.45999 -13.38118 -13.13139 -12.72171 -12.58748 -12.40697 -12.28774 -12.11109 -12.07978 -11.51696 -11.45385 -11.37637 -10.92088 -10.66354 -10.15900 -9.76418 -9.65655 -9.56651 -8.96742 -8.71036 -8.20428 -7.57408 -7.42050 -6.50372 -4.55691 1.10849 1.76123 2.23508 2.61226 2.61587 2.66309 2.74359 2.99493 3.13555 3.27527 3.29467 3.45814 3.48645 4.29624 4.32903 4.52692 4.59437 5.00895 5.03268 5.27745 5.35982 5.47065 5.53474 5.87221 5.98605 6.14325 6.22013 6.28925 6.36250 6.46636 6.58953 6.69020 6.92876 6.97271 7.27894 7.35719 7.50439 7.61929 7.80930 8.69967 8.76836 8.94416 9.21286 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.004090 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.580990 B = 6845.127204 C = 9031.175671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.107 0.893 9 C -0.004 4.004 10 S 0.235 5.765 11 C -0.055 4.055 12 N -0.380 5.380 13 C 0.061 3.939 14 C 0.078 3.922 15 C -0.200 4.200 16 C -0.208 4.208 17 C -0.064 4.064 18 O -0.177 6.177 19 C -0.062 4.062 20 C -0.207 4.207 21 C 0.512 3.488 22 F -0.184 7.184 23 F -0.173 7.173 24 F -0.173 7.173 25 C -0.047 4.047 26 C 0.000 4.000 27 N -0.885 5.885 28 H 0.311 0.689 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.198 0.802 32 H 0.129 0.871 33 H 0.377 0.623 34 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -3.992 0.008 3.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.359 4.359 8 H 0.125 0.875 9 C -0.128 4.128 10 S 0.493 5.507 11 C -0.310 4.310 12 N -0.090 5.090 13 C -0.079 4.079 14 C 0.027 3.973 15 C -0.221 4.221 16 C -0.228 4.228 17 C -0.132 4.132 18 O -0.072 6.072 19 C -0.085 4.085 20 C -0.215 4.215 21 C 0.458 3.542 22 F -0.166 7.166 23 F -0.155 7.155 24 F -0.155 7.155 25 C -0.064 4.064 26 C -0.102 4.102 27 N -0.439 5.439 28 H 0.125 0.875 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.215 0.785 32 H 0.146 0.854 33 H 0.212 0.788 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.924 -2.764 -0.003 3.367 hybrid contribution 2.674 -0.942 0.019 2.835 sum 0.750 -3.706 0.016 3.781 Atomic orbital electron populations 1.68551 1.07922 1.32148 1.29101 1.26471 0.95306 1.03571 0.92821 0.85549 0.80417 0.77670 0.79530 1.17587 1.18809 1.18814 1.19354 0.96204 0.88430 1.31893 0.87493 1.21370 0.96641 0.94689 1.00085 1.85133 1.01024 0.87467 1.77072 1.24422 0.89794 1.02727 1.14044 1.66573 1.35759 1.00137 1.06557 1.17153 0.87482 0.88047 1.15178 1.19843 0.93698 0.79517 1.04235 1.21701 0.91732 0.99470 1.09180 1.21707 1.00225 0.92587 1.08246 1.23911 0.81065 0.98998 1.09223 1.83998 1.31584 1.19737 1.71917 1.20928 0.92283 0.99210 0.96073 1.19088 0.89760 0.93981 1.18706 1.18347 0.88068 0.74288 0.73473 1.93110 1.96981 1.30165 1.96312 1.93093 1.83202 1.87476 1.51689 1.93096 1.83251 1.87884 1.51256 1.17711 0.94026 0.90689 1.03990 1.16094 0.85019 0.90259 1.18844 1.41869 1.02276 1.09367 1.90391 0.87528 0.83192 0.83855 0.78527 0.85359 0.78778 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -15.04 10.57 55.56 0.59 -14.45 16 2 C 0.04 0.82 5.50 -17.26 -0.09 0.72 16 3 Si 0.95 14.33 29.56 -169.99 -5.03 9.31 16 4 H -0.25 -3.78 7.11 56.52 0.40 -3.38 16 5 H -0.26 -3.98 7.11 56.52 0.40 -3.58 16 6 H -0.26 -3.98 7.11 56.52 0.40 -3.58 16 7 C -0.32 -6.75 8.99 -38.47 -0.35 -7.10 16 8 H 0.11 2.04 6.72 -52.49 -0.35 1.69 16 9 C 0.00 -0.08 6.13 -39.22 -0.24 -0.32 16 10 S 0.23 5.29 20.09 -107.50 -2.16 3.13 16 11 C -0.05 -1.30 7.62 -16.20 -0.12 -1.43 16 12 N -0.38 -8.84 10.05 -8.31 -0.08 -8.92 16 13 C 0.06 1.34 6.75 -83.10 -0.56 0.78 16 14 C 0.08 1.52 7.03 -36.59 -0.26 1.26 16 15 C -0.20 -3.56 10.58 -39.35 -0.42 -3.97 16 16 C -0.21 -3.00 10.88 -39.83 -0.43 -3.44 16 17 C -0.06 -0.88 12.08 29.56 0.36 -0.52 16 18 O -0.18 -3.07 10.37 4.57 0.05 -3.02 16 19 C -0.06 -1.30 9.06 -39.61 -0.36 -1.66 16 20 C -0.21 -4.50 5.41 -103.91 -0.56 -5.06 16 21 C 0.51 9.92 2.78 36.01 0.10 10.02 16 22 F -0.18 -3.27 16.00 2.25 0.04 -3.24 16 23 F -0.17 -3.32 14.93 2.25 0.03 -3.29 16 24 F -0.17 -3.32 14.97 2.25 0.03 -3.29 16 25 C -0.05 -1.11 5.77 -106.88 -0.62 -1.73 16 26 C 0.00 0.01 6.78 -84.07 -0.57 -0.56 16 27 N -0.88 -17.89 8.32 32.31 0.27 -17.62 16 28 H 0.31 5.45 8.30 -40.82 -0.34 5.12 16 29 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 30 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.20 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.13 2.40 7.00 -52.49 -0.37 2.04 16 33 H 0.38 7.35 2.96 -40.82 -0.12 7.23 16 34 H 0.38 7.00 7.50 -40.82 -0.31 6.69 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -25.47 318.21 -7.14 -32.61 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -1.55 Total: 17.00 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -4.12 Total: -13.01 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.77 Total: -40.99 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.05 Total: -3.02 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 0.10 Total: -9.81 kcal Atomic # 14 Polarization: 14.33 SS G_CDS: -5.03 Total: 9.31 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -2.16 Total: 3.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.47 -7.14 -32.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019074868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.834 kcal (2) G-P(sol) polarization free energy of solvation -25.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds