Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.37989 * 120.00607 * 179.97438 * 2 1 3 5 5 N 1.32861 * 120.03918 * 0.02562 * 4 2 1 6 6 C 1.32859 * 119.82329 * 180.02562 * 5 4 2 7 7 N 1.37997 * 120.04181 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00121 * 359.97438 * 7 6 5 9 9 C 1.46500 * 119.99894 * 179.97438 * 7 6 5 10 10 N 1.33111 * 119.91205 * 359.97438 * 6 5 4 11 11 C 1.32147 * 120.08539 * 0.02562 * 10 6 5 12 12 C 1.50708 * 119.90686 * 180.02562 * 11 10 6 13 13 C 1.53000 * 109.46688 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46940 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00215 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00400 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99751 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00504 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47455 * 59.99601 * 18 16 14 20 20 H 1.48494 * 109.47471 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47133 * 300.00100 * 18 16 14 22 22 N 1.46496 * 109.47021 * 300.00129 * 12 11 10 23 23 O 1.21798 * 119.99737 * 120.00450 * 22 12 11 24 24 O 1.21802 * 120.00038 * 299.99753 * 22 12 11 25 25 N 1.46500 * 109.47013 * 60.00181 * 12 11 10 26 26 O 1.21806 * 119.99770 * 174.99375 * 25 12 11 27 27 O 1.21801 * 120.00351 * 354.99747 * 25 12 11 28 28 N 1.32150 * 120.18030 * 359.71858 * 11 10 6 29 29 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 31 31 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 32 32 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 33 33 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 34 34 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 35 35 H 1.08998 * 109.46782 * 0.02562 * 8 7 6 36 36 H 1.08998 * 109.47237 * 120.00053 * 8 7 6 37 37 H 1.08996 * 109.47415 * 240.00555 * 8 7 6 38 38 H 1.09000 * 109.47302 * 89.99689 * 9 7 6 39 39 H 1.09001 * 109.46867 * 209.99659 * 9 7 6 40 40 H 1.08999 * 109.46774 * 329.99777 * 9 7 6 41 41 H 1.09002 * 109.47172 * 299.99481 * 13 12 11 42 42 H 1.08997 * 109.47554 * 60.00234 * 13 12 11 43 43 H 0.96999 * 120.00236 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1551 -1.1949 0.0005 5 7 1.4917 -2.3461 0.0005 6 6 2.1604 -3.4941 0.0016 7 7 1.4759 -4.6923 0.0010 8 6 0.0109 -4.6991 -0.0001 9 6 2.2143 -5.9577 0.0016 10 7 3.4915 -3.4869 0.0021 11 6 4.1477 -2.3399 0.0021 12 6 5.6548 -2.3364 0.0021 13 6 6.1614 -0.8927 0.0027 14 6 7.6684 -0.8892 0.0021 15 1 8.2106 -1.8233 0.0017 16 6 8.3550 0.3064 0.0020 17 7 7.6949 1.4438 0.0029 18 14 10.2230 0.3108 0.0019 19 1 10.7197 -0.3882 -1.2105 20 1 10.7148 1.7120 0.0024 21 1 10.7197 -0.3880 1.2145 22 7 6.1447 -3.0259 1.1982 23 8 6.8473 -4.0145 1.0864 24 8 5.8495 -2.6105 2.3045 25 7 6.1447 -3.0259 -1.1941 26 8 7.3385 -3.0554 -1.4341 27 8 5.3583 -3.5696 -1.9488 28 7 3.4861 -1.1959 -0.0040 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 2.3791 1.5835 1.0277 33 1 3.1499 1.1384 -0.5139 34 1 1.6083 2.0284 -0.5138 35 1 -0.3571 -3.6731 -0.0008 36 1 -0.3494 -5.2146 -0.8903 37 1 -0.3508 -5.2145 0.8896 38 1 2.3967 -6.2715 1.0294 39 1 1.6291 -6.7200 -0.5126 40 1 3.1664 -5.8229 -0.5115 41 1 5.7969 -0.3794 -0.8871 42 1 5.7969 -0.3801 0.8929 43 1 8.1779 2.2850 0.0032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019319966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = 118.145842 kcal Electronic energy + Delta-G solvation = -34330.203524 eV Core-core repulsion = 29648.487142 eV Total energy + Delta-G solvation = -4681.716382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.148 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.86247 -41.55720 -41.22955 -37.90630 -37.11212 -36.22831 -36.10476 -35.06799 -33.26952 -32.72670 -32.05167 -28.52006 -28.40791 -27.89470 -26.61101 -26.14646 -25.91059 -24.41970 -23.12936 -21.60178 -21.21964 -19.75109 -19.08992 -18.87138 -18.23034 -17.88630 -17.16924 -16.95784 -16.56902 -16.33781 -16.20642 -15.58792 -15.26874 -14.92476 -14.58329 -14.48991 -14.21031 -14.12698 -13.15801 -12.74724 -12.74329 -12.60445 -12.48174 -12.43404 -12.31372 -12.24290 -12.04395 -11.50362 -11.45526 -11.37892 -11.28449 -10.99942 -10.92126 -10.88315 -10.73616 -10.60715 -10.51516 -10.05823 -9.73967 -9.60934 -9.46457 -8.70908 -8.54447 -8.38941 -6.37150 -4.45270 0.40523 0.71425 0.82516 1.27263 1.48647 2.11515 2.23898 2.59217 2.96649 3.28663 3.29383 3.36840 3.86176 4.01718 4.15545 4.26751 4.66048 4.80491 4.94887 5.02699 5.07926 5.13076 5.15871 5.22738 5.33932 5.43554 5.52536 5.55849 5.58639 5.76503 5.93099 6.14601 6.17279 6.38718 6.47767 6.58086 6.71881 6.81405 6.93764 7.00514 7.21147 7.51657 7.65980 7.86731 8.03779 8.29306 8.59206 9.23469 10.72602 Molecular weight = 355.15amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004583 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.240018 B = 6108.634378 C = 7674.305751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.575 5.575 3 C 0.095 3.905 4 C 0.631 3.369 5 N -0.635 5.635 6 C 0.634 3.366 7 N -0.576 5.576 8 C 0.095 3.905 9 C 0.097 3.903 10 N -0.603 5.603 11 C 0.420 3.580 12 C 0.228 3.772 13 C 0.036 3.964 14 C -0.560 4.560 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.880 5.880 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.270 1.270 22 N 0.012 4.988 23 O -0.137 6.137 24 O -0.119 6.119 25 N -0.011 5.011 26 O -0.054 6.054 27 O -0.167 6.167 28 N -0.582 5.582 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.558 -5.286 -0.139 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.291 5.291 3 C -0.048 4.048 4 C 0.267 3.733 5 N -0.375 5.375 6 C 0.270 3.730 7 N -0.293 5.293 8 C -0.048 4.048 9 C -0.046 4.046 10 N -0.338 5.338 11 C 0.136 3.864 12 C 0.068 3.932 13 C -0.002 4.002 14 C -0.598 4.598 15 H 0.104 0.896 16 C -0.128 4.128 17 N -0.517 5.517 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.195 1.195 22 N 0.536 4.464 23 O -0.357 6.357 24 O -0.342 6.342 25 N 0.515 4.485 26 O -0.291 6.291 27 O -0.373 6.373 28 N -0.316 5.316 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.520 -4.380 -0.205 19.032 hybrid contribution 0.963 -0.150 -0.008 0.975 sum -17.556 -4.531 -0.213 18.133 Atomic orbital electron populations 1.21650 0.77000 1.02457 1.02466 1.45945 1.06125 1.01922 1.75144 1.21875 0.98139 0.81955 1.02793 1.18783 0.84106 0.85938 0.84435 1.67902 1.40215 0.97044 1.32289 1.18728 0.84055 0.86061 0.84113 1.45872 1.06174 1.01764 1.75469 1.21770 0.77069 1.04667 1.01257 1.21759 0.97960 0.82605 1.02245 1.68175 1.08646 1.29911 1.27042 1.20692 0.92237 0.84308 0.89149 1.24919 0.88916 1.00937 0.78451 1.20146 0.98919 0.77361 1.03760 1.21301 0.88250 0.95199 1.55033 0.89586 1.24893 1.00029 0.94670 0.93187 1.69936 1.36692 0.97709 1.47334 0.86321 0.83244 0.77161 0.79666 1.19158 1.21027 1.19496 1.43729 0.99683 1.00285 1.02719 1.94585 1.33433 1.14394 1.93321 1.94550 1.60780 1.68412 1.10434 1.43634 1.01729 1.00358 1.02777 1.94613 0.97988 1.58472 1.78041 1.94532 1.53468 1.43919 1.45361 1.68120 1.07710 1.29519 1.26281 0.90177 0.91944 0.91952 0.92044 0.89081 0.90796 0.88825 0.92016 0.92099 0.92546 0.90737 0.89454 0.90835 0.89389 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.96 10.17 59.85 0.61 1.57 16 2 N -0.57 -7.66 3.36 -191.74 -0.64 -8.30 16 3 C 0.09 1.15 10.42 59.85 0.62 1.77 16 4 C 0.63 10.83 8.19 -322.14 -2.64 8.19 16 5 N -0.63 -10.25 8.20 -14.75 -0.12 -10.37 16 6 C 0.63 10.77 8.19 -322.13 -2.64 8.13 16 7 N -0.58 -7.49 3.36 -191.75 -0.64 -8.13 16 8 C 0.10 0.84 10.71 59.85 0.64 1.49 16 9 C 0.10 1.08 10.50 59.85 0.63 1.71 16 10 N -0.60 -11.97 8.28 -11.51 -0.10 -12.06 16 11 C 0.42 9.02 5.77 -156.58 -0.90 8.12 16 12 C 0.23 5.34 1.06 -192.68 -0.20 5.13 16 13 C 0.04 0.92 3.40 -27.88 -0.09 0.82 16 14 C -0.56 -15.23 7.57 -34.44 -0.26 -15.49 16 15 H 0.09 2.38 5.94 -52.48 -0.31 2.07 16 16 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 17 N -0.88 -24.29 13.29 55.43 0.74 -23.55 16 18 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 22 N 0.01 0.27 3.33 -2.97 -0.01 0.27 16 23 O -0.14 -3.21 17.90 -34.69 -0.62 -3.84 16 24 O -0.12 -2.79 18.57 -29.46 -0.55 -3.34 16 25 N -0.01 -0.26 3.46 -2.97 -0.01 -0.27 16 26 O -0.05 -1.32 15.33 -34.70 -0.53 -1.86 16 27 O -0.17 -3.79 17.39 -29.46 -0.51 -4.30 16 28 N -0.58 -11.75 7.93 -11.52 -0.09 -11.84 16 29 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 35 H 0.09 0.90 6.80 -51.93 -0.35 0.54 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 40 H 0.09 1.20 7.36 -51.93 -0.38 0.82 16 41 H 0.07 1.95 8.06 -51.93 -0.42 1.53 16 42 H 0.09 2.34 7.95 -51.93 -0.41 1.93 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -32.18 377.14 -11.93 -44.12 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.17 Total: -1.84 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: -4.34 Total: 23.45 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -0.88 Total: -74.26 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -2.21 Total: -13.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.18 -11.93 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019319966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.263 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds