Wall clock time and date at job start Tue Mar 31 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46890 * 2 1 4 4 C 1.52995 * 109.47461 * 119.99987 * 2 1 3 5 5 N 1.46508 * 109.47075 * 180.02562 * 4 2 1 6 6 C 1.39065 * 119.99648 * 179.97438 * 5 4 2 7 7 N 1.32392 * 119.71418 * 0.02562 * 6 5 4 8 8 C 1.31967 * 121.63419 * 179.97438 * 7 6 5 9 9 C 1.38045 * 120.87715 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.33219 * 180.02562 * 9 8 7 11 11 F 1.39900 * 109.46715 * 0.02562 * 10 9 8 12 12 F 1.39897 * 109.47068 * 119.99918 * 10 9 8 13 13 F 1.39895 * 109.47042 * 240.00228 * 10 9 8 14 14 C 1.38847 * 119.34051 * 0.27691 * 9 8 7 15 15 C 1.38421 * 118.48916 * 359.43436 * 14 9 8 16 16 Cl 1.73608 * 120.45903 * 180.26052 * 15 14 9 17 17 S 1.81000 * 109.47147 * 240.00488 * 2 1 3 18 18 C 1.76203 * 100.00107 * 59.99609 * 17 2 1 19 19 H 1.08006 * 119.99951 * 359.97438 * 18 17 2 20 20 C 1.38797 * 119.99946 * 180.02562 * 18 17 2 21 21 N 1.31625 * 120.00108 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99809 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47056 * 60.00076 * 22 20 18 24 24 H 1.48502 * 109.46822 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47190 * 299.99935 * 22 20 18 26 26 H 1.08998 * 109.47142 * 299.99526 * 1 2 3 27 27 H 1.08999 * 109.47678 * 59.99678 * 1 2 3 28 28 H 1.09001 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46963 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47223 * 300.00600 * 3 2 1 31 31 H 1.08998 * 109.46841 * 60.00289 * 3 2 1 32 32 H 1.08996 * 109.46955 * 60.00316 * 4 2 1 33 33 H 1.08998 * 109.47340 * 300.00366 * 4 2 1 34 34 H 0.96996 * 119.99490 * 0.02562 * 5 4 2 35 35 H 1.07998 * 119.56017 * 179.97438 * 8 7 6 36 36 H 1.07997 * 120.75169 * 179.72454 * 14 9 8 37 37 H 0.97001 * 120.00097 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5051 -0.7206 1.2494 6 6 4.2005 -1.3222 2.2927 7 7 3.5328 -1.8942 3.2826 8 6 4.1540 -2.4763 4.2909 9 6 5.5328 -2.5100 4.3493 10 6 6.2295 -3.1786 5.5064 11 9 5.2754 -3.6910 6.3920 12 9 7.0299 -4.2219 5.0289 13 9 7.0297 -2.2439 6.1720 14 6 6.2714 -1.9171 3.3340 15 6 5.5925 -1.3195 2.2861 16 17 6.4649 -0.5691 0.9863 17 16 2.1333 -0.8531 -1.4779 18 6 1.4172 0.1595 -2.7295 19 1 0.8138 1.0121 -2.4548 20 6 1.6277 -0.1391 -4.0686 21 7 2.3627 -1.1784 -4.4034 22 14 0.8680 0.9340 -5.3954 23 1 1.3696 2.3247 -5.2548 24 1 1.2412 0.4066 -6.7325 25 1 -0.6102 0.9243 -5.2538 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6768 -1.7489 1.2491 33 1 1.6767 -0.2075 2.1392 34 1 3.9900 -0.3000 0.5222 35 1 3.5759 -2.9324 5.0810 36 1 7.3510 -1.9261 3.3589 37 1 2.5102 -1.3869 -5.3392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020385517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:18 Heat of formation + Delta-G solvation = -131.159488 kcal Electronic energy + Delta-G solvation = -26332.664243 eV Core-core repulsion = 21846.749780 eV Total energy + Delta-G solvation = -4485.914463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 354.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.30552 -47.84176 -47.75351 -40.60073 -37.19232 -36.68929 -34.24081 -32.64177 -32.50238 -30.63380 -26.91149 -26.77035 -25.53849 -25.12956 -23.52737 -22.25461 -20.16980 -18.74629 -18.65473 -18.63268 -18.12303 -17.49378 -16.75178 -15.51095 -15.45198 -15.02797 -14.87906 -14.73876 -14.54155 -14.44399 -14.21628 -14.09833 -13.98613 -13.93045 -13.46465 -13.33709 -13.19439 -12.78934 -12.37431 -12.32234 -12.13024 -11.90496 -11.63896 -11.27926 -11.11162 -11.01957 -10.95904 -10.76880 -10.53374 -10.37550 -9.83598 -9.77791 -9.51799 -9.14054 -8.33054 -7.89390 -6.67930 -6.31413 -4.03395 0.72139 0.85487 1.92589 2.52118 3.00506 3.14911 3.16845 3.22027 3.33932 3.36172 3.60646 3.87896 4.09520 4.21855 4.28121 4.48213 4.63382 4.97439 5.05231 5.05672 5.27344 5.39945 5.43616 5.52810 5.65989 5.82963 5.90863 6.03226 6.12683 6.23772 6.31726 6.38431 6.69762 6.76524 6.97911 7.16793 7.54289 7.91142 8.27955 9.15617 10.76374 Molecular weight = 354.05amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002567 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.630135 B =10905.763441 C =11483.159598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.154 3.846 5 N -0.682 5.682 6 C 0.448 3.552 7 N -0.526 5.526 8 C 0.215 3.785 9 C -0.314 4.314 10 C 0.526 3.474 11 F -0.178 7.178 12 F -0.178 7.178 13 F -0.179 7.179 14 C 0.028 3.972 15 C -0.166 4.166 16 Cl -0.042 7.042 17 S -0.106 6.106 18 C -0.514 4.514 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.869 5.869 22 Si 0.915 3.085 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.423 0.577 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.206 -0.866 18.039 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.195 4.195 3 C -0.190 4.190 4 C 0.030 3.970 5 N -0.311 5.311 6 C 0.207 3.793 7 N -0.245 5.245 8 C 0.053 3.947 9 C -0.322 4.322 10 C 0.471 3.529 11 F -0.159 7.159 12 F -0.160 7.160 13 F -0.161 7.161 14 C 0.002 3.998 15 C -0.200 4.200 16 Cl -0.013 7.013 17 S 0.123 5.877 18 C -0.662 4.662 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.741 3.259 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.266 0.734 35 H 0.190 0.810 36 H 0.167 0.833 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.879 -1.781 17.538 18.583 hybrid contribution 0.136 1.760 -1.044 2.051 sum 6.015 -0.021 16.494 17.557 Atomic orbital electron populations 1.21925 0.92828 1.02362 1.01442 1.22935 0.99055 0.98618 0.98900 1.22035 1.00622 0.94849 1.01526 1.21301 0.77788 1.01186 0.96732 1.45362 1.07622 1.56462 1.21659 1.18363 0.86379 0.87055 0.87512 1.67647 1.37984 1.15866 1.02955 1.22424 0.89899 0.88877 0.93496 1.20446 0.96231 1.15387 1.00116 1.17891 0.76613 0.76451 0.81953 1.93155 1.64125 1.87767 1.70883 1.93219 1.74971 1.59659 1.88120 1.93211 1.75020 1.65464 1.82387 1.20834 1.00700 0.89241 0.89029 1.21047 0.91301 1.11363 0.96315 1.98399 1.75384 1.80496 1.47040 1.84779 1.67907 1.40230 0.94782 1.22674 1.36879 1.15043 0.91631 0.90467 1.24995 0.95075 0.95528 0.98037 1.69994 1.36424 1.25778 1.18244 0.86278 0.79537 0.80144 0.79924 1.19969 1.20891 1.19925 0.93938 0.91190 0.92087 0.92899 0.91250 0.93911 0.90621 0.91173 0.73416 0.81037 0.83257 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.29 37.16 0.31 -1.81 16 2 C -0.08 -1.50 0.61 -90.62 -0.06 -1.56 16 3 C -0.13 -2.21 8.11 37.16 0.30 -1.90 16 4 C 0.15 2.40 4.58 -4.04 -0.02 2.38 16 5 N -0.68 -10.51 5.08 -60.39 -0.31 -10.81 16 6 C 0.45 6.39 7.48 -154.94 -1.16 5.23 16 7 N -0.53 -7.05 9.57 -12.40 -0.12 -7.17 16 8 C 0.21 2.34 10.59 -17.56 -0.19 2.16 16 9 C -0.31 -3.32 5.38 -104.46 -0.56 -3.89 16 10 C 0.53 5.18 3.33 36.01 0.12 5.30 16 11 F -0.18 -1.68 15.99 2.25 0.04 -1.65 16 12 F -0.18 -1.87 17.25 2.25 0.04 -1.83 16 13 F -0.18 -1.82 17.24 2.25 0.04 -1.78 16 14 C 0.03 0.31 9.56 -39.29 -0.38 -0.07 16 15 C -0.17 -2.14 6.36 -39.16 -0.25 -2.39 16 16 Cl -0.04 -0.55 27.62 -51.86 -1.43 -1.98 16 17 S -0.11 -2.49 19.64 -107.50 -2.11 -4.60 16 18 C -0.51 -13.31 8.13 30.94 0.25 -13.06 16 19 H 0.08 1.93 5.70 -52.48 -0.30 1.63 16 20 C 0.07 1.94 5.49 -17.43 -0.10 1.85 16 21 N -0.87 -24.68 13.22 55.49 0.73 -23.95 16 22 Si 0.91 20.54 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.29 6.53 -51.93 -0.34 0.96 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.88 6.86 -51.93 -0.36 0.52 16 30 H 0.07 1.29 6.53 -51.93 -0.34 0.95 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.42 6.91 5.47 -40.82 -0.22 6.69 16 35 H 0.17 1.41 7.15 -52.49 -0.38 1.04 16 36 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -27.89 349.72 -8.20 -36.09 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.60 Total: 4.66 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.72 Total: -7.77 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.31 Total: -41.93 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.11 Total: -4.60 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.43 Total: -1.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.89 -8.20 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020385517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.071 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds